Wall clock time and date at job start Tue Mar 31 2020 21:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42903 * 109.47100 * 82.96895 * 3 2 1 5 5 C 1.42904 * 113.99803 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.47613 * 29.99338 * 5 4 3 7 7 C 1.53004 * 109.46824 * 269.99665 * 5 4 3 8 8 C 1.50694 * 109.47102 * 150.00169 * 5 4 3 9 9 O 1.21284 * 120.00350 * 4.99081 * 8 5 4 10 10 N 1.34783 * 119.99778 * 184.99673 * 8 5 4 11 11 C 1.46923 * 120.62639 * 179.97438 * 10 8 5 12 12 C 1.53195 * 108.89431 * 233.51361 * 11 10 8 13 13 C 1.53068 * 109.29661 * 305.58570 * 12 11 10 14 14 N 1.46499 * 109.45525 * 181.24148 * 13 12 11 15 15 C 1.36938 * 119.99894 * 304.58749 * 14 13 12 16 16 H 1.08000 * 119.99614 * 321.78331 * 15 14 13 17 17 C 1.38811 * 120.00340 * 141.79215 * 15 14 13 18 18 N 1.31614 * 119.99840 * 339.27760 * 17 15 14 19 19 Si 1.86803 * 120.00046 * 159.27522 * 17 15 14 20 20 H 1.48510 * 109.46902 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47295 * 119.99672 * 19 17 15 22 22 H 1.48496 * 109.47267 * 240.00217 * 19 17 15 23 23 C 1.46501 * 120.00381 * 124.57672 * 14 13 12 24 24 C 1.52997 * 109.47138 * 90.00102 * 23 14 13 25 25 O 1.42902 * 109.46979 * 65.00295 * 24 23 14 26 26 C 1.42897 * 114.00133 * 180.02562 * 25 24 23 27 27 C 1.53044 * 109.66144 * 61.14926 * 13 12 11 28 28 C 1.46929 * 120.63153 * 359.97438 * 10 8 5 29 29 H 4.38437 * 5.44508 * 180.02562 * 4 1 2 30 30 H 1.09000 * 109.47317 * 322.96344 * 3 2 1 31 31 H 1.09010 * 109.47008 * 202.96531 * 3 2 1 32 32 H 1.09000 * 109.47472 * 179.97438 * 7 5 4 33 33 H 1.08998 * 109.47261 * 300.00124 * 7 5 4 34 34 H 1.09000 * 109.47158 * 60.00130 * 7 5 4 35 35 H 1.09001 * 109.59251 * 353.38048 * 11 10 8 36 36 H 1.09012 * 109.58215 * 113.66247 * 11 10 8 37 37 H 1.09000 * 109.49576 * 65.39727 * 12 11 10 38 38 H 1.08999 * 109.49455 * 185.49130 * 12 11 10 39 39 H 1.09007 * 109.34560 * 301.12660 * 13 12 11 40 40 H 0.97007 * 119.99565 * 180.02562 * 18 17 15 41 41 H 1.08996 * 109.47470 * 210.00774 * 23 14 13 42 42 H 1.09009 * 109.46903 * 330.00686 * 23 14 13 43 43 H 1.09001 * 109.47673 * 185.00030 * 24 23 14 44 44 H 1.09001 * 109.47495 * 305.00635 * 24 23 14 45 45 H 1.08997 * 109.47869 * 59.99794 * 26 25 24 46 46 H 1.09004 * 109.47429 * 180.02562 * 26 25 24 47 47 H 1.09006 * 109.47089 * 299.99429 * 26 25 24 48 48 H 1.08998 * 109.49663 * 178.75050 * 27 13 12 49 49 H 1.08997 * 109.51829 * 58.67028 * 27 13 12 50 50 H 1.09001 * 109.58020 * 246.19857 * 28 10 8 51 51 H 1.08999 * 109.58181 * 6.47848 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 8 3.1224 -0.1640 -1.3372 5 6 4.5469 -0.1778 -1.4490 6 1 4.9794 -0.5827 -0.5341 7 6 5.0553 1.2490 -1.6654 8 6 4.9507 -1.0376 -2.6189 9 8 4.1023 -1.5111 -3.3449 10 7 6.2546 -1.2806 -2.8584 11 6 6.6637 -2.1173 -3.9947 12 6 7.5769 -3.2361 -3.4835 13 6 8.7399 -2.6216 -2.7006 14 7 9.6316 -3.6868 -2.2353 15 6 9.1336 -4.7166 -1.4825 16 1 8.3739 -4.5239 -0.7395 17 6 9.6052 -6.0079 -1.6743 18 7 10.1992 -6.3306 -2.8036 19 14 9.3971 -7.2877 -0.3295 20 1 8.7030 -6.6763 0.8324 21 1 8.5914 -8.4228 -0.8468 22 1 10.7317 -7.7809 0.0953 23 6 11.0561 -3.6505 -2.5755 24 6 11.8201 -2.8880 -1.4913 25 8 11.7440 -3.6080 -0.2592 26 6 12.4285 -2.9780 0.8254 27 6 8.1982 -1.8479 -1.4964 28 6 7.2939 -0.7137 -1.9881 29 1 -1.0499 0.0002 -0.0001 30 1 3.0097 -0.8195 0.6190 31 1 3.0089 0.9471 0.4010 32 1 6.1419 1.2387 -1.7503 33 1 4.6228 1.6540 -2.5803 34 1 4.7632 1.8710 -0.8193 35 1 5.7815 -2.5519 -4.4649 36 1 7.2027 -1.5089 -4.7211 37 1 7.0098 -3.8981 -2.8291 38 1 7.9645 -3.8042 -4.3292 39 1 9.2933 -1.9427 -3.3495 40 1 10.5285 -7.2332 -2.9377 41 1 11.4397 -4.6685 -2.6427 42 1 11.1880 -3.1485 -3.5341 43 1 12.8640 -2.7838 -1.7872 44 1 11.3787 -1.8997 -1.3624 45 1 11.9994 -1.9917 1.0023 46 1 12.3239 -3.5865 1.7237 47 1 13.4851 -2.8754 0.5777 48 1 9.0295 -1.4302 -0.9285 49 1 7.6241 -2.5207 -0.8595 50 1 7.8864 0.0087 -2.5495 51 1 6.8273 -0.2200 -1.1357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569454752.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:03 Heat of formation + Delta-G solvation = -55.041690 kcal Electronic energy + Delta-G solvation = -30894.537031 eV Core-core repulsion = 26796.499464 eV Total energy + Delta-G solvation = -4098.037567 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47556 -39.49384 -38.77357 -38.14282 -36.54347 -34.57941 -33.84099 -32.94510 -32.01271 -31.30220 -29.70229 -28.09907 -27.11725 -26.70235 -25.40767 -24.33970 -23.78003 -22.26782 -21.49489 -20.32566 -19.59541 -18.39716 -18.07121 -17.68381 -17.26255 -17.00671 -16.67138 -16.53488 -16.43267 -15.96052 -15.69980 -15.57624 -15.44111 -15.17192 -14.84426 -14.58068 -14.36295 -14.21097 -13.66348 -13.51101 -13.37592 -13.25677 -13.19741 -12.92572 -12.87035 -12.72910 -12.58192 -12.34173 -12.28180 -12.17923 -12.04371 -11.77650 -11.70239 -11.57578 -11.50202 -11.43456 -11.05771 -10.83815 -10.45016 -10.36081 -10.24902 -9.63363 -8.39769 -7.69090 -5.27607 1.33323 1.44173 1.48545 1.54880 1.55564 1.80613 1.99760 2.58754 2.97327 3.27508 3.37649 3.43090 3.64133 3.64779 3.85173 3.99337 4.07194 4.16483 4.24568 4.26339 4.39306 4.45169 4.47898 4.49676 4.58162 4.65159 4.69160 4.73087 4.75749 4.79362 4.83895 4.87228 4.88658 4.93728 4.97145 5.00331 5.05276 5.15799 5.24135 5.26977 5.48153 5.65249 5.69111 5.79620 5.90998 5.99874 6.43234 6.55795 6.58535 6.74643 7.14321 7.33106 8.02838 8.51032 9.26723 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.002995 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.476243 B = 9345.643579 C = 9710.951606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.239 4.239 3 C 0.163 3.837 4 O -0.387 6.387 5 C 0.074 3.926 6 H 0.114 0.886 7 C -0.171 4.171 8 C 0.506 3.494 9 O -0.583 6.583 10 N -0.599 5.599 11 C 0.123 3.877 12 C -0.119 4.119 13 C 0.172 3.828 14 N -0.583 5.583 15 C -0.213 4.213 16 H 0.042 0.958 17 C -0.030 4.030 18 N -0.919 5.919 19 Si 0.936 3.064 20 H -0.274 1.274 21 H -0.302 1.302 22 H -0.295 1.295 23 C 0.139 3.861 24 C 0.057 3.943 25 O -0.398 6.398 26 C 0.027 3.973 27 C -0.131 4.131 28 C 0.106 3.894 29 H 0.253 0.747 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.031 0.969 38 H 0.049 0.951 39 H 0.070 0.930 40 H 0.244 0.756 41 H 0.061 0.939 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.048 0.952 45 H 0.047 0.953 46 H 0.077 0.923 47 H 0.043 0.957 48 H 0.079 0.921 49 H 0.039 0.961 50 H 0.101 0.899 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.696 19.917 6.451 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.239 4.239 3 C 0.088 3.912 4 O -0.306 6.306 5 C 0.013 3.987 6 H 0.132 0.868 7 C -0.228 4.228 8 C 0.295 3.705 9 O -0.462 6.462 10 N -0.333 5.333 11 C 0.000 4.000 12 C -0.159 4.159 13 C 0.065 3.935 14 N -0.303 5.303 15 C -0.345 4.345 16 H 0.059 0.941 17 C -0.226 4.226 18 N -0.565 5.565 19 Si 0.767 3.233 20 H -0.199 1.199 21 H -0.229 1.229 22 H -0.222 1.222 23 C 0.013 3.987 24 C -0.021 4.021 25 O -0.317 6.317 26 C -0.070 4.070 27 C -0.171 4.171 28 C -0.016 4.016 29 H 0.270 0.730 30 H 0.103 0.897 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.096 0.904 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.058 0.942 50 H 0.119 0.881 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.274 19.333 5.883 20.885 hybrid contribution 0.125 -1.497 0.643 1.634 sum -5.149 17.836 6.526 19.678 Atomic orbital electron populations 1.25872 0.96903 0.99492 0.95908 1.23146 0.95071 1.02034 1.03636 1.19463 0.84685 1.03291 0.83778 1.88062 1.20254 1.94436 1.27871 1.22047 0.82222 0.97416 0.97013 0.86838 1.22430 1.03438 0.92654 1.04273 1.21060 0.82108 0.80860 0.86488 1.90672 1.51268 1.53439 1.50846 1.48152 1.05389 1.49850 1.29870 1.21544 0.98179 0.92202 0.88119 1.22073 0.97342 0.96838 0.99608 1.20563 0.89987 0.89639 0.93262 1.43900 1.02532 1.23806 1.60058 1.18712 1.19448 0.85930 1.10368 0.94055 1.25482 1.01856 0.98394 0.96855 1.70067 1.44703 1.18314 1.23463 0.85701 0.76564 0.79956 0.81097 1.19851 1.22947 1.22245 1.20974 0.84266 1.00691 0.92768 1.23239 0.98043 0.95142 0.85703 1.88152 1.75225 1.49116 1.19214 1.22799 0.95848 0.98031 0.90334 1.22241 0.99099 0.96905 0.98893 1.22262 0.89007 0.95609 0.94721 0.73044 0.89710 0.87524 0.88005 0.92436 0.88513 0.91792 0.89262 0.94995 0.93190 0.91225 0.94699 0.92108 0.92820 0.93965 0.93431 0.93403 0.90399 0.93847 0.90210 0.94226 0.88106 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 19.25 74.32 1.43 -1.62 16 2 C -0.24 -5.35 13.73 31.12 0.43 -4.93 16 3 C 0.16 3.14 6.22 70.18 0.44 3.58 16 4 O -0.39 -10.43 9.48 -129.99 -1.23 -11.67 16 5 C 0.07 1.60 2.30 29.85 0.07 1.67 16 6 H 0.11 1.88 7.08 -2.39 -0.02 1.86 16 7 C -0.17 -2.37 9.10 71.98 0.65 -1.72 16 8 C 0.51 15.66 7.12 87.65 0.62 16.29 16 9 O -0.58 -24.21 15.92 15.95 0.25 -23.95 16 10 N -0.60 -16.44 2.97 -818.94 -2.44 -18.88 16 11 C 0.12 3.83 6.43 86.36 0.55 4.38 16 12 C -0.12 -4.53 5.25 30.68 0.16 -4.37 16 13 C 0.17 6.07 2.59 45.03 0.12 6.19 16 14 N -0.58 -26.05 2.34 -677.82 -1.58 -27.64 16 15 C -0.21 -11.16 7.60 84.03 0.64 -10.52 16 16 H 0.04 2.25 7.09 -2.91 -0.02 2.23 16 17 C -0.03 -1.65 4.97 84.86 0.42 -1.23 16 18 N -0.92 -53.49 11.47 21.65 0.25 -53.25 16 19 Si 0.94 46.47 29.60 68.60 2.03 48.50 16 20 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 21 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 22 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 23 C 0.14 5.98 5.70 86.38 0.49 6.48 16 24 C 0.06 2.03 6.28 71.98 0.45 2.49 16 25 O -0.40 -16.03 10.18 -148.98 -1.52 -17.54 16 26 C 0.03 0.76 11.01 113.37 1.25 2.01 16 27 C -0.13 -3.75 5.38 30.66 0.16 -3.59 16 28 C 0.11 2.10 4.98 86.35 0.43 2.53 16 29 H 0.25 2.41 7.80 -4.42 -0.03 2.38 16 30 H 0.09 1.42 8.08 -2.39 -0.02 1.41 16 31 H 0.11 1.30 7.87 -2.38 -0.02 1.28 16 32 H 0.10 1.00 5.41 -2.39 -0.01 0.98 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.10 0.85 7.87 -2.39 -0.02 0.83 16 35 H 0.06 2.29 7.01 -2.39 -0.02 2.27 16 36 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 37 H 0.03 1.44 7.61 -2.39 -0.02 1.42 16 38 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.07 2.16 7.77 -2.38 -0.02 2.15 16 40 H 0.24 14.00 8.31 -92.70 -0.77 13.23 16 41 H 0.06 3.19 5.54 -2.39 -0.01 3.18 16 42 H 0.05 2.08 7.88 -2.38 -0.02 2.06 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 47 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 49 H 0.04 1.37 7.24 -2.39 -0.02 1.35 16 50 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 51 H 0.11 1.53 4.65 -2.39 -0.01 1.52 16 Total: -1.00 -78.65 409.83 4.99 -73.66 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.90 Total: 13.13 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 8.32 Total: 17.63 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -3.77 Total: -99.76 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -2.50 Total: -53.16 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -78.65 4.99 -73.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569454752.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.623 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds