Wall clock time and date at job start Tue Mar 31 2020 21:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00169 * 2 1 4 4 C 1.53000 * 109.47015 * 124.99915 * 3 2 1 5 5 O 1.42900 * 109.46933 * 180.02562 * 4 3 2 6 6 C 1.42899 * 114.00286 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47054 * 29.99808 * 6 5 4 8 8 C 1.53003 * 109.47123 * 270.00180 * 6 5 4 9 9 C 1.50700 * 109.47425 * 149.99997 * 6 5 4 10 10 O 1.21282 * 119.99988 * 4.99508 * 9 6 5 11 11 N 1.34771 * 120.00036 * 185.00392 * 9 6 5 12 12 C 1.47487 * 125.66692 * 0.02562 * 11 9 6 13 13 C 1.55018 * 104.90006 * 155.95013 * 12 11 9 14 14 C 1.54516 * 101.53380 * 36.37680 * 13 12 11 15 15 C 1.47188 * 125.66736 * 179.97438 * 11 9 6 16 16 C 1.52066 * 110.12215 * 207.08540 * 14 13 12 17 17 N 1.47293 * 108.69854 * 187.41665 * 16 14 13 18 18 C 1.36940 * 121.05832 * 229.26507 * 17 16 14 19 19 H 1.07994 * 119.99865 * 154.09618 * 18 17 16 20 20 C 1.38815 * 119.99895 * 334.10016 * 18 17 16 21 21 N 1.31617 * 119.99699 * 343.39423 * 20 18 17 22 22 Si 1.86793 * 119.99999 * 163.39567 * 20 18 17 23 23 H 1.48501 * 109.47163 * 270.00004 * 22 20 18 24 24 H 1.48500 * 109.46980 * 29.99929 * 22 20 18 25 25 H 1.48497 * 109.47444 * 150.00066 * 22 20 18 26 26 C 1.47161 * 117.88340 * 48.99527 * 17 16 14 27 27 C 1.53293 * 108.49883 * 309.07940 * 26 17 16 28 28 O 1.42060 * 110.33647 * 83.93420 * 14 13 12 29 29 H 1.07998 * 119.99920 * 180.02562 * 1 2 3 30 30 H 1.07994 * 119.99773 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00160 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46888 * 4.99846 * 3 2 1 33 33 H 1.09004 * 109.46835 * 245.00068 * 3 2 1 34 34 H 1.09001 * 109.47349 * 60.00213 * 4 3 2 35 35 H 1.08995 * 109.47312 * 300.00045 * 4 3 2 36 36 H 1.08996 * 109.47357 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.46852 * 299.99752 * 8 6 5 38 38 H 1.08992 * 109.46900 * 59.99379 * 8 6 5 39 39 H 1.09002 * 110.35078 * 37.09400 * 12 11 9 40 40 H 1.08997 * 110.44575 * 274.85757 * 12 11 9 41 41 H 1.09003 * 111.01378 * 278.31459 * 13 12 11 42 42 H 1.09007 * 111.01461 * 154.44156 * 13 12 11 43 43 H 1.09002 * 109.90504 * 62.17086 * 15 11 9 44 44 H 1.09000 * 109.90696 * 300.91401 * 15 11 9 45 45 H 1.09000 * 109.57794 * 67.61993 * 16 14 13 46 46 H 1.09002 * 109.46422 * 307.14503 * 16 14 13 47 47 H 0.97003 * 119.99468 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.63584 * 68.77888 * 26 17 16 49 49 H 1.09000 * 109.63350 * 189.37569 * 26 17 16 50 50 H 1.09000 * 109.51361 * 172.90204 * 27 26 17 51 51 H 1.08996 * 109.51095 * 293.05777 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 8 3.7492 2.5708 1.1820 6 6 4.6886 2.6996 2.2510 7 1 5.0656 1.7140 2.5241 8 6 4.0007 3.3356 3.4606 9 6 5.8357 3.5716 1.8095 10 8 5.8047 4.1105 0.7234 11 7 6.8960 3.7525 2.6214 12 6 7.0640 3.1598 3.9615 13 6 8.5960 3.1346 4.1970 14 6 9.0352 4.4494 3.5144 15 6 8.0793 4.5735 2.3178 16 6 10.4734 4.3344 3.0340 17 7 10.9173 5.6537 2.5526 18 6 11.5277 5.7927 1.3347 19 1 11.4744 6.7341 0.8082 20 6 12.2149 4.7233 0.7768 21 7 12.5637 3.7009 1.5287 22 14 12.6447 4.7355 -1.0410 23 1 11.5424 4.1094 -1.8145 24 1 12.8346 6.1365 -1.4954 25 1 13.8987 3.9704 -1.2584 26 6 10.6786 6.8187 3.4194 27 6 9.2045 6.8179 3.8403 28 8 8.8766 5.5448 4.4050 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8501 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 3.7400 0.5065 1.0921 35 1 2.4773 1.2356 2.1130 36 1 4.7171 3.4335 4.2762 37 1 3.6237 4.3212 3.1875 38 1 3.1711 2.7050 3.7799 39 1 6.6606 2.1474 3.9815 40 1 6.5747 3.7770 4.7149 41 1 9.0518 2.2713 3.7121 42 1 8.8281 3.1505 5.2619 43 1 7.7845 5.6145 2.1848 44 1 8.5652 4.2045 1.4146 45 1 10.5302 3.6099 2.2216 46 1 11.1078 4.0135 3.8603 47 1 13.0436 2.9535 1.1387 48 1 11.3119 6.7530 4.3041 49 1 10.9027 7.7344 2.8723 50 1 9.0372 7.5991 4.5818 51 1 8.5769 7.0020 2.9683 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675418281.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:35 Heat of formation + Delta-G solvation = -91.112037 kcal Electronic energy + Delta-G solvation = -30867.721847 eV Core-core repulsion = 26768.120153 eV Total energy + Delta-G solvation = -4099.601695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76515 -40.45223 -38.88311 -37.54119 -36.29894 -36.01184 -33.65131 -33.24415 -32.20349 -30.45611 -29.96049 -29.21879 -27.66848 -25.67601 -25.00383 -24.26245 -23.61600 -22.65594 -21.03297 -20.53341 -20.21687 -18.92174 -18.45146 -18.06360 -17.51800 -16.99793 -16.87479 -16.60607 -16.18291 -16.10491 -15.86122 -15.74224 -15.28913 -15.19578 -14.80838 -14.62949 -14.53000 -14.26725 -14.07548 -13.52680 -13.47822 -13.42088 -13.30240 -13.17420 -13.01723 -12.85946 -12.69819 -12.51107 -12.31546 -12.20409 -12.17856 -12.15278 -12.08241 -11.98007 -11.78738 -11.18698 -11.04681 -10.81776 -10.60162 -10.47581 -10.27023 -9.76853 -8.75669 -7.94646 -5.38753 1.32143 1.39672 1.43827 1.47499 1.49761 1.64630 2.42736 2.72142 2.80504 3.18972 3.31613 3.47591 3.61409 3.75453 3.83762 3.91956 4.00731 4.08010 4.14055 4.20034 4.24357 4.27157 4.35383 4.44165 4.44927 4.48252 4.55140 4.61463 4.68390 4.74466 4.78787 4.79210 4.88166 4.91079 4.99766 5.02668 5.03736 5.09912 5.13736 5.18465 5.20272 5.23209 5.49279 5.57952 5.72646 5.84856 6.08881 6.25647 6.33413 6.45737 7.04252 7.04486 7.72714 8.25260 9.11316 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002865 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.212288 B = 9769.941089 C =11048.378709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.162 4.162 3 C -0.094 4.094 4 C 0.060 3.940 5 O -0.392 6.392 6 C 0.084 3.916 7 H 0.117 0.883 8 C -0.166 4.166 9 C 0.515 3.485 10 O -0.584 6.584 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.113 4.113 14 C 0.093 3.907 15 C 0.108 3.892 16 C 0.172 3.828 17 N -0.615 5.615 18 C -0.260 4.260 19 H 0.066 0.934 20 C -0.045 4.045 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.293 1.293 24 H -0.269 1.269 25 H -0.289 1.289 26 C 0.105 3.895 27 C 0.050 3.950 28 O -0.369 6.369 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.121 0.879 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.117 0.883 43 H 0.052 0.948 44 H 0.039 0.961 45 H 0.063 0.937 46 H 0.013 0.987 47 H 0.252 0.748 48 H 0.027 0.973 49 H 0.068 0.932 50 H 0.125 0.875 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.083 -7.768 9.013 24.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.180 4.180 3 C -0.131 4.131 4 C -0.015 4.015 5 O -0.312 6.312 6 C 0.023 3.977 7 H 0.134 0.866 8 C -0.223 4.223 9 C 0.304 3.696 10 O -0.464 6.464 11 N -0.345 5.345 12 C -0.020 4.020 13 C -0.151 4.151 14 C 0.052 3.948 15 C -0.015 4.015 16 C 0.046 3.954 17 N -0.339 5.339 18 C -0.390 4.390 19 H 0.084 0.916 20 C -0.241 4.241 21 N -0.575 5.575 22 Si 0.787 3.213 23 H -0.220 1.220 24 H -0.194 1.194 25 H -0.215 1.215 26 C -0.020 4.020 27 C -0.028 4.028 28 O -0.287 6.287 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.139 0.861 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.069 0.931 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.135 0.865 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.031 0.969 47 H 0.061 0.939 48 H 0.045 0.955 49 H 0.086 0.914 50 H 0.143 0.857 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.163 -7.483 8.387 23.962 hybrid contribution 1.138 0.173 -1.677 2.034 sum -20.025 -7.310 6.709 22.348 Atomic orbital electron populations 1.24080 0.95696 1.02844 0.99418 1.22800 0.96267 0.97497 1.01392 1.20634 0.97758 0.96773 0.97945 1.22743 0.94267 0.84983 0.99548 1.88003 1.54206 1.39155 1.49796 1.21903 0.87691 0.99412 0.88648 0.86562 1.22285 1.02561 1.01762 0.95681 1.21045 0.83049 0.82068 0.83410 1.90693 1.80271 1.51415 1.23978 1.48635 1.17845 1.48913 1.19138 1.22788 0.96353 1.00455 0.82413 1.22795 0.94932 0.93975 1.03384 1.22362 0.94622 0.89044 0.88821 1.22136 0.86042 0.94843 0.98483 1.20940 0.89257 0.88173 0.97060 1.44360 1.68450 1.03244 1.17878 1.19450 1.25985 0.99043 0.94559 0.91624 1.25644 0.98311 0.98372 1.01751 1.70126 1.42409 1.10037 1.34946 0.85401 0.76829 0.77941 0.81161 1.22039 1.19381 1.21484 1.21774 0.95258 0.91122 0.93885 1.23139 0.95065 0.85598 0.98964 1.87663 1.87948 1.14855 1.38265 0.86762 0.88371 0.86085 0.91059 0.91634 0.92130 0.90693 0.88741 0.93053 0.88438 0.86675 0.88449 0.89159 0.86503 0.92961 0.94228 0.91819 0.96855 0.93908 0.95471 0.91403 0.85682 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 14.32 67.78 0.97 -1.12 16 2 C -0.16 -2.15 9.52 25.65 0.24 -1.90 16 3 C -0.09 -1.65 6.03 29.85 0.18 -1.47 16 4 C 0.06 1.07 5.73 71.98 0.41 1.48 16 5 O -0.39 -10.48 9.53 -129.99 -1.24 -11.72 16 6 C 0.08 1.92 2.49 29.85 0.07 2.00 16 7 H 0.12 1.87 7.26 -2.39 -0.02 1.85 16 8 C -0.17 -2.68 9.39 71.98 0.68 -2.00 16 9 C 0.51 17.56 7.24 87.66 0.63 18.20 16 10 O -0.58 -26.81 16.84 15.95 0.27 -26.54 16 11 N -0.61 -19.31 3.33 -812.31 -2.71 -22.02 16 12 C 0.10 2.11 5.35 86.88 0.46 2.58 16 13 C -0.11 -2.96 6.21 31.80 0.20 -2.76 16 14 C 0.09 3.42 0.80 -10.36 -0.01 3.41 16 15 C 0.11 4.31 5.96 86.47 0.52 4.83 16 16 C 0.17 8.08 3.94 85.92 0.34 8.42 16 17 N -0.61 -30.87 2.99 -699.51 -2.09 -32.96 16 18 C -0.26 -14.49 9.66 84.03 0.81 -13.68 16 19 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16 20 C -0.04 -2.53 4.96 84.86 0.42 -2.11 16 21 N -0.93 -54.32 11.13 21.65 0.24 -54.08 16 22 Si 0.96 46.22 29.58 68.60 2.03 48.25 16 23 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 C 0.10 4.30 6.72 86.35 0.58 4.88 16 27 C 0.05 1.69 6.76 72.08 0.49 2.18 16 28 O -0.37 -12.85 10.25 -148.97 -1.53 -14.38 16 29 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 30 H 0.10 1.09 7.84 -2.91 -0.02 1.07 16 31 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.07 1.29 7.79 -2.39 -0.02 1.27 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 35 H 0.07 0.96 7.87 -2.39 -0.02 0.94 16 36 H 0.09 1.19 5.56 -2.39 -0.01 1.18 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.10 1.04 7.87 -2.39 -0.02 1.02 16 39 H 0.12 1.51 7.33 -2.39 -0.02 1.49 16 40 H 0.10 1.69 7.16 -2.39 -0.02 1.67 16 41 H 0.09 2.42 8.01 -2.39 -0.02 2.40 16 42 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 43 H 0.05 2.24 6.03 -2.39 -0.01 2.22 16 44 H 0.04 1.90 7.59 -2.39 -0.02 1.88 16 45 H 0.06 3.41 5.88 -2.39 -0.01 3.40 16 46 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 48 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.07 2.66 7.96 -2.39 -0.02 2.64 16 50 H 0.13 3.26 8.14 -2.39 -0.02 3.24 16 51 H 0.04 1.40 6.24 -2.39 -0.01 1.39 16 Total: -1.00 -77.32 399.68 2.88 -74.45 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.90 Total: 16.08 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 7.00 Total: 22.91 kcal Atomic # 7 Polarization: -104.50 SS G_CDS: -4.56 Total: -109.05 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.50 Total: -52.63 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -77.32 2.88 -74.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675418281.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.666 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds