Wall clock time and date at job start Tue Mar 31 2020 21:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46896 * 93.42139 * 3 2 1 5 5 C 1.42905 * 113.99746 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.47135 * 329.99880 * 5 4 3 7 7 C 1.52997 * 109.47164 * 90.00108 * 5 4 3 8 8 C 1.50702 * 109.47222 * 210.00329 * 5 4 3 9 9 O 1.21283 * 119.99645 * 351.08001 * 8 5 4 10 10 N 1.34770 * 120.00041 * 171.08095 * 8 5 4 11 11 C 1.46931 * 120.63249 * 4.59424 * 10 8 5 12 12 C 1.52758 * 109.00781 * 233.58601 * 11 10 8 13 13 C 1.53043 * 109.38467 * 305.58610 * 12 11 10 14 14 N 1.46499 * 109.44559 * 181.25469 * 13 12 11 15 15 C 1.36940 * 120.00194 * 297.55229 * 14 13 12 16 16 H 1.08000 * 120.00449 * 323.69987 * 15 14 13 17 17 C 1.38813 * 119.99658 * 143.69475 * 15 14 13 18 18 N 1.31616 * 119.99906 * 156.81004 * 17 15 14 19 19 Si 1.86802 * 120.00075 * 336.81793 * 17 15 14 20 20 H 1.48493 * 109.47565 * 95.33537 * 19 17 15 21 21 H 1.48503 * 109.46974 * 215.33637 * 19 17 15 22 22 H 1.48505 * 109.46879 * 335.33192 * 19 17 15 23 23 C 1.46504 * 119.99674 * 117.56352 * 14 13 12 24 24 C 1.52992 * 109.47641 * 89.99564 * 23 14 13 25 25 O 1.42902 * 109.46959 * 64.99753 * 24 23 14 26 26 C 1.42910 * 113.99961 * 180.02562 * 25 24 23 27 27 C 1.53042 * 109.53327 * 61.24256 * 13 12 11 28 28 C 1.46932 * 120.62823 * 184.87729 * 10 8 5 29 29 H 4.38439 * 5.44550 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47293 * 333.42066 * 3 2 1 31 31 H 1.08992 * 109.46971 * 213.42235 * 3 2 1 32 32 H 1.09003 * 109.46988 * 55.84897 * 7 5 4 33 33 H 1.08996 * 109.47174 * 175.84821 * 7 5 4 34 34 H 1.09000 * 109.47328 * 295.84667 * 7 5 4 35 35 H 1.08997 * 109.58492 * 353.41969 * 11 10 8 36 36 H 1.09000 * 109.58436 * 113.84337 * 11 10 8 37 37 H 1.08996 * 109.56255 * 185.55294 * 12 11 10 38 38 H 1.08998 * 109.35777 * 65.49915 * 12 11 10 39 39 H 1.08998 * 109.46166 * 301.22568 * 13 12 11 40 40 H 0.96999 * 119.99989 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46596 * 209.99805 * 23 14 13 42 42 H 1.09003 * 109.46836 * 329.99168 * 23 14 13 43 43 H 1.08997 * 109.47598 * 184.99615 * 24 23 14 44 44 H 1.09002 * 109.47256 * 305.00155 * 24 23 14 45 45 H 1.09009 * 109.46714 * 60.00161 * 26 25 24 46 46 H 1.08995 * 109.46847 * 180.02562 * 26 25 24 47 47 H 1.08992 * 109.47179 * 300.00461 * 26 25 24 48 48 H 1.09003 * 109.49443 * 178.68462 * 27 13 12 49 49 H 1.09004 * 109.50009 * 58.59175 * 27 13 12 50 50 H 1.08994 * 109.58584 * 246.15201 * 28 10 8 51 51 H 1.08994 * 109.58813 * 6.43676 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.0813 -1.3449 5 6 4.5468 0.0892 -1.4575 6 1 4.9789 0.5515 -0.5699 7 6 5.0565 -1.3478 -1.5836 8 6 4.9498 0.8742 -2.6792 9 8 4.1066 1.2390 -3.4709 10 7 6.2471 1.1707 -2.8920 11 6 7.2903 0.6512 -1.9971 12 6 8.1367 1.8174 -1.4899 13 6 8.6707 2.6140 -2.6826 14 7 9.5071 3.7150 -2.1985 15 6 8.9608 4.6971 -1.4160 16 1 7.9517 5.0352 -1.5997 17 6 9.7041 5.2579 -0.3864 18 7 9.4059 6.4589 0.0618 19 14 11.1275 4.3081 0.3626 20 1 12.3957 4.7194 -0.2912 21 1 11.2043 4.5969 1.8173 22 1 10.9140 2.8529 0.1575 23 6 10.9280 3.7656 -2.5519 24 6 11.1018 4.5461 -3.8562 25 8 10.7143 5.9064 -3.6524 26 6 10.8387 6.7267 -4.8160 27 6 7.4978 3.1799 -3.4864 28 6 6.6446 2.0247 -4.0196 29 1 -1.0500 -0.0002 0.0000 30 1 3.0097 -0.9182 0.4598 31 1 3.0089 0.8585 0.5660 32 1 4.5682 -1.8337 -2.4284 33 1 6.1346 -1.3383 -1.7433 34 1 4.8296 -1.8954 -0.6688 35 1 6.8267 0.1432 -1.1516 36 1 7.9250 -0.0472 -2.5425 37 1 8.9726 1.4342 -0.9047 38 1 7.5217 2.4655 -0.8656 39 1 9.2652 1.9592 -3.3197 40 1 9.9251 6.8507 0.7815 41 1 11.4831 4.2609 -1.7552 42 1 11.3063 2.7516 -2.6820 43 1 12.1462 4.5084 -4.1658 44 1 10.4768 4.1025 -4.6312 45 1 10.2078 6.3281 -5.6106 46 1 10.5259 7.7435 -4.5788 47 1 11.8774 6.7341 -5.1460 48 1 7.8790 3.7665 -4.3223 49 1 6.8888 3.8153 -2.8432 50 1 7.2256 1.4406 -4.7333 51 1 5.7551 2.4204 -4.5096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569454751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:00 Heat of formation + Delta-G solvation = -49.507215 kcal Electronic energy + Delta-G solvation = -30928.332969 eV Core-core repulsion = 26830.535395 eV Total energy + Delta-G solvation = -4097.797574 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.49986 -39.60692 -38.86213 -38.21580 -36.65736 -34.58559 -33.90041 -33.16309 -32.31278 -31.34042 -29.92884 -28.11179 -27.15959 -26.86915 -25.38335 -24.16867 -24.05820 -22.62311 -21.44311 -20.32228 -19.59972 -18.44420 -18.14929 -17.83553 -17.39927 -17.07604 -16.96482 -16.57906 -16.36428 -16.04377 -15.86805 -15.66966 -15.56207 -14.94667 -14.91391 -14.57373 -14.45545 -14.33161 -14.00810 -13.77208 -13.46621 -13.36027 -13.31452 -13.09262 -12.91096 -12.86953 -12.48438 -12.39416 -12.25793 -12.12676 -12.05977 -11.81313 -11.70174 -11.61736 -11.57365 -11.27190 -11.13374 -10.83435 -10.47026 -10.44656 -10.31272 -9.64304 -8.63266 -8.00086 -5.34684 1.31328 1.39220 1.47217 1.54500 1.58035 1.79767 1.99116 2.57158 2.95563 3.11702 3.18786 3.37519 3.50614 3.63298 3.84812 3.97271 4.05621 4.11230 4.23140 4.23426 4.31692 4.37186 4.43220 4.43692 4.46816 4.57004 4.59281 4.65125 4.67631 4.72165 4.73220 4.77697 4.81553 4.84851 4.87882 4.88717 4.99488 5.08827 5.11552 5.20601 5.24854 5.45601 5.60091 5.64059 5.97869 6.10840 6.35180 6.40709 6.57674 6.62095 7.12431 7.16444 7.83477 8.20097 9.21098 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.003023 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.532543 B = 9260.517323 C = 9920.254890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.240 4.240 3 C 0.163 3.837 4 O -0.386 6.386 5 C 0.071 3.929 6 H 0.110 0.890 7 C -0.170 4.170 8 C 0.508 3.492 9 O -0.581 6.581 10 N -0.601 5.601 11 C 0.105 3.895 12 C -0.140 4.140 13 C 0.175 3.825 14 N -0.602 5.602 15 C -0.212 4.212 16 H 0.026 0.974 17 C -0.021 4.021 18 N -0.957 5.957 19 Si 0.938 3.062 20 H -0.287 1.287 21 H -0.323 1.323 22 H -0.239 1.239 23 C 0.123 3.877 24 C 0.046 3.954 25 O -0.399 6.399 26 C 0.030 3.970 27 C -0.126 4.126 28 C 0.124 3.876 29 H 0.254 0.746 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.039 0.961 39 H 0.091 0.909 40 H 0.253 0.747 41 H 0.033 0.967 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.026 0.974 50 H 0.097 0.903 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 -19.142 -4.144 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.240 4.240 3 C 0.088 3.912 4 O -0.305 6.305 5 C 0.010 3.990 6 H 0.127 0.873 7 C -0.227 4.227 8 C 0.297 3.703 9 O -0.460 6.460 10 N -0.335 5.335 11 C -0.016 4.016 12 C -0.180 4.180 13 C 0.069 3.931 14 N -0.324 5.324 15 C -0.343 4.343 16 H 0.044 0.956 17 C -0.216 4.216 18 N -0.603 5.603 19 Si 0.768 3.232 20 H -0.216 1.216 21 H -0.253 1.253 22 H -0.162 1.162 23 C -0.002 4.002 24 C -0.033 4.033 25 O -0.318 6.318 26 C -0.067 4.067 27 C -0.166 4.166 28 C 0.001 3.999 29 H 0.271 0.729 30 H 0.124 0.876 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.116 0.884 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.115 0.885 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.336 -18.792 -4.443 19.597 hybrid contribution 0.470 1.022 0.532 1.244 sum -2.865 -17.771 -3.911 18.420 Atomic orbital electron populations 1.25877 0.96882 0.99440 0.95806 1.23127 0.95035 1.02095 1.03718 1.19443 0.84778 1.03360 0.83640 1.88054 1.20275 1.95180 1.27037 1.22081 0.82212 0.98282 0.96405 0.87252 1.22413 1.03274 0.92361 1.04664 1.20982 0.82102 0.79747 0.87486 1.90666 1.51348 1.55475 1.48522 1.48164 1.05784 1.49654 1.29870 1.22183 0.89273 0.95928 0.94243 1.22232 0.99731 0.96871 0.99137 1.20583 0.90792 0.88005 0.93703 1.44198 1.05592 1.24947 1.57619 1.18179 0.98722 1.10687 1.06670 0.95636 1.25905 1.00876 0.96498 0.98304 1.70063 1.44132 1.15685 1.30403 0.85954 0.79952 0.81822 0.75422 1.21572 1.25291 1.16220 1.21549 0.85723 0.98506 0.94376 1.23308 0.97822 0.82796 0.99352 1.88237 1.87888 1.21200 1.34490 1.22758 1.00220 0.95300 0.88406 1.22146 0.97782 0.97042 0.99599 1.21556 0.98683 0.91459 0.88229 0.72947 0.87571 0.89963 0.92187 0.88096 0.88567 0.87274 0.87498 0.90166 0.94215 0.89084 0.93820 0.94865 0.88434 0.92713 0.93028 0.93805 0.91018 0.93094 0.91923 0.95533 0.88542 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 19.25 74.32 1.43 -1.72 16 2 C -0.24 -5.62 13.73 31.13 0.43 -5.19 16 3 C 0.16 3.37 6.22 70.18 0.44 3.80 16 4 O -0.39 -10.73 9.50 -130.10 -1.24 -11.96 16 5 C 0.07 1.59 2.29 29.85 0.07 1.66 16 6 H 0.11 2.00 7.08 -2.38 -0.02 1.99 16 7 C -0.17 -2.43 9.08 71.98 0.65 -1.77 16 8 C 0.51 15.51 7.08 87.66 0.62 16.13 16 9 O -0.58 -23.57 15.96 15.85 0.25 -23.32 16 10 N -0.60 -15.76 2.98 -819.74 -2.44 -18.20 16 11 C 0.11 2.03 5.07 86.22 0.44 2.47 16 12 C -0.14 -3.98 5.33 30.53 0.16 -3.82 16 13 C 0.17 5.58 2.59 45.02 0.12 5.69 16 14 N -0.60 -25.04 2.02 -677.87 -1.37 -26.41 16 15 C -0.21 -11.46 8.27 84.03 0.69 -10.77 16 16 H 0.03 1.62 6.93 -2.91 -0.02 1.60 16 17 C -0.02 -1.21 5.30 84.86 0.45 -0.77 16 18 N -0.96 -60.98 13.97 21.65 0.30 -60.68 16 19 Si 0.94 44.70 25.05 68.60 1.72 46.42 16 20 H -0.29 -13.50 6.65 99.48 0.66 -12.83 16 21 H -0.32 -16.14 7.11 99.48 0.71 -15.43 16 22 H -0.24 -9.94 7.11 99.48 0.71 -9.23 16 23 C 0.12 4.61 4.90 86.38 0.42 5.04 16 24 C 0.05 1.58 6.28 71.98 0.45 2.03 16 25 O -0.40 -17.23 10.18 -148.98 -1.52 -18.74 16 26 C 0.03 0.96 11.01 113.37 1.25 2.21 16 27 C -0.13 -4.26 5.25 30.67 0.16 -4.10 16 28 C 0.12 3.46 6.42 86.36 0.55 4.02 16 29 H 0.25 2.57 7.80 -4.42 -0.03 2.54 16 30 H 0.11 1.44 7.97 -2.39 -0.02 1.43 16 31 H 0.08 1.55 8.08 -2.39 -0.02 1.53 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.02 5.55 -2.39 -0.01 1.01 16 34 H 0.10 0.90 7.97 -2.39 -0.02 0.88 16 35 H 0.11 1.54 4.60 -2.39 -0.01 1.53 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 1.44 7.76 -2.39 -0.02 1.42 16 39 H 0.09 2.26 7.81 -2.39 -0.02 2.24 16 40 H 0.25 15.52 8.31 -92.71 -0.77 14.74 16 41 H 0.03 1.46 3.16 -2.38 -0.01 1.45 16 42 H 0.10 2.77 7.94 -2.39 -0.02 2.75 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.25 8.14 -2.38 -0.02 1.24 16 46 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 47 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.03 1.13 6.97 -2.39 -0.02 1.11 16 50 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 51 H 0.06 2.12 7.03 -2.39 -0.02 2.10 16 Total: -1.00 -85.32 404.98 4.91 -80.41 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.86 Total: 17.58 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 8.34 Total: 14.91 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -3.51 Total: -105.29 kcal Atomic # 8 Polarization: -51.53 SS G_CDS: -2.50 Total: -54.03 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.42 kcal Total: -85.32 4.91 -80.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569454751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.902 kcal (2) G-P(sol) polarization free energy of solvation -85.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds