Wall clock time and date at job start Tue Mar 31 2020 21:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00328 * 2 1 4 4 C 1.52988 * 109.47489 * 124.99704 * 3 2 1 5 5 O 1.42901 * 109.47530 * 180.02562 * 4 3 2 6 6 C 1.42892 * 114.00423 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47440 * 29.99550 * 6 5 4 8 8 C 1.53003 * 109.47246 * 269.99981 * 6 5 4 9 9 C 1.50705 * 109.47402 * 149.99711 * 6 5 4 10 10 O 1.21280 * 119.99887 * 11.69021 * 9 6 5 11 11 N 1.34778 * 120.00186 * 191.68633 * 9 6 5 12 12 C 1.47089 * 125.62836 * 355.25930 * 11 9 6 13 13 C 1.54456 * 107.29429 * 179.02040 * 12 11 9 14 14 C 1.54379 * 103.03489 * 338.40833 * 13 12 11 15 15 C 1.47578 * 125.62992 * 175.25407 * 11 9 6 16 16 C 1.52364 * 110.37152 * 152.50927 * 14 13 12 17 17 N 1.47332 * 108.39991 * 73.34717 * 16 14 13 18 18 C 1.36929 * 121.07818 * 229.16525 * 17 16 14 19 19 H 1.08003 * 120.00085 * 148.96004 * 18 17 16 20 20 C 1.38814 * 120.00120 * 328.96047 * 18 17 16 21 21 N 1.31620 * 119.99983 * 344.29636 * 20 18 17 22 22 Si 1.86803 * 120.00250 * 164.29161 * 20 18 17 23 23 H 1.48505 * 109.46978 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47252 * 120.00111 * 22 20 18 25 25 H 1.48497 * 109.47066 * 240.00612 * 22 20 18 26 26 C 1.47168 * 117.84138 * 49.18870 * 17 16 14 27 27 C 1.53272 * 108.57733 * 308.78762 * 26 17 16 28 28 O 1.41881 * 110.71239 * 276.38751 * 14 13 12 29 29 H 1.08001 * 120.00598 * 180.02562 * 1 2 3 30 30 H 1.08003 * 119.99710 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99710 * 179.97438 * 2 1 3 32 32 H 1.09006 * 109.47130 * 4.99625 * 3 2 1 33 33 H 1.09007 * 109.46947 * 244.99944 * 3 2 1 34 34 H 1.08999 * 109.47334 * 60.00006 * 4 3 2 35 35 H 1.09007 * 109.47222 * 300.00072 * 4 3 2 36 36 H 1.08996 * 109.47148 * 53.43250 * 8 6 5 37 37 H 1.08998 * 109.47785 * 173.43647 * 8 6 5 38 38 H 1.09005 * 109.46509 * 293.43389 * 8 6 5 39 39 H 1.09000 * 109.88265 * 59.59639 * 12 11 9 40 40 H 1.09005 * 109.88029 * 298.44569 * 12 11 9 41 41 H 1.09005 * 110.73187 * 96.84712 * 13 12 11 42 42 H 1.09001 * 110.73386 * 219.97590 * 13 12 11 43 43 H 1.08992 * 110.37270 * 322.13209 * 15 11 9 44 44 H 1.09001 * 110.36893 * 84.36674 * 15 11 9 45 45 H 1.09003 * 109.67422 * 193.07225 * 16 14 13 46 46 H 1.08997 * 109.67860 * 313.57802 * 16 14 13 47 47 H 0.96998 * 120.00265 * 180.02562 * 21 20 18 48 48 H 1.08996 * 109.62670 * 68.51638 * 26 17 16 49 49 H 1.08998 * 109.61705 * 188.88106 * 26 17 16 50 50 H 1.08996 * 109.51607 * 172.90513 * 27 26 17 51 51 H 1.09009 * 109.51382 * 293.05220 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 8 3.7491 2.5709 1.1819 6 6 4.6885 2.6997 2.2509 7 1 5.0655 1.7141 2.5241 8 6 4.0006 3.3358 3.4605 9 6 5.8357 3.5716 1.8094 10 8 5.7533 4.2065 0.7793 11 7 6.9532 3.6458 2.5591 12 6 7.1482 3.0110 3.8716 13 6 8.5821 3.3482 4.3362 14 6 9.3036 3.6944 3.0160 15 6 8.1832 4.3774 2.1988 16 6 10.4497 4.6639 3.2764 17 7 11.5440 3.9254 3.9306 18 6 12.1431 4.4069 5.0638 19 1 12.5415 3.7212 5.7971 20 6 12.2385 5.7763 5.2703 21 7 12.0450 6.6079 4.2686 22 14 12.6412 6.4389 6.9698 23 1 12.8118 5.3063 7.9150 24 1 13.8990 7.2259 6.9090 25 1 11.5336 7.3110 7.4364 26 6 11.9725 2.6538 3.3263 27 6 10.7353 1.7763 3.1064 28 8 9.7574 2.5164 2.3684 29 1 -0.5401 -0.9353 0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6214 1.4025 -0.9314 34 1 3.7399 0.5066 1.0921 35 1 2.4772 1.2357 2.1130 36 1 3.1031 2.7688 3.7078 37 1 4.6815 3.3277 4.3117 38 1 3.7271 4.3640 3.2237 39 1 7.0321 1.9309 3.7818 40 1 6.4249 3.4054 4.5853 41 1 8.5779 4.2050 5.0100 42 1 9.0457 2.4853 4.8145 43 1 8.3816 4.2834 1.1313 44 1 8.0951 5.4277 2.4768 45 1 10.8007 5.0794 2.3318 46 1 10.1088 5.4689 3.9274 47 1 12.1120 7.5648 4.4128 48 1 12.4580 2.8482 2.3700 49 1 12.6694 2.1477 3.9943 50 1 11.0162 0.8846 2.5460 51 1 10.3194 1.4848 4.0710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001675418284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:45 Heat of formation + Delta-G solvation = -71.699207 kcal Electronic energy + Delta-G solvation = -30642.139577 eV Core-core repulsion = 26543.379686 eV Total energy + Delta-G solvation = -4098.759891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.40308 -39.16209 -37.84403 -36.08981 -35.35743 -34.47449 -32.38808 -31.34749 -30.92821 -29.59113 -29.24283 -27.46797 -25.97593 -24.47081 -23.53983 -23.12316 -22.38545 -21.36196 -20.22560 -19.41506 -18.76748 -17.41154 -17.14065 -16.82806 -16.19084 -15.86149 -15.57628 -15.22875 -15.10862 -14.92567 -14.42603 -14.31027 -14.01235 -13.89929 -13.48543 -13.37551 -13.14943 -12.97281 -12.77478 -12.67469 -12.61560 -12.30270 -12.15550 -12.10924 -11.47555 -11.43113 -11.37512 -11.36606 -11.11495 -10.93838 -10.89069 -10.76329 -10.33392 -10.31809 -10.07965 -10.05181 -9.72367 -9.57164 -9.46850 -9.06649 -8.60422 -8.46392 -6.74094 -5.90615 -3.38062 1.85874 2.68065 2.76428 3.28789 3.37438 3.38986 3.67879 4.12905 4.36875 4.44547 4.58409 4.69325 4.72345 4.82070 4.84202 4.90809 4.99188 5.02942 5.09658 5.15365 5.28859 5.36216 5.40332 5.46571 5.47872 5.53110 5.62631 5.64515 5.73642 5.76511 5.82810 5.92171 5.95111 6.03093 6.11716 6.21735 6.24446 6.27115 6.36736 6.38937 6.46079 6.59586 6.76376 6.90862 6.96924 7.34920 7.63450 7.68444 7.87390 8.27710 8.29618 9.04834 9.67024 10.27856 11.17655 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022738 B = 0.002363 C = 0.002287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.126411 B =11846.098190 C =12239.024557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.152 4.152 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.358 6.358 6 C 0.078 3.922 7 H 0.083 0.917 8 C -0.173 4.173 9 C 0.530 3.470 10 O -0.524 6.524 11 N -0.610 5.610 12 C 0.099 3.901 13 C -0.144 4.144 14 C 0.086 3.914 15 C 0.126 3.874 16 C 0.167 3.833 17 N -0.590 5.590 18 C -0.258 4.258 19 H 0.067 0.933 20 C 0.008 3.992 21 N -0.899 5.899 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.289 1.289 25 H -0.288 1.288 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.373 6.373 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.033 0.967 46 H 0.088 0.912 47 H 0.256 0.744 48 H 0.026 0.974 49 H 0.063 0.937 50 H 0.082 0.918 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.705 -12.538 -1.480 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.170 4.170 3 C -0.131 4.131 4 C -0.013 4.013 5 O -0.276 6.276 6 C 0.017 3.983 7 H 0.101 0.899 8 C -0.230 4.230 9 C 0.317 3.683 10 O -0.399 6.399 11 N -0.346 5.346 12 C -0.024 4.024 13 C -0.182 4.182 14 C 0.044 3.956 15 C 0.004 3.996 16 C 0.040 3.960 17 N -0.314 5.314 18 C -0.387 4.387 19 H 0.084 0.916 20 C -0.192 4.192 21 N -0.542 5.542 22 Si 0.731 3.269 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.214 1.214 26 C -0.018 4.018 27 C -0.031 4.031 28 O -0.292 6.292 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.128 0.872 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.051 0.949 46 H 0.106 0.894 47 H 0.066 0.934 48 H 0.044 0.956 49 H 0.081 0.919 50 H 0.100 0.900 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.902 -11.924 -2.396 21.643 hybrid contribution 0.463 0.171 1.365 1.451 sum -17.439 -11.754 -1.031 21.055 Atomic orbital electron populations 1.23900 0.95872 1.02034 1.00816 1.22820 0.96016 0.98044 1.00167 1.20643 0.97897 0.95829 0.98690 1.22531 0.94125 0.86227 0.98393 1.88021 1.53753 1.37100 1.48757 1.21805 0.89198 0.98978 0.88344 0.89927 1.22282 1.01389 1.02613 0.96759 1.19902 0.82125 0.82693 0.83606 1.90713 1.80353 1.44573 1.24279 1.48468 1.13881 1.51985 1.20253 1.22241 0.98676 0.97373 0.84066 1.23038 0.92631 1.03750 0.98820 1.22777 0.94507 0.87915 0.90391 1.22193 0.81096 0.95398 1.00940 1.21028 0.85275 0.91986 0.97702 1.44000 1.36890 1.21274 1.29249 1.19132 1.34402 0.89982 0.95179 0.91564 1.25170 0.99764 0.96851 0.97383 1.70022 1.52817 1.02263 1.29062 0.86244 0.77756 0.78843 0.84034 1.20167 1.21587 1.21429 1.21606 0.94178 0.88804 0.97186 1.23102 0.90253 0.94118 0.95673 1.87656 1.58735 1.37195 1.45654 0.88323 0.88411 0.87155 0.90505 0.89826 0.93052 0.93067 0.91242 0.90513 0.91091 0.91798 0.91365 0.89332 0.89468 0.89780 0.89611 0.94943 0.89359 0.93427 0.95567 0.91886 0.89981 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 14.32 29.02 0.42 -0.80 16 2 C -0.15 -1.08 9.52 -36.03 -0.34 -1.43 16 3 C -0.09 -0.81 6.03 -27.89 -0.17 -0.98 16 4 C 0.06 0.61 5.73 37.15 0.21 0.82 16 5 O -0.36 -4.79 9.55 -54.86 -0.52 -5.32 16 6 C 0.08 0.96 2.54 -27.88 -0.07 0.89 16 7 H 0.08 0.85 7.53 -51.93 -0.39 0.46 16 8 C -0.17 -1.69 9.37 37.16 0.35 -1.35 16 9 C 0.53 8.64 7.17 -10.98 -0.08 8.56 16 10 O -0.52 -10.71 16.85 -14.08 -0.24 -10.95 16 11 N -0.61 -9.48 3.33 -170.46 -0.57 -10.05 16 12 C 0.10 1.27 6.04 -2.96 -0.02 1.26 16 13 C -0.14 -2.25 5.85 -25.24 -0.15 -2.40 16 14 C 0.09 1.57 0.85 -89.39 -0.08 1.50 16 15 C 0.13 2.20 6.09 -2.62 -0.02 2.19 16 16 C 0.17 3.73 4.05 -3.91 -0.02 3.72 16 17 N -0.59 -13.90 2.95 -172.25 -0.51 -14.41 16 18 C -0.26 -6.63 9.61 -15.06 -0.14 -6.77 16 19 H 0.07 1.68 7.88 -52.48 -0.41 1.26 16 20 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 21 N -0.90 -25.01 11.47 55.49 0.64 -24.38 16 22 Si 0.90 20.63 29.58 -169.99 -5.03 15.60 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 26 C 0.11 2.17 6.71 -3.54 -0.02 2.15 16 27 C 0.05 0.78 6.78 37.30 0.25 1.03 16 28 O -0.37 -6.97 10.29 -35.22 -0.36 -7.34 16 29 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 30 H 0.10 0.59 7.84 -52.48 -0.41 0.18 16 31 H 0.11 0.68 8.06 -52.48 -0.42 0.26 16 32 H 0.08 0.67 7.79 -51.93 -0.40 0.27 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.44 8.08 -51.93 -0.42 0.03 16 35 H 0.05 0.41 7.76 -51.93 -0.40 0.01 16 36 H 0.07 0.55 7.76 -51.93 -0.40 0.15 16 37 H 0.08 0.66 5.62 -51.93 -0.29 0.37 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.73 7.96 -51.93 -0.41 0.32 16 40 H 0.07 0.73 6.09 -51.93 -0.32 0.41 16 41 H 0.09 1.44 7.83 -51.93 -0.41 1.04 16 42 H 0.09 1.35 6.07 -51.93 -0.32 1.03 16 43 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 44 H 0.09 1.48 8.01 -51.93 -0.42 1.07 16 45 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.09 2.15 6.34 -51.93 -0.33 1.82 16 47 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 50 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 51 H 0.05 0.75 6.22 -51.92 -0.32 0.43 16 LS Contribution 400.93 15.07 6.04 6.04 Total: -1.00 -31.84 400.93 -9.10 -40.94 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.59 Total: 1.34 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 0.04 Total: 8.52 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: -0.44 Total: -48.83 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -1.12 Total: -23.61 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.03 Total: 15.60 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.84 -9.10 -40.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001675418284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.764 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds