Wall clock time and date at job start Tue Mar 31 2020 21:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00479 * 2 1 4 4 C 1.53002 * 109.47040 * 125.27867 * 3 2 1 5 5 O 1.42896 * 109.46904 * 180.02562 * 4 3 2 6 6 C 1.42899 * 113.99950 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.46912 * 329.99897 * 6 5 4 8 8 C 1.53006 * 109.47063 * 89.99651 * 6 5 4 9 9 C 1.50698 * 109.47407 * 209.99477 * 6 5 4 10 10 O 1.21281 * 119.99823 * 348.50601 * 9 6 5 11 11 N 1.34772 * 120.00351 * 168.50068 * 9 6 5 12 12 C 1.47488 * 125.66535 * 184.73782 * 11 9 6 13 13 C 1.55252 * 104.78315 * 155.91424 * 12 11 9 14 14 C 1.54519 * 101.43151 * 36.67461 * 13 12 11 15 15 C 1.47189 * 125.65885 * 5.04048 * 11 9 6 16 16 C 1.52508 * 110.06000 * 206.74196 * 14 13 12 17 17 N 1.47308 * 108.40970 * 287.84848 * 16 14 13 18 18 C 1.36943 * 121.05830 * 130.61151 * 17 16 14 19 19 H 1.08002 * 119.99829 * 209.42875 * 18 17 16 20 20 C 1.38810 * 120.00377 * 29.42285 * 18 17 16 21 21 N 1.31620 * 119.99659 * 9.33834 * 20 18 17 22 22 Si 1.86790 * 120.00206 * 189.33499 * 20 18 17 23 23 H 1.48504 * 109.47424 * 60.00114 * 22 20 18 24 24 H 1.48499 * 109.47096 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47263 * 300.00274 * 22 20 18 26 26 C 1.47156 * 117.87916 * 310.63516 * 17 16 14 27 27 C 1.53286 * 108.53942 * 51.13280 * 26 17 16 28 28 O 1.42063 * 110.33392 * 83.74910 * 14 13 12 29 29 H 1.08004 * 119.99486 * 359.71987 * 1 2 3 30 30 H 1.07994 * 120.00706 * 179.72561 * 1 2 3 31 31 H 1.08004 * 119.99486 * 180.28012 * 2 1 3 32 32 H 1.08997 * 109.46753 * 245.27755 * 3 2 1 33 33 H 1.09000 * 109.47102 * 5.27905 * 3 2 1 34 34 H 1.09000 * 109.46987 * 300.00305 * 4 3 2 35 35 H 1.09000 * 109.47142 * 60.00062 * 4 3 2 36 36 H 1.09002 * 109.47180 * 66.79571 * 8 6 5 37 37 H 1.08998 * 109.46789 * 186.79148 * 8 6 5 38 38 H 1.08995 * 109.47030 * 306.79006 * 8 6 5 39 39 H 1.08993 * 110.35174 * 274.86733 * 12 11 9 40 40 H 1.08997 * 110.35079 * 37.15292 * 12 11 9 41 41 H 1.09008 * 111.21497 * 278.58590 * 13 12 11 42 42 H 1.08996 * 110.90645 * 154.63933 * 13 12 11 43 43 H 1.08993 * 109.91241 * 300.84104 * 15 11 9 44 44 H 1.09001 * 109.91036 * 61.92871 * 15 11 9 45 45 H 1.08996 * 109.68276 * 47.58124 * 16 14 13 46 46 H 1.08996 * 109.67602 * 168.12679 * 16 14 13 47 47 H 0.97003 * 120.00197 * 179.97438 * 21 20 18 48 48 H 1.08996 * 109.62243 * 291.42247 * 26 17 16 49 49 H 1.09001 * 109.78430 * 170.94118 * 26 17 16 50 50 H 1.08997 * 109.51371 * 187.15925 * 27 26 17 51 51 H 1.08998 * 109.51251 * 67.01018 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0401 1.3300 1.1776 5 8 3.7543 2.5677 1.1779 6 6 4.6982 2.6938 2.2433 7 1 4.3499 2.1265 3.1064 8 6 6.0548 2.1506 1.7897 9 6 4.8393 4.1461 2.6203 10 8 4.3635 5.0060 1.9096 11 7 5.4940 4.4893 3.7472 12 6 5.6210 5.8565 4.2854 13 6 5.8754 5.6622 5.8046 14 6 6.7613 4.3962 5.8073 15 6 6.2063 3.5625 4.6418 16 6 6.5997 3.6474 7.1260 17 7 7.2746 4.4183 8.1844 18 6 6.6407 4.7032 9.3644 19 1 6.8918 5.6014 9.9092 20 6 5.6753 3.8378 9.8604 21 7 5.4979 2.6597 9.3009 22 14 4.6283 4.3450 11.3217 23 1 3.8676 5.5746 10.9827 24 1 3.6801 3.2517 11.6545 25 1 5.5052 4.6119 12.4901 26 6 8.6514 4.8729 7.9331 27 6 8.6876 5.5934 6.5806 28 8 8.1197 4.7438 5.5790 29 1 -0.5399 0.9354 0.0046 30 1 -0.5401 -0.9352 -0.0045 31 1 1.8499 -0.9354 -0.0046 32 1 2.6175 1.4047 -0.9335 33 1 1.3591 2.1314 0.0946 34 1 2.4862 1.2302 2.1111 35 1 3.7446 0.5037 1.0831 36 1 6.4591 2.7913 1.0060 37 1 6.7412 2.1348 2.6363 38 1 5.9304 1.1389 1.4039 39 1 6.4622 6.3704 3.8203 40 1 4.6987 6.4146 4.1242 41 1 4.9430 5.4878 6.3416 42 1 6.4111 6.5151 6.2215 43 1 5.5165 2.8084 5.0206 44 1 7.0232 3.0815 4.1039 45 1 5.5407 3.5469 7.3637 46 1 7.0536 2.6598 7.0453 47 1 4.8235 2.0547 9.6476 48 1 9.3218 4.0138 7.9083 49 1 8.9634 5.5581 8.7213 50 1 9.7200 5.8250 6.3190 51 1 8.1115 6.5165 6.6443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001675418282.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:38 Heat of formation + Delta-G solvation = -88.621739 kcal Electronic energy + Delta-G solvation = -30832.109698 eV Core-core repulsion = 26732.615990 eV Total energy + Delta-G solvation = -4099.493707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73583 -40.45198 -38.91933 -37.46271 -36.22861 -36.00875 -33.43114 -33.19503 -32.30825 -30.80308 -29.85521 -29.04569 -27.41165 -25.96182 -25.00024 -24.05845 -23.27411 -23.04693 -20.92671 -20.43354 -20.30948 -18.97860 -18.46664 -17.79146 -17.52614 -17.16524 -16.95298 -16.43045 -16.25508 -16.04903 -15.77246 -15.56613 -15.35323 -15.14985 -14.74610 -14.67850 -14.51287 -14.23488 -14.07579 -13.72730 -13.59694 -13.46338 -13.24398 -13.02855 -12.85482 -12.75333 -12.65207 -12.51557 -12.47825 -12.35203 -12.15673 -12.06485 -11.97329 -11.82544 -11.79118 -11.14907 -11.05454 -10.72612 -10.56094 -10.45026 -10.26947 -9.78660 -8.63464 -7.87132 -5.37155 1.31313 1.44242 1.48528 1.49736 1.55636 1.63500 2.48787 2.68940 2.80566 3.25197 3.32283 3.41645 3.72076 3.81850 3.87937 3.93681 3.98128 4.01057 4.14422 4.21507 4.26002 4.30889 4.36870 4.42477 4.43573 4.47445 4.53909 4.64553 4.67928 4.72030 4.74355 4.83174 4.89191 4.91822 5.01157 5.03129 5.07433 5.10997 5.12769 5.14413 5.20360 5.30553 5.58345 5.64299 5.72230 5.85099 6.05757 6.34057 6.36456 6.42194 6.99875 7.12003 7.78476 8.33334 9.17999 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002921 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.101600 B = 9581.954031 C =10991.075521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.159 4.159 3 C -0.091 4.091 4 C 0.058 3.942 5 O -0.385 6.385 6 C 0.077 3.923 7 H 0.103 0.897 8 C -0.166 4.166 9 C 0.527 3.473 10 O -0.571 6.571 11 N -0.610 5.610 12 C 0.116 3.884 13 C -0.135 4.135 14 C 0.091 3.909 15 C 0.118 3.882 16 C 0.175 3.825 17 N -0.610 5.610 18 C -0.258 4.258 19 H 0.069 0.931 20 C -0.044 4.044 21 N -0.933 5.933 22 Si 0.964 3.036 23 H -0.279 1.279 24 H -0.295 1.295 25 H -0.278 1.278 26 C 0.104 3.896 27 C 0.052 3.948 28 O -0.379 6.379 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.006 0.994 47 H 0.251 0.749 48 H 0.019 0.981 49 H 0.070 0.930 50 H 0.119 0.881 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -3.618 -14.655 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.177 4.177 3 C -0.128 4.128 4 C -0.018 4.018 5 O -0.304 6.304 6 C 0.016 3.984 7 H 0.121 0.879 8 C -0.223 4.223 9 C 0.316 3.684 10 O -0.450 6.450 11 N -0.345 5.345 12 C -0.006 4.006 13 C -0.173 4.173 14 C 0.050 3.950 15 C -0.005 4.005 16 C 0.049 3.951 17 N -0.334 5.334 18 C -0.388 4.388 19 H 0.086 0.914 20 C -0.239 4.239 21 N -0.579 5.579 22 Si 0.792 3.208 23 H -0.205 1.205 24 H -0.221 1.221 25 H -0.204 1.204 26 C -0.021 4.021 27 C -0.026 4.026 28 O -0.298 6.298 29 H 0.112 0.888 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.090 0.910 46 H 0.024 0.976 47 H 0.060 0.940 48 H 0.037 0.963 49 H 0.089 0.911 50 H 0.137 0.863 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.325 -3.226 -15.333 15.724 hybrid contribution -0.710 0.082 1.556 1.712 sum -2.036 -3.144 -13.777 14.277 Atomic orbital electron populations 1.24082 0.96001 1.02680 0.99918 1.22852 0.96165 0.97792 1.00923 1.20620 0.97588 0.96368 0.98218 1.22752 0.94299 0.85710 0.99013 1.87975 1.54560 1.39266 1.48629 1.21902 0.92720 0.91568 0.92162 0.87937 1.22256 0.94161 1.02837 1.03086 1.20622 0.76961 0.91753 0.79048 1.90666 1.49907 1.53007 1.51421 1.48544 1.52566 1.09841 1.23525 1.22273 1.01691 0.83595 0.93053 1.23107 1.00518 0.99350 0.94362 1.22404 0.82697 0.94779 0.95151 1.22044 0.96664 0.91984 0.89795 1.20977 0.98560 0.91154 0.84428 1.44249 1.10425 1.64262 1.14503 1.19405 1.17757 1.02771 0.98889 0.91378 1.25786 1.02531 0.95011 1.00601 1.70068 1.35956 1.08038 1.43794 0.85404 0.78491 0.76920 0.79970 1.20490 1.22134 1.20410 1.21770 0.86326 0.97194 0.96809 1.23173 0.99207 0.92345 0.87845 1.87661 1.24801 1.69252 1.48060 0.88783 0.86804 0.85569 0.90005 0.91928 0.92898 0.90700 0.92287 0.89573 0.88750 0.90745 0.91041 0.91225 0.89081 0.88998 0.88296 0.91017 0.97643 0.93987 0.96254 0.91150 0.86334 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.61 14.32 67.78 0.97 -1.64 16 2 C -0.16 -2.28 9.52 25.64 0.24 -2.04 16 3 C -0.09 -1.62 6.03 29.85 0.18 -1.44 16 4 C 0.06 1.13 5.73 71.98 0.41 1.54 16 5 O -0.39 -10.43 9.55 -130.20 -1.24 -11.67 16 6 C 0.08 1.93 2.54 29.85 0.08 2.01 16 7 H 0.10 2.19 7.53 -2.39 -0.02 2.18 16 8 C -0.17 -3.25 9.37 71.98 0.67 -2.57 16 9 C 0.53 17.08 7.18 87.66 0.63 17.71 16 10 O -0.57 -23.09 16.84 15.75 0.27 -22.82 16 11 N -0.61 -18.67 3.33 -811.84 -2.70 -21.37 16 12 C 0.12 3.56 6.90 86.96 0.60 4.16 16 13 C -0.14 -4.47 5.93 31.88 0.19 -4.28 16 14 C 0.09 3.15 0.83 -10.22 -0.01 3.14 16 15 C 0.12 3.42 5.38 86.47 0.46 3.89 16 16 C 0.18 7.65 3.89 86.06 0.33 7.99 16 17 N -0.61 -28.17 2.94 -698.67 -2.05 -30.22 16 18 C -0.26 -13.17 9.66 84.03 0.81 -12.36 16 19 H 0.07 3.38 7.85 -2.91 -0.02 3.36 16 20 C -0.04 -2.28 5.11 84.86 0.43 -1.84 16 21 N -0.93 -51.30 10.95 21.65 0.24 -51.07 16 22 Si 0.96 42.63 29.56 68.60 2.03 44.66 16 23 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 26 C 0.10 3.94 6.71 86.35 0.58 4.52 16 27 C 0.05 1.57 6.76 72.08 0.49 2.06 16 28 O -0.38 -12.68 10.22 -148.97 -1.52 -14.20 16 29 H 0.09 1.33 7.84 -2.91 -0.02 1.31 16 30 H 0.11 1.20 8.06 -2.91 -0.02 1.18 16 31 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.06 1.27 7.79 -2.39 -0.02 1.25 16 34 H 0.05 1.01 8.09 -2.39 -0.02 0.99 16 35 H 0.07 1.10 7.76 -2.39 -0.02 1.09 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.55 5.61 -2.39 -0.01 1.53 16 38 H 0.09 1.40 7.76 -2.39 -0.02 1.38 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 2.23 8.09 -2.39 -0.02 2.21 16 41 H 0.07 2.55 7.86 -2.38 -0.02 2.53 16 42 H 0.09 2.95 5.98 -2.39 -0.01 2.94 16 43 H 0.09 2.57 7.61 -2.39 -0.02 2.55 16 44 H 0.10 2.54 6.05 -2.39 -0.01 2.53 16 45 H 0.07 3.54 6.00 -2.39 -0.01 3.53 16 46 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 47 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.07 2.51 7.97 -2.39 -0.02 2.49 16 50 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.05 1.62 6.14 -2.39 -0.01 1.61 16 Total: -1.00 -66.61 399.74 2.99 -63.62 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.90 Total: 22.23 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 7.08 Total: 20.84 kcal Atomic # 7 Polarization: -98.14 SS G_CDS: -4.52 Total: -102.66 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -2.50 Total: -48.69 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -66.61 2.99 -63.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675418282.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.002 kcal (2) G-P(sol) polarization free energy of solvation -66.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds