Wall clock time and date at job start Tue Mar 31 2020 21:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46896 * 93.42139 * 3 2 1 5 5 C 1.42905 * 113.99746 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47135 * 329.99880 * 5 4 3 7 7 C 1.52997 * 109.47164 * 90.00108 * 5 4 3 8 8 C 1.50702 * 109.47222 * 210.00329 * 5 4 3 9 9 O 1.21283 * 119.99645 * 351.08001 * 8 5 4 10 10 N 1.34770 * 120.00041 * 171.08095 * 8 5 4 11 11 C 1.46931 * 120.63249 * 4.59424 * 10 8 5 12 12 C 1.52758 * 109.00781 * 233.58601 * 11 10 8 13 13 C 1.53043 * 109.38467 * 305.58610 * 12 11 10 14 14 N 1.46499 * 109.44559 * 181.25469 * 13 12 11 15 15 C 1.36940 * 120.00194 * 297.55229 * 14 13 12 16 16 H 1.08000 * 120.00449 * 323.69987 * 15 14 13 17 17 C 1.38813 * 119.99658 * 143.69475 * 15 14 13 18 18 N 1.31616 * 119.99906 * 156.81004 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 336.81793 * 17 15 14 20 20 H 1.48493 * 109.47565 * 95.33537 * 19 17 15 21 21 H 1.48503 * 109.46974 * 215.33637 * 19 17 15 22 22 H 1.48505 * 109.46879 * 335.33192 * 19 17 15 23 23 C 1.46504 * 119.99674 * 117.56352 * 14 13 12 24 24 C 1.52992 * 109.47641 * 89.99564 * 23 14 13 25 25 O 1.42902 * 109.46959 * 64.99753 * 24 23 14 26 26 C 1.42910 * 113.99961 * 180.02562 * 25 24 23 27 27 C 1.53042 * 109.53327 * 61.24256 * 13 12 11 28 28 C 1.46932 * 120.62823 * 184.87729 * 10 8 5 29 29 H 4.38439 * 5.44550 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47293 * 333.42066 * 3 2 1 31 31 H 1.08992 * 109.46971 * 213.42235 * 3 2 1 32 32 H 1.09003 * 109.46988 * 55.84897 * 7 5 4 33 33 H 1.08996 * 109.47174 * 175.84821 * 7 5 4 34 34 H 1.09000 * 109.47328 * 295.84667 * 7 5 4 35 35 H 1.08997 * 109.58492 * 353.41969 * 11 10 8 36 36 H 1.09000 * 109.58436 * 113.84337 * 11 10 8 37 37 H 1.08996 * 109.56255 * 185.55294 * 12 11 10 38 38 H 1.08998 * 109.35777 * 65.49915 * 12 11 10 39 39 H 1.08998 * 109.46166 * 301.22568 * 13 12 11 40 40 H 0.96999 * 119.99989 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46596 * 209.99805 * 23 14 13 42 42 H 1.09003 * 109.46836 * 329.99168 * 23 14 13 43 43 H 1.08997 * 109.47598 * 184.99615 * 24 23 14 44 44 H 1.09002 * 109.47256 * 305.00155 * 24 23 14 45 45 H 1.09009 * 109.46714 * 60.00161 * 26 25 24 46 46 H 1.08995 * 109.46847 * 180.02562 * 26 25 24 47 47 H 1.08992 * 109.47179 * 300.00461 * 26 25 24 48 48 H 1.09003 * 109.49443 * 178.68462 * 27 13 12 49 49 H 1.09004 * 109.50009 * 58.59175 * 27 13 12 50 50 H 1.08994 * 109.58584 * 246.15201 * 28 10 8 51 51 H 1.08994 * 109.58813 * 6.43676 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.0813 -1.3449 5 6 4.5468 0.0892 -1.4575 6 1 4.9789 0.5515 -0.5699 7 6 5.0565 -1.3478 -1.5836 8 6 4.9498 0.8742 -2.6792 9 8 4.1066 1.2390 -3.4709 10 7 6.2471 1.1707 -2.8920 11 6 7.2903 0.6512 -1.9971 12 6 8.1367 1.8174 -1.4899 13 6 8.6707 2.6140 -2.6826 14 7 9.5071 3.7150 -2.1985 15 6 8.9608 4.6971 -1.4160 16 1 7.9517 5.0352 -1.5997 17 6 9.7041 5.2579 -0.3864 18 7 9.4059 6.4589 0.0618 19 14 11.1275 4.3081 0.3626 20 1 12.3957 4.7194 -0.2912 21 1 11.2043 4.5969 1.8173 22 1 10.9140 2.8529 0.1575 23 6 10.9280 3.7656 -2.5519 24 6 11.1018 4.5461 -3.8562 25 8 10.7143 5.9064 -3.6524 26 6 10.8387 6.7267 -4.8160 27 6 7.4978 3.1799 -3.4864 28 6 6.6446 2.0247 -4.0196 29 1 -1.0500 -0.0002 0.0000 30 1 3.0097 -0.9182 0.4598 31 1 3.0089 0.8585 0.5660 32 1 4.5682 -1.8337 -2.4284 33 1 6.1346 -1.3383 -1.7433 34 1 4.8296 -1.8954 -0.6688 35 1 6.8267 0.1432 -1.1516 36 1 7.9250 -0.0472 -2.5425 37 1 8.9726 1.4342 -0.9047 38 1 7.5217 2.4655 -0.8656 39 1 9.2652 1.9592 -3.3197 40 1 9.9251 6.8507 0.7815 41 1 11.4831 4.2609 -1.7552 42 1 11.3063 2.7516 -2.6820 43 1 12.1462 4.5084 -4.1658 44 1 10.4768 4.1025 -4.6312 45 1 10.2078 6.3281 -5.6106 46 1 10.5259 7.7435 -4.5788 47 1 11.8774 6.7341 -5.1460 48 1 7.8790 3.7665 -4.3223 49 1 6.8888 3.8153 -2.8432 50 1 7.2256 1.4406 -4.7333 51 1 5.7551 2.4204 -4.5096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569454751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:01 Heat of formation + Delta-G solvation = -25.231429 kcal Electronic energy + Delta-G solvation = -30927.280292 eV Core-core repulsion = 26830.535395 eV Total energy + Delta-G solvation = -4096.744897 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.35786 -38.41394 -37.56836 -36.83900 -35.14592 -33.71127 -32.44714 -31.61588 -30.97941 -30.27039 -28.36524 -27.31916 -25.70862 -25.49770 -24.02536 -22.88038 -22.80622 -21.17841 -20.05370 -19.17233 -18.63921 -17.31674 -16.80982 -16.41954 -15.99595 -15.92760 -15.57171 -15.37861 -14.91758 -14.76354 -14.64087 -14.37006 -14.12702 -13.79166 -13.58477 -13.43876 -13.25527 -12.93454 -12.60852 -12.49668 -12.33813 -12.18733 -11.89528 -11.84534 -11.70164 -11.46119 -11.39506 -10.89915 -10.80551 -10.75046 -10.70969 -10.67937 -10.55173 -10.31661 -9.95366 -9.91556 -9.67507 -9.45215 -9.33226 -8.87773 -8.50921 -8.35358 -6.81687 -5.87532 -3.27041 2.19352 2.60937 2.69541 3.01317 3.34270 3.47142 3.50365 3.78540 4.27509 4.47611 4.54318 4.60479 4.68693 4.78881 4.85054 4.96049 5.02256 5.17606 5.28479 5.35261 5.38263 5.44342 5.48156 5.58176 5.67146 5.69230 5.71794 5.74604 5.81652 5.85734 5.92068 5.93672 6.01348 6.10278 6.12433 6.13042 6.15648 6.27277 6.41096 6.50696 6.70018 6.72806 6.85583 6.97508 6.99847 7.36744 7.51569 7.96318 8.14771 8.28613 8.48173 9.04108 9.82128 10.17033 11.28613 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.003023 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.532543 B = 9260.517323 C = 9920.254890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.189 4.189 3 C 0.168 3.832 4 O -0.352 6.352 5 C 0.071 3.929 6 H 0.092 0.908 7 C -0.178 4.178 8 C 0.518 3.482 9 O -0.527 6.527 10 N -0.603 5.603 11 C 0.101 3.899 12 C -0.145 4.145 13 C 0.181 3.819 14 N -0.593 5.593 15 C -0.248 4.248 16 H 0.077 0.923 17 C 0.044 3.956 18 N -0.896 5.896 19 Si 0.870 3.130 20 H -0.288 1.288 21 H -0.305 1.305 22 H -0.271 1.271 23 C 0.134 3.866 24 C 0.047 3.953 25 O -0.346 6.346 26 C 0.032 3.968 27 C -0.138 4.138 28 C 0.116 3.884 29 H 0.222 0.778 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.259 0.741 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.026 0.974 44 H 0.036 0.964 45 H 0.029 0.971 46 H 0.078 0.922 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 -14.916 -3.513 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.189 4.189 3 C 0.093 3.907 4 O -0.270 6.270 5 C 0.010 3.990 6 H 0.110 0.890 7 C -0.235 4.235 8 C 0.305 3.695 9 O -0.402 6.402 10 N -0.338 5.338 11 C -0.022 4.022 12 C -0.185 4.185 13 C 0.074 3.926 14 N -0.314 5.314 15 C -0.376 4.376 16 H 0.094 0.906 17 C -0.156 4.156 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.217 1.217 21 H -0.234 1.234 22 H -0.196 1.196 23 C 0.008 3.992 24 C -0.033 4.033 25 O -0.263 6.263 26 C -0.066 4.066 27 C -0.178 4.178 28 C -0.006 4.006 29 H 0.239 0.761 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.097 0.903 47 H 0.043 0.957 48 H 0.088 0.912 49 H 0.093 0.907 50 H 0.080 0.920 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.111 -14.497 -3.787 15.831 hybrid contribution 1.125 -0.371 0.469 1.274 sum -3.986 -14.868 -3.318 15.747 Atomic orbital electron populations 1.24945 0.95865 1.00907 0.97544 1.22447 0.93805 1.00569 1.02083 1.19200 0.85036 1.01661 0.84850 1.88106 1.19120 1.94858 1.24926 1.21927 0.82616 0.96634 0.97863 0.89040 1.22416 1.02501 0.94865 1.03758 1.20186 0.82297 0.80134 0.86929 1.90698 1.49888 1.53168 1.46459 1.48049 1.05441 1.50364 1.29916 1.21974 0.89885 0.97144 0.93174 1.22342 0.99480 0.96285 1.00396 1.20300 0.91083 0.88618 0.92622 1.44106 1.04449 1.24628 1.58215 1.18497 1.01006 1.10930 1.07188 0.90581 1.25301 0.97300 0.95867 0.97166 1.69890 1.41526 1.13369 1.28944 0.87062 0.83326 0.81700 0.77804 1.21689 1.23383 1.19648 1.21348 0.87270 0.96071 0.94509 1.23270 0.95830 0.84237 0.99924 1.88316 1.87120 1.19233 1.31650 1.22640 0.98292 0.96170 0.89461 1.22323 0.97937 0.96772 1.00734 1.21686 0.99661 0.91755 0.87521 0.76143 0.90626 0.90364 0.90974 0.90021 0.91186 0.90108 0.91440 0.91136 0.90302 0.93092 0.93076 0.91985 0.92898 0.95589 0.94577 0.95249 0.90349 0.95662 0.91212 0.90710 0.92043 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 19.25 29.55 0.57 -1.22 16 2 C -0.19 -2.25 13.73 -37.12 -0.51 -2.76 16 3 C 0.17 1.81 6.22 34.37 0.21 2.02 16 4 O -0.35 -4.95 9.50 -54.98 -0.52 -5.48 16 5 C 0.07 0.85 2.29 -27.88 -0.06 0.79 16 6 H 0.09 0.94 7.08 -51.93 -0.37 0.57 16 7 C -0.18 -1.59 9.08 37.16 0.34 -1.25 16 8 C 0.52 8.05 7.08 -10.99 -0.08 7.97 16 9 O -0.53 -10.38 15.96 -14.20 -0.23 -10.60 16 10 N -0.60 -8.46 2.98 -173.03 -0.52 -8.98 16 11 C 0.10 1.19 5.07 -3.93 -0.02 1.17 16 12 C -0.15 -2.26 5.33 -26.83 -0.14 -2.40 16 13 C 0.18 3.11 2.59 -67.89 -0.18 2.93 16 14 N -0.59 -12.70 2.02 -165.61 -0.33 -13.04 16 15 C -0.25 -6.46 8.27 -15.06 -0.12 -6.59 16 16 H 0.08 2.21 6.93 -52.49 -0.36 1.85 16 17 C 0.04 1.22 5.30 -17.43 -0.09 1.13 16 18 N -0.90 -27.01 13.97 55.49 0.78 -26.24 16 19 Si 0.87 21.36 25.05 -169.99 -4.26 17.10 16 20 H -0.29 -7.06 6.65 56.52 0.38 -6.69 16 21 H -0.31 -7.75 7.11 56.52 0.40 -7.34 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.13 2.71 4.90 -4.04 -0.02 2.69 16 24 C 0.05 0.87 6.28 37.15 0.23 1.10 16 25 O -0.35 -7.52 10.18 -35.23 -0.36 -7.88 16 26 C 0.03 0.53 11.01 101.05 1.11 1.64 16 27 C -0.14 -2.33 5.25 -26.61 -0.14 -2.47 16 28 C 0.12 1.69 6.42 -3.71 -0.02 1.67 16 29 H 0.22 1.35 7.80 -54.09 -0.42 0.93 16 30 H 0.08 0.60 7.97 -51.93 -0.41 0.19 16 31 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.63 5.55 -51.93 -0.29 0.34 16 34 H 0.07 0.48 7.97 -51.93 -0.41 0.07 16 35 H 0.08 0.77 4.60 -51.93 -0.24 0.53 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 1.44 7.76 -51.93 -0.40 1.04 16 39 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.06 1.43 3.16 -51.93 -0.16 1.27 16 42 H 0.05 0.90 7.94 -51.93 -0.41 0.49 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.03 0.44 8.14 -51.92 -0.42 0.02 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.07 1.50 6.97 -51.93 -0.36 1.14 16 50 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.09 1.37 7.03 -51.93 -0.37 1.01 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -35.16 404.98 -6.69 -41.85 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -8.43 Total: 0.74 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 1.08 Total: 6.42 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: -0.07 Total: -48.25 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.11 Total: -23.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.26 Total: 17.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.16 -6.69 -41.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569454751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.616 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds