Wall clock time and date at job start Tue Mar 31 2020 21:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00479 * 2 1 4 4 C 1.53002 * 109.47040 * 125.27867 * 3 2 1 5 5 O 1.42896 * 109.46904 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99950 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46912 * 329.99897 * 6 5 4 8 8 C 1.53006 * 109.47063 * 89.99651 * 6 5 4 9 9 C 1.50698 * 109.47407 * 209.99477 * 6 5 4 10 10 O 1.21281 * 119.99823 * 348.50601 * 9 6 5 11 11 N 1.34772 * 120.00351 * 168.50068 * 9 6 5 12 12 C 1.47488 * 125.66535 * 184.73782 * 11 9 6 13 13 C 1.55252 * 104.78315 * 155.91424 * 12 11 9 14 14 C 1.54519 * 101.43151 * 36.67461 * 13 12 11 15 15 C 1.47189 * 125.65885 * 5.04048 * 11 9 6 16 16 C 1.52508 * 110.06000 * 206.74196 * 14 13 12 17 17 N 1.47308 * 108.40970 * 287.84848 * 16 14 13 18 18 C 1.36943 * 121.05830 * 130.61151 * 17 16 14 19 19 H 1.08002 * 119.99829 * 209.42875 * 18 17 16 20 20 C 1.38810 * 120.00377 * 29.42285 * 18 17 16 21 21 N 1.31620 * 119.99659 * 9.33834 * 20 18 17 22 22 Si 1.86790 * 120.00206 * 189.33499 * 20 18 17 23 23 H 1.48504 * 109.47424 * 60.00114 * 22 20 18 24 24 H 1.48499 * 109.47096 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47263 * 300.00274 * 22 20 18 26 26 C 1.47156 * 117.87916 * 310.63516 * 17 16 14 27 27 C 1.53286 * 108.53942 * 51.13280 * 26 17 16 28 28 O 1.42063 * 110.33392 * 83.74910 * 14 13 12 29 29 H 1.08004 * 119.99486 * 359.71987 * 1 2 3 30 30 H 1.07994 * 120.00706 * 179.72561 * 1 2 3 31 31 H 1.08004 * 119.99486 * 180.28012 * 2 1 3 32 32 H 1.08997 * 109.46753 * 245.27755 * 3 2 1 33 33 H 1.09000 * 109.47102 * 5.27905 * 3 2 1 34 34 H 1.09000 * 109.46987 * 300.00305 * 4 3 2 35 35 H 1.09000 * 109.47142 * 60.00062 * 4 3 2 36 36 H 1.09002 * 109.47180 * 66.79571 * 8 6 5 37 37 H 1.08998 * 109.46789 * 186.79148 * 8 6 5 38 38 H 1.08995 * 109.47030 * 306.79006 * 8 6 5 39 39 H 1.08993 * 110.35174 * 274.86733 * 12 11 9 40 40 H 1.08997 * 110.35079 * 37.15292 * 12 11 9 41 41 H 1.09008 * 111.21497 * 278.58590 * 13 12 11 42 42 H 1.08996 * 110.90645 * 154.63933 * 13 12 11 43 43 H 1.08993 * 109.91241 * 300.84104 * 15 11 9 44 44 H 1.09001 * 109.91036 * 61.92871 * 15 11 9 45 45 H 1.08996 * 109.68276 * 47.58124 * 16 14 13 46 46 H 1.08996 * 109.67602 * 168.12679 * 16 14 13 47 47 H 0.97003 * 120.00197 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.62243 * 291.42247 * 26 17 16 49 49 H 1.09001 * 109.78430 * 170.94118 * 26 17 16 50 50 H 1.08997 * 109.51371 * 187.15925 * 27 26 17 51 51 H 1.08998 * 109.51251 * 67.01018 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0401 1.3300 1.1776 5 8 3.7543 2.5677 1.1779 6 6 4.6982 2.6938 2.2433 7 1 4.3499 2.1265 3.1064 8 6 6.0548 2.1506 1.7897 9 6 4.8393 4.1461 2.6203 10 8 4.3635 5.0060 1.9096 11 7 5.4940 4.4893 3.7472 12 6 5.6210 5.8565 4.2854 13 6 5.8754 5.6622 5.8046 14 6 6.7613 4.3962 5.8073 15 6 6.2063 3.5625 4.6418 16 6 6.5997 3.6474 7.1260 17 7 7.2746 4.4183 8.1844 18 6 6.6407 4.7032 9.3644 19 1 6.8918 5.6014 9.9092 20 6 5.6753 3.8378 9.8604 21 7 5.4979 2.6597 9.3009 22 14 4.6283 4.3450 11.3217 23 1 3.8676 5.5746 10.9827 24 1 3.6801 3.2517 11.6545 25 1 5.5052 4.6119 12.4901 26 6 8.6514 4.8729 7.9331 27 6 8.6876 5.5934 6.5806 28 8 8.1197 4.7438 5.5790 29 1 -0.5399 0.9354 0.0046 30 1 -0.5401 -0.9352 -0.0045 31 1 1.8499 -0.9354 -0.0046 32 1 2.6175 1.4047 -0.9335 33 1 1.3591 2.1314 0.0946 34 1 2.4862 1.2302 2.1111 35 1 3.7446 0.5037 1.0831 36 1 6.4591 2.7913 1.0060 37 1 6.7412 2.1348 2.6363 38 1 5.9304 1.1389 1.4039 39 1 6.4622 6.3704 3.8203 40 1 4.6987 6.4146 4.1242 41 1 4.9430 5.4878 6.3416 42 1 6.4111 6.5151 6.2215 43 1 5.5165 2.8084 5.0206 44 1 7.0232 3.0815 4.1039 45 1 5.5407 3.5469 7.3637 46 1 7.0536 2.6598 7.0453 47 1 4.8235 2.0547 9.6476 48 1 9.3218 4.0138 7.9083 49 1 8.9634 5.5581 8.7213 50 1 9.7200 5.8250 6.3190 51 1 8.1115 6.5165 6.6443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675418282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:39 Heat of formation + Delta-G solvation = -70.836439 kcal Electronic energy + Delta-G solvation = -30831.338469 eV Core-core repulsion = 26732.615990 eV Total energy + Delta-G solvation = -4098.722479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.40573 -39.14927 -37.82809 -36.04830 -35.28662 -34.51995 -32.28494 -31.39538 -30.97907 -29.62215 -28.99001 -27.45652 -25.84727 -24.72115 -23.52034 -23.10689 -22.09943 -21.45263 -20.17422 -19.31050 -18.82204 -17.29794 -17.26951 -16.56543 -16.28685 -16.09793 -15.58114 -15.26335 -14.80307 -14.72854 -14.46405 -14.32906 -14.00165 -13.83197 -13.56235 -13.43059 -13.10831 -12.98939 -12.77329 -12.59479 -12.35032 -12.27702 -12.10897 -11.89866 -11.71554 -11.40517 -11.34544 -11.18586 -11.08967 -10.95015 -10.92888 -10.72402 -10.34976 -10.29211 -10.08683 -9.97105 -9.67565 -9.61487 -9.44960 -9.06900 -8.62235 -8.48095 -6.77524 -5.91935 -3.39833 1.93428 2.70334 2.77904 3.29860 3.35954 3.36351 3.72368 4.12730 4.35330 4.45334 4.66952 4.77101 4.81904 4.88076 4.88732 5.02348 5.03605 5.11625 5.20133 5.26363 5.34917 5.38881 5.43055 5.53332 5.59586 5.60479 5.68690 5.72329 5.75849 5.76556 5.81030 5.86814 5.97385 6.02470 6.10001 6.27634 6.31733 6.31879 6.40001 6.44802 6.49718 6.57452 6.72992 6.97302 6.99777 7.37220 7.62885 7.63822 7.84289 8.27422 8.27922 9.04347 9.65244 10.23696 11.16088 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002921 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.101600 B = 9581.954031 C =10991.075521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.092 4.092 4 C 0.063 3.937 5 O -0.359 6.359 6 C 0.076 3.924 7 H 0.087 0.913 8 C -0.173 4.173 9 C 0.532 3.468 10 O -0.529 6.529 11 N -0.612 5.612 12 C 0.112 3.888 13 C -0.144 4.144 14 C 0.085 3.915 15 C 0.112 3.888 16 C 0.164 3.836 17 N -0.592 5.592 18 C -0.253 4.253 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.907 5.907 22 Si 0.907 3.093 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.377 6.377 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.029 0.971 47 H 0.256 0.744 48 H 0.027 0.973 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.675 -3.270 -14.016 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.172 4.172 3 C -0.129 4.129 4 C -0.014 4.014 5 O -0.277 6.277 6 C 0.015 3.985 7 H 0.104 0.896 8 C -0.230 4.230 9 C 0.319 3.681 10 O -0.405 6.405 11 N -0.348 5.348 12 C -0.010 4.010 13 C -0.182 4.182 14 C 0.043 3.957 15 C -0.011 4.011 16 C 0.038 3.962 17 N -0.316 5.316 18 C -0.382 4.382 19 H 0.085 0.915 20 C -0.193 4.193 21 N -0.551 5.551 22 Si 0.736 3.264 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.208 1.208 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.296 6.296 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.047 0.953 47 H 0.066 0.934 48 H 0.045 0.955 49 H 0.081 0.919 50 H 0.101 0.899 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.037 -2.885 -14.698 15.117 hybrid contribution -0.535 -0.048 1.324 1.429 sum -2.572 -2.933 -13.374 13.932 Atomic orbital electron populations 1.23913 0.95917 1.02071 1.00584 1.22808 0.96030 0.97994 1.00371 1.20635 0.97916 0.95917 0.98476 1.22550 0.93863 0.86341 0.98639 1.88000 1.54042 1.37313 1.48391 1.21829 0.91355 0.93898 0.91453 0.89572 1.22282 0.95687 1.01923 1.03147 1.19932 0.78009 0.90482 0.79685 1.90692 1.48138 1.51501 1.50122 1.48512 1.52802 1.09795 1.23640 1.22328 1.01444 0.83264 0.93998 1.23246 1.01539 0.99685 0.93713 1.22658 0.82145 0.94582 0.96319 1.22069 0.96023 0.92492 0.90526 1.21240 1.00675 0.91659 0.82654 1.43997 1.08775 1.64165 1.14653 1.19117 1.17886 1.02940 0.98243 0.91535 1.25139 1.01139 0.94819 0.98222 1.69919 1.35403 1.07199 1.42594 0.86310 0.80043 0.77537 0.82503 1.20900 1.21507 1.20820 1.21597 0.88430 0.97092 0.94594 1.23114 0.97137 0.93020 0.89908 1.87648 1.25084 1.69005 1.47909 0.88390 0.88308 0.87150 0.90029 0.90487 0.92929 0.92931 0.91261 0.90282 0.91133 0.91547 0.90851 0.89499 0.89348 0.89680 0.90215 0.88229 0.95298 0.93373 0.95541 0.91897 0.89885 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 14.32 29.01 0.42 -0.99 16 2 C -0.15 -1.22 9.52 -36.03 -0.34 -1.56 16 3 C -0.09 -0.86 6.03 -27.88 -0.17 -1.03 16 4 C 0.06 0.65 5.73 37.16 0.21 0.86 16 5 O -0.36 -5.02 9.55 -54.87 -0.52 -5.54 16 6 C 0.08 1.00 2.54 -27.88 -0.07 0.93 16 7 H 0.09 1.00 7.53 -51.93 -0.39 0.61 16 8 C -0.17 -1.89 9.37 37.16 0.35 -1.54 16 9 C 0.53 8.80 7.18 -10.99 -0.08 8.72 16 10 O -0.53 -10.65 16.84 -14.09 -0.24 -10.88 16 11 N -0.61 -9.68 3.33 -170.53 -0.57 -10.25 16 12 C 0.11 1.76 6.90 -2.31 -0.02 1.75 16 13 C -0.14 -2.42 5.93 -24.74 -0.15 -2.57 16 14 C 0.08 1.50 0.83 -89.73 -0.07 1.43 16 15 C 0.11 1.71 5.38 -3.32 -0.02 1.69 16 16 C 0.16 3.56 3.89 -3.85 -0.01 3.54 16 17 N -0.59 -13.70 2.94 -172.18 -0.51 -14.21 16 18 C -0.25 -6.43 9.66 -15.06 -0.15 -6.58 16 19 H 0.07 1.67 7.85 -52.49 -0.41 1.25 16 20 C 0.01 0.14 5.11 -17.43 -0.09 0.05 16 21 N -0.91 -24.49 10.95 55.49 0.61 -23.88 16 22 Si 0.91 20.63 29.56 -169.99 -5.03 15.60 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.11 2.13 6.71 -3.54 -0.02 2.10 16 27 C 0.05 0.76 6.76 37.31 0.25 1.01 16 28 O -0.38 -6.73 10.22 -35.23 -0.36 -7.09 16 29 H 0.10 0.72 7.84 -52.48 -0.41 0.31 16 30 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.11 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.77 7.79 -51.93 -0.40 0.37 16 34 H 0.05 0.53 8.09 -51.93 -0.42 0.11 16 35 H 0.05 0.45 7.76 -51.93 -0.40 0.05 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.82 5.61 -51.93 -0.29 0.53 16 38 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.07 1.16 8.09 -51.93 -0.42 0.74 16 41 H 0.09 1.57 7.86 -51.92 -0.41 1.16 16 42 H 0.09 1.48 5.98 -51.93 -0.31 1.17 16 43 H 0.09 1.24 7.61 -51.93 -0.39 0.84 16 44 H 0.08 1.12 6.05 -51.93 -0.31 0.81 16 45 H 0.10 2.40 6.00 -51.93 -0.31 2.09 16 46 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 47 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 50 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.05 0.79 6.14 -51.93 -0.32 0.47 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -30.73 399.74 -9.09 -39.82 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -8.54 Total: 2.59 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 0.04 Total: 7.81 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.47 Total: -48.34 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -1.12 Total: -23.51 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.73 -9.09 -39.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675418282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.014 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds