Wall clock time and date at job start Tue Mar 31 2020 21:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47171 * 2 1 4 4 O 1.42897 * 109.47246 * 119.99653 * 2 1 3 5 5 C 1.42902 * 114.00520 * 270.00385 * 4 2 1 6 6 C 1.52999 * 109.47348 * 179.97438 * 5 4 2 7 7 H 1.08995 * 110.32985 * 305.70122 * 6 5 4 8 8 C 1.54472 * 110.36971 * 183.45079 * 6 5 4 9 9 C 1.54512 * 104.06335 * 217.19166 * 8 6 5 10 10 C 1.54481 * 104.06147 * 359.97438 * 9 8 6 11 11 O 1.44425 * 110.37091 * 67.95078 * 6 5 4 12 12 C 1.50699 * 109.47319 * 240.00148 * 2 1 3 13 13 O 1.21285 * 119.99771 * 257.32155 * 12 2 1 14 14 N 1.34773 * 120.00291 * 77.31703 * 12 2 1 15 15 C 1.46662 * 125.33457 * 175.29251 * 14 12 2 16 16 C 1.53672 * 107.96922 * 179.29297 * 15 14 12 17 17 H 1.09000 * 113.31458 * 106.33557 * 16 15 14 18 18 C 1.53986 * 109.90628 * 232.81848 * 16 15 14 19 19 N 1.46757 * 106.67268 * 82.58114 * 18 16 15 20 20 C 1.36937 * 125.33016 * 198.42855 * 19 18 16 21 21 H 1.08004 * 119.99758 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00491 * 0.02643 * 20 19 18 23 23 N 1.31629 * 119.99547 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00490 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47404 * 89.99519 * 24 22 20 26 26 H 1.48501 * 109.47429 * 210.00118 * 24 22 20 27 27 H 1.48504 * 109.46928 * 329.99926 * 24 22 20 28 28 C 1.46657 * 109.33335 * 18.45253 * 19 18 16 29 29 C 1.53673 * 107.97078 * 359.28670 * 28 19 18 30 30 H 1.09005 * 112.77046 * 106.01900 * 29 28 19 31 31 C 1.47714 * 125.01521 * 354.54370 * 14 12 2 32 32 H 1.09007 * 109.46923 * 65.05297 * 1 2 3 33 33 H 1.09001 * 109.47219 * 185.05370 * 1 2 3 34 34 H 1.08996 * 109.47628 * 305.05684 * 1 2 3 35 35 H 1.09001 * 109.46476 * 299.99877 * 5 4 2 36 36 H 1.09000 * 109.46872 * 59.99266 * 5 4 2 37 37 H 1.09004 * 110.51758 * 335.83069 * 8 6 5 38 38 H 1.08993 * 110.51664 * 98.40772 * 8 6 5 39 39 H 1.08998 * 110.51360 * 118.64585 * 9 8 6 40 40 H 1.09008 * 110.51165 * 241.35678 * 9 8 6 41 41 H 1.09000 * 110.37193 * 142.81106 * 10 9 8 42 42 H 1.08994 * 110.37350 * 265.04011 * 10 9 8 43 43 H 1.09007 * 109.76384 * 59.66486 * 15 14 12 44 44 H 1.08996 * 109.78251 * 298.93391 * 15 14 12 45 45 H 1.08996 * 110.01243 * 323.27854 * 18 16 15 46 46 H 1.08994 * 110.01482 * 201.88802 * 18 16 15 47 47 H 0.96994 * 119.99474 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.76294 * 239.65905 * 28 19 18 49 49 H 1.08994 * 109.76839 * 118.92140 * 28 19 18 50 50 H 1.09002 * 109.75964 * 79.10669 * 31 14 12 51 51 H 1.09001 * 110.75215 * 317.41071 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2000 0.1830 2.2941 6 6 2.7078 -0.6407 3.4792 7 1 2.0352 -1.4754 3.6762 8 6 2.8423 0.2495 4.7345 9 6 4.1133 -0.2798 5.4357 10 6 4.5960 -1.4277 4.5214 11 8 4.0446 -1.1225 3.2206 12 6 2.0323 -0.7104 -1.2305 13 8 2.4518 -1.8453 -1.1466 14 7 2.0154 -0.0846 -2.4240 15 6 2.5627 -0.6249 -3.6728 16 6 2.3145 0.4065 -4.7846 17 1 3.2162 0.9373 -5.0898 18 6 1.6027 -0.2652 -5.9735 19 7 0.1726 -0.2961 -5.6451 20 6 -0.7592 -1.1042 -6.2400 21 1 -1.7927 -1.0555 -5.9304 22 6 -0.3754 -1.9860 -7.2411 23 7 0.8841 -2.0449 -7.6188 24 14 -1.6466 -3.0877 -8.0532 25 1 -2.2248 -2.3920 -9.2308 26 1 -0.9994 -4.3500 -8.4925 27 1 -2.7263 -3.3972 -7.0817 28 6 -0.1022 0.6743 -4.5804 29 6 1.2254 1.3473 -4.1980 30 1 1.3019 2.3699 -4.5677 31 6 1.4266 1.2467 -2.6748 32 1 -0.3633 0.4335 -0.9318 33 1 -0.3634 -1.0237 0.0905 34 1 -0.3634 0.5902 0.8412 35 1 2.9319 0.9514 2.0450 36 1 1.2537 0.6547 2.5588 37 1 2.9700 1.2940 4.4502 38 1 1.9715 0.1340 5.3797 39 1 4.8692 0.5030 5.4980 40 1 3.8719 -0.6589 6.4288 41 1 5.6850 -1.4453 4.4774 42 1 4.2160 -2.3841 4.8804 43 1 2.0622 -1.5612 -3.9200 44 1 3.6333 -0.7974 -3.5622 45 1 1.9769 -1.2801 -6.1072 46 1 1.7646 0.3154 -6.8816 47 1 1.1523 -2.6613 -8.3181 48 1 -0.5190 0.1620 -3.7133 49 1 -0.8063 1.4252 -4.9388 50 1 2.1133 2.0229 -2.3370 51 1 0.4687 1.3477 -2.1644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501244814.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:28 Heat of formation + Delta-G solvation = -114.223743 kcal Electronic energy + Delta-G solvation = -30501.869118 eV Core-core repulsion = 26401.265225 eV Total energy + Delta-G solvation = -4100.603893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64510 -40.51537 -39.85254 -38.35389 -36.58630 -34.19900 -33.27910 -32.93750 -31.65969 -31.29449 -30.83259 -27.58902 -27.03814 -26.53459 -25.33693 -23.78149 -22.91374 -21.98564 -21.75655 -20.85563 -20.54650 -18.96086 -18.45649 -17.77010 -17.42560 -17.19122 -17.02136 -16.76194 -16.55800 -16.14710 -16.00097 -15.54941 -15.31967 -14.69141 -14.61021 -14.57708 -14.31114 -14.10965 -13.70734 -13.64263 -13.45950 -13.35908 -13.19602 -12.95605 -12.93652 -12.79599 -12.73407 -12.65240 -12.42601 -12.14171 -12.09589 -12.03951 -11.87024 -11.67789 -11.50372 -11.47451 -11.38186 -11.04014 -10.75246 -10.73481 -10.51482 -9.66493 -8.86464 -7.81879 -5.21540 1.42850 1.45257 1.50934 1.53319 1.68743 2.47621 2.73569 2.96653 3.29436 3.36156 3.45738 3.66455 3.70150 3.82168 3.83415 3.89182 3.95151 3.99885 4.04871 4.18201 4.23115 4.26177 4.31014 4.37248 4.46398 4.49816 4.57316 4.58022 4.69554 4.75254 4.81671 4.82868 4.86599 4.88946 4.93665 4.95437 5.04351 5.09283 5.12096 5.17997 5.23168 5.25119 5.37088 5.47287 5.59519 5.82041 5.90013 6.11183 6.28274 6.50119 7.10096 7.11772 7.80862 8.40885 9.22662 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002289 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.384167 B =12230.567233 C =12426.172007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 H 0.121 0.879 4 O -0.389 6.389 5 C 0.059 3.941 6 C 0.066 3.934 7 H 0.066 0.934 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.029 3.971 11 O -0.402 6.402 12 C 0.514 3.486 13 O -0.586 6.586 14 N -0.608 5.608 15 C 0.131 3.869 16 C -0.107 4.107 17 H 0.122 0.878 18 C 0.175 3.825 19 N -0.623 5.623 20 C -0.237 4.237 21 H 0.079 0.921 22 C -0.069 4.069 23 N -0.949 5.949 24 Si 0.976 3.024 25 H -0.282 1.282 26 H -0.297 1.297 27 H -0.272 1.272 28 C 0.136 3.864 29 C -0.094 4.094 30 H 0.137 0.863 31 C 0.104 3.896 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.060 0.940 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.052 0.948 46 H -0.003 1.003 47 H 0.246 0.754 48 H 0.016 0.984 49 H 0.033 0.967 50 H 0.112 0.888 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.435 14.751 26.443 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.139 0.861 4 O -0.308 6.308 5 C -0.017 4.017 6 C 0.008 3.992 7 H 0.084 0.916 8 C -0.177 4.177 9 C -0.186 4.186 10 C -0.047 4.047 11 O -0.322 6.322 12 C 0.303 3.697 13 O -0.465 6.465 14 N -0.342 5.342 15 C 0.008 3.992 16 C -0.127 4.127 17 H 0.140 0.860 18 C 0.049 3.951 19 N -0.349 5.349 20 C -0.366 4.366 21 H 0.097 0.903 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.805 3.195 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.197 1.197 28 C 0.011 3.989 29 C -0.113 4.113 30 H 0.155 0.845 31 C -0.016 4.016 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.080 0.920 45 H 0.070 0.930 46 H 0.015 0.985 47 H 0.055 0.945 48 H 0.034 0.966 49 H 0.051 0.949 50 H 0.130 0.870 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.769 13.752 26.234 29.859 hybrid contribution -0.554 -1.370 -1.070 1.824 sum 3.215 12.382 25.164 28.229 Atomic orbital electron populations 1.22283 0.91790 1.03293 1.05096 1.21891 0.96112 0.96459 0.82938 0.86109 1.88087 1.86841 1.35826 1.20004 1.22975 1.01349 0.92510 0.84820 1.23203 0.84862 0.96610 0.94494 0.91606 1.22918 0.99601 1.00381 0.94773 1.22939 0.97666 0.98231 0.99785 1.23651 1.00008 0.98309 0.82736 1.89277 1.28390 1.85691 1.28872 1.21014 0.78071 0.85958 0.84643 1.90687 1.49077 1.20482 1.86268 1.48552 1.58018 1.20450 1.07201 1.21523 0.97442 0.96702 0.83560 1.23016 0.99574 0.95602 0.94537 0.86023 1.21185 0.83243 0.98804 0.91852 1.44503 1.04961 1.43582 1.41888 1.19402 0.90131 1.13444 1.13665 0.90281 1.25621 0.98425 1.01700 1.00381 1.70122 1.15956 1.40716 1.33028 0.85106 0.78088 0.77855 0.78480 1.20863 1.22351 1.19736 1.21408 0.96175 0.90976 0.90323 1.22907 0.93329 1.00574 0.94521 0.84508 1.22640 1.00334 0.83246 0.95419 0.89884 0.93549 0.87449 0.91586 0.88241 0.89057 0.88094 0.89722 0.88593 0.88658 0.92195 0.95777 0.92050 0.92981 0.98528 0.94474 0.96572 0.94862 0.87048 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.31 9.39 71.98 0.68 -2.63 16 2 C 0.09 2.12 2.50 29.85 0.07 2.20 16 3 H 0.12 1.93 7.49 -2.38 -0.02 1.92 16 4 O -0.39 -11.13 9.58 -128.16 -1.23 -12.35 16 5 C 0.06 1.06 5.35 71.98 0.39 1.45 16 6 C 0.07 1.23 3.57 31.09 0.11 1.34 16 7 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 8 C -0.14 -1.37 6.63 31.61 0.21 -1.16 16 9 C -0.15 -1.46 7.09 31.61 0.22 -1.23 16 10 C 0.03 0.48 7.63 72.49 0.55 1.04 16 11 O -0.40 -10.31 11.35 -148.60 -1.69 -11.99 16 12 C 0.51 18.45 7.11 87.66 0.62 19.08 16 13 O -0.59 -28.19 16.90 15.40 0.26 -27.93 16 14 N -0.61 -19.75 3.33 -815.08 -2.72 -22.47 16 15 C 0.13 5.08 6.29 86.57 0.54 5.62 16 16 C -0.11 -3.75 4.05 -9.41 -0.04 -3.79 16 17 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 18 C 0.17 8.51 4.87 86.66 0.42 8.94 16 19 N -0.62 -31.86 3.38 -697.74 -2.36 -34.21 16 20 C -0.24 -13.53 10.25 84.03 0.86 -12.67 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.07 -4.01 5.48 84.86 0.47 -3.54 16 23 N -0.95 -58.13 10.16 21.65 0.22 -57.91 16 24 Si 0.98 47.25 29.55 68.60 2.03 49.28 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 27 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 28 C 0.14 5.20 6.64 86.58 0.57 5.77 16 29 C -0.09 -2.62 4.03 -9.41 -0.04 -2.66 16 30 H 0.14 2.84 8.14 -2.38 -0.02 2.82 16 31 C 0.10 2.28 5.55 86.48 0.48 2.76 16 32 H 0.08 1.54 5.79 -2.38 -0.01 1.52 16 33 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.27 7.99 -2.39 -0.02 1.25 16 35 H 0.07 1.06 8.08 -2.39 -0.02 1.04 16 36 H 0.10 1.03 7.99 -2.39 -0.02 1.01 16 37 H 0.09 0.68 7.87 -2.39 -0.02 0.66 16 38 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.02 1.19 7.52 -2.38 -0.02 1.17 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 3.00 5.86 -2.39 -0.01 2.99 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.02 0.64 7.47 -2.39 -0.02 0.62 16 49 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.10 1.78 5.28 -2.39 -0.01 1.77 16 Total: -1.00 -87.05 395.37 1.55 -85.50 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.90 Total: 11.59 kcal Atomic # 6 Polarization: 14.37 SS G_CDS: 6.13 Total: 20.50 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -4.86 Total: -114.59 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -2.65 Total: -52.28 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -87.05 1.55 -85.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501244814.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.720 kcal (2) G-P(sol) polarization free energy of solvation -87.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds