Wall clock time and date at job start Tue Mar 31 2020 21:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47100 * 82.96895 * 3 2 1 5 5 C 1.42904 * 113.99803 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47613 * 29.99338 * 5 4 3 7 7 C 1.53004 * 109.46824 * 269.99665 * 5 4 3 8 8 C 1.50694 * 109.47102 * 150.00169 * 5 4 3 9 9 O 1.21284 * 120.00350 * 4.99081 * 8 5 4 10 10 N 1.34783 * 119.99778 * 184.99673 * 8 5 4 11 11 C 1.46923 * 120.62639 * 179.97438 * 10 8 5 12 12 C 1.53195 * 108.89431 * 233.51361 * 11 10 8 13 13 C 1.53068 * 109.29661 * 305.58570 * 12 11 10 14 14 N 1.46499 * 109.45525 * 181.24148 * 13 12 11 15 15 C 1.36938 * 119.99894 * 304.58749 * 14 13 12 16 16 H 1.08000 * 119.99614 * 321.78331 * 15 14 13 17 17 C 1.38811 * 120.00340 * 141.79215 * 15 14 13 18 18 N 1.31614 * 119.99840 * 339.27760 * 17 15 14 19 19 Si 1.86803 * 120.00046 * 159.27522 * 17 15 14 20 20 H 1.48510 * 109.46902 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47295 * 119.99672 * 19 17 15 22 22 H 1.48496 * 109.47267 * 240.00217 * 19 17 15 23 23 C 1.46501 * 120.00381 * 124.57672 * 14 13 12 24 24 C 1.52997 * 109.47138 * 90.00102 * 23 14 13 25 25 O 1.42902 * 109.46979 * 65.00295 * 24 23 14 26 26 C 1.42897 * 114.00133 * 180.02562 * 25 24 23 27 27 C 1.53044 * 109.66144 * 61.14926 * 13 12 11 28 28 C 1.46929 * 120.63153 * 359.97438 * 10 8 5 29 29 H 4.38437 * 5.44508 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47317 * 322.96344 * 3 2 1 31 31 H 1.09010 * 109.47008 * 202.96531 * 3 2 1 32 32 H 1.09000 * 109.47472 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47261 * 300.00124 * 7 5 4 34 34 H 1.09000 * 109.47158 * 60.00130 * 7 5 4 35 35 H 1.09001 * 109.59251 * 353.38048 * 11 10 8 36 36 H 1.09012 * 109.58215 * 113.66247 * 11 10 8 37 37 H 1.09000 * 109.49576 * 65.39727 * 12 11 10 38 38 H 1.08999 * 109.49455 * 185.49130 * 12 11 10 39 39 H 1.09007 * 109.34560 * 301.12660 * 13 12 11 40 40 H 0.97007 * 119.99565 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.47470 * 210.00774 * 23 14 13 42 42 H 1.09009 * 109.46903 * 330.00686 * 23 14 13 43 43 H 1.09001 * 109.47673 * 185.00030 * 24 23 14 44 44 H 1.09001 * 109.47495 * 305.00635 * 24 23 14 45 45 H 1.08997 * 109.47869 * 59.99794 * 26 25 24 46 46 H 1.09004 * 109.47429 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.47089 * 299.99429 * 26 25 24 48 48 H 1.08998 * 109.49663 * 178.75050 * 27 13 12 49 49 H 1.08997 * 109.51829 * 58.67028 * 27 13 12 50 50 H 1.09001 * 109.58020 * 246.19857 * 28 10 8 51 51 H 1.08999 * 109.58181 * 6.47848 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1224 -0.1640 -1.3372 5 6 4.5469 -0.1778 -1.4490 6 1 4.9794 -0.5827 -0.5341 7 6 5.0553 1.2490 -1.6654 8 6 4.9507 -1.0376 -2.6189 9 8 4.1023 -1.5111 -3.3449 10 7 6.2546 -1.2806 -2.8584 11 6 6.6637 -2.1173 -3.9947 12 6 7.5769 -3.2361 -3.4835 13 6 8.7399 -2.6216 -2.7006 14 7 9.6316 -3.6868 -2.2353 15 6 9.1336 -4.7166 -1.4825 16 1 8.3739 -4.5239 -0.7395 17 6 9.6052 -6.0079 -1.6743 18 7 10.1992 -6.3306 -2.8036 19 14 9.3971 -7.2877 -0.3295 20 1 8.7030 -6.6763 0.8324 21 1 8.5914 -8.4228 -0.8468 22 1 10.7317 -7.7809 0.0953 23 6 11.0561 -3.6505 -2.5755 24 6 11.8201 -2.8880 -1.4913 25 8 11.7440 -3.6080 -0.2592 26 6 12.4285 -2.9780 0.8254 27 6 8.1982 -1.8479 -1.4964 28 6 7.2939 -0.7137 -1.9881 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.8195 0.6190 31 1 3.0089 0.9471 0.4010 32 1 6.1419 1.2387 -1.7503 33 1 4.6228 1.6540 -2.5803 34 1 4.7632 1.8710 -0.8193 35 1 5.7815 -2.5519 -4.4649 36 1 7.2027 -1.5089 -4.7211 37 1 7.0098 -3.8981 -2.8291 38 1 7.9645 -3.8042 -4.3292 39 1 9.2933 -1.9427 -3.3495 40 1 10.5285 -7.2332 -2.9377 41 1 11.4397 -4.6685 -2.6427 42 1 11.1880 -3.1485 -3.5341 43 1 12.8640 -2.7838 -1.7872 44 1 11.3787 -1.8997 -1.3624 45 1 11.9994 -1.9917 1.0023 46 1 12.3239 -3.5865 1.7237 47 1 13.4851 -2.8754 0.5777 48 1 9.0295 -1.4302 -0.9285 49 1 7.6241 -2.5207 -0.8595 50 1 7.8864 0.0087 -2.5495 51 1 6.8273 -0.2200 -1.1357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569454752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:04 Heat of formation + Delta-G solvation = -33.994173 kcal Electronic energy + Delta-G solvation = -30893.624342 eV Core-core repulsion = 26796.499464 eV Total energy + Delta-G solvation = -4097.124878 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.30585 -38.33667 -37.43663 -36.76659 -34.98891 -33.71940 -32.42712 -31.53781 -30.51863 -30.17497 -28.12464 -27.33801 -25.69916 -25.33357 -24.00267 -23.07885 -22.49492 -20.76341 -20.01803 -19.16967 -18.64438 -17.30720 -16.81359 -16.22124 -15.99503 -15.80896 -15.49486 -15.08740 -14.84391 -14.76922 -14.65295 -14.04974 -13.95385 -13.69420 -13.54555 -13.45562 -13.24063 -13.08803 -12.52572 -12.43831 -12.20935 -11.92197 -11.76458 -11.60461 -11.46165 -11.35423 -10.91606 -10.88987 -10.80235 -10.77003 -10.74207 -10.63801 -10.44010 -10.10164 -9.92177 -9.86916 -9.79492 -9.46180 -9.34258 -8.85056 -8.39404 -8.35835 -6.50216 -5.69770 -3.26321 2.18297 2.58489 2.73843 3.04803 3.44641 3.52586 3.54993 3.78505 4.27592 4.48175 4.55581 4.66130 4.67506 4.82251 4.93139 5.05665 5.14332 5.17654 5.33323 5.38889 5.46255 5.47036 5.55802 5.64778 5.67648 5.70944 5.75086 5.85683 5.88377 5.95355 6.01767 6.07501 6.09289 6.15054 6.25931 6.37470 6.45514 6.58552 6.65636 6.71664 6.75940 6.87531 7.12753 7.23626 7.34435 7.58001 7.65020 7.91859 8.05320 8.33753 8.61858 9.26080 9.89894 10.45002 11.31990 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.002995 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.476243 B = 9345.643579 C = 9710.951606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.189 4.189 3 C 0.169 3.831 4 O -0.351 6.351 5 C 0.071 3.929 6 H 0.090 0.910 7 C -0.178 4.178 8 C 0.516 3.484 9 O -0.527 6.527 10 N -0.601 5.601 11 C 0.113 3.887 12 C -0.131 4.131 13 C 0.177 3.823 14 N -0.571 5.571 15 C -0.234 4.234 16 H 0.055 0.945 17 C 0.020 3.980 18 N -0.892 5.892 19 Si 0.895 3.105 20 H -0.279 1.279 21 H -0.295 1.295 22 H -0.289 1.289 23 C 0.143 3.857 24 C 0.048 3.952 25 O -0.354 6.354 26 C 0.030 3.970 27 C -0.143 4.143 28 C 0.102 3.898 29 H 0.222 0.778 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.251 0.749 41 H 0.103 0.897 42 H 0.039 0.961 43 H 0.023 0.977 44 H 0.026 0.974 45 H 0.028 0.972 46 H 0.073 0.927 47 H 0.025 0.975 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 16.211 4.815 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.189 4.189 3 C 0.093 3.907 4 O -0.270 6.270 5 C 0.010 3.990 6 H 0.108 0.892 7 C -0.236 4.236 8 C 0.302 3.698 9 O -0.402 6.402 10 N -0.336 5.336 11 C -0.009 4.009 12 C -0.170 4.170 13 C 0.069 3.931 14 N -0.290 5.290 15 C -0.364 4.364 16 H 0.072 0.928 17 C -0.180 4.180 18 N -0.535 5.535 19 Si 0.725 3.275 20 H -0.204 1.204 21 H -0.222 1.222 22 H -0.216 1.216 23 C 0.017 3.983 24 C -0.032 4.032 25 O -0.271 6.271 26 C -0.068 4.068 27 C -0.183 4.183 28 C -0.021 4.021 29 H 0.239 0.761 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.120 0.880 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.092 0.908 47 H 0.044 0.956 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.085 0.915 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.707 15.581 4.209 17.119 hybrid contribution 0.295 -0.371 1.144 1.238 sum -5.413 15.210 5.353 17.008 Atomic orbital electron populations 1.24948 0.95868 1.00836 0.97568 1.22447 0.93809 1.00611 1.02083 1.19191 0.85044 1.01362 0.85111 1.88112 1.19167 1.94066 1.25619 1.21916 0.82534 0.96246 0.98277 0.89222 1.22428 1.02561 0.94852 1.03724 1.20175 0.82481 0.81181 0.85965 1.90702 1.49766 1.51114 1.48664 1.48062 1.04845 1.50553 1.30119 1.21770 0.99521 0.92485 0.87131 1.22256 0.96983 0.96579 1.01226 1.20324 0.90755 0.90292 0.91700 1.43730 1.01492 1.23627 1.60164 1.18716 1.21188 0.85253 1.11206 0.92765 1.25026 1.00483 0.96912 0.95566 1.69960 1.42676 1.18632 1.22245 0.86371 0.77239 0.81469 0.82422 1.20364 1.22214 1.21618 1.21038 0.84379 1.02243 0.90659 1.23454 0.97340 0.95333 0.87047 1.88229 1.73991 1.47219 1.17685 1.22626 0.95095 0.97310 0.91727 1.22428 0.98507 0.96588 1.00787 1.22032 0.89872 0.96701 0.93491 0.76138 0.90497 0.90651 0.89921 0.91029 0.91264 0.89687 0.92103 0.90996 0.90726 0.93575 0.93878 0.87976 0.94283 0.95928 0.95562 0.95371 0.90800 0.95598 0.91484 0.91280 0.91497 0.90395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 19.25 29.55 0.57 -1.18 16 2 C -0.19 -2.22 13.73 -37.12 -0.51 -2.73 16 3 C 0.17 1.77 6.22 34.37 0.21 1.99 16 4 O -0.35 -4.93 9.48 -55.09 -0.52 -5.46 16 5 C 0.07 0.86 2.30 -27.88 -0.06 0.80 16 6 H 0.09 0.90 7.08 -51.93 -0.37 0.53 16 7 C -0.18 -1.60 9.10 37.16 0.34 -1.26 16 8 C 0.52 8.21 7.12 -10.99 -0.08 8.14 16 9 O -0.53 -10.68 15.92 -14.31 -0.23 -10.90 16 10 N -0.60 -8.80 2.97 -172.78 -0.51 -9.31 16 11 C 0.11 1.79 6.43 -3.71 -0.02 1.77 16 12 C -0.13 -2.44 5.25 -26.60 -0.14 -2.58 16 13 C 0.18 3.24 2.59 -67.87 -0.18 3.07 16 14 N -0.57 -12.81 2.34 -165.59 -0.39 -13.19 16 15 C -0.23 -6.00 7.60 -15.06 -0.11 -6.11 16 16 H 0.05 1.44 7.09 -52.49 -0.37 1.07 16 17 C 0.02 0.53 4.97 -17.43 -0.09 0.44 16 18 N -0.89 -24.97 11.47 55.49 0.64 -24.33 16 19 Si 0.89 22.00 29.60 -169.99 -5.03 16.96 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C 0.14 3.12 5.70 -4.04 -0.02 3.10 16 24 C 0.05 0.90 6.28 37.16 0.23 1.13 16 25 O -0.35 -7.38 10.18 -35.23 -0.36 -7.74 16 26 C 0.03 0.47 11.01 101.05 1.11 1.58 16 27 C -0.14 -2.23 5.38 -26.63 -0.14 -2.38 16 28 C 0.10 1.23 4.98 -3.73 -0.02 1.21 16 29 H 0.22 1.31 7.80 -54.09 -0.42 0.89 16 30 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.08 0.58 7.87 -51.92 -0.41 0.17 16 32 H 0.08 0.64 5.41 -51.93 -0.28 0.36 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 35 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 36 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.07 1.55 7.61 -51.93 -0.40 1.16 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.05 0.79 7.77 -51.93 -0.40 0.39 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.10 2.62 5.54 -51.93 -0.29 2.33 16 42 H 0.04 0.78 7.88 -51.92 -0.41 0.37 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.07 1.24 7.24 -51.93 -0.38 0.87 16 50 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.08 0.74 4.65 -51.93 -0.24 0.50 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -33.37 409.83 -7.66 -41.03 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.52 Total: -0.22 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 1.09 Total: 6.98 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -0.26 Total: -46.84 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -1.11 Total: -24.10 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.37 -7.66 -41.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569454752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.040 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds