Wall clock time and date at job start Tue Mar 31 2020 21:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46961 * 2 1 4 4 O 1.42901 * 109.47210 * 120.00198 * 2 1 3 5 5 C 1.42903 * 113.99594 * 269.99908 * 4 2 1 6 6 C 1.53001 * 109.46813 * 179.97438 * 5 4 2 7 7 C 1.52993 * 117.50100 * 243.74514 * 6 5 4 8 8 C 1.53000 * 117.49765 * 175.08593 * 6 5 4 9 9 C 1.50697 * 109.46885 * 240.00235 * 2 1 3 10 10 O 1.21280 * 120.00080 * 244.99461 * 9 2 1 11 11 N 1.34776 * 120.00086 * 65.00037 * 9 2 1 12 12 C 1.46505 * 119.99875 * 179.97438 * 11 9 2 13 13 C 1.53000 * 109.47303 * 179.97438 * 12 11 9 14 14 H 1.09003 * 110.34149 * 304.33953 * 13 12 11 15 15 C 1.55009 * 110.30252 * 182.21367 * 13 12 11 16 16 C 1.55495 * 101.04255 * 205.04810 * 15 13 12 17 17 C 1.53653 * 101.96737 * 33.48687 * 16 15 13 18 18 C 1.52705 * 115.26457 * 206.90205 * 17 16 15 19 19 N 1.47218 * 87.79329 * 219.25456 * 18 17 16 20 20 C 1.36939 * 135.97234 * 206.43293 * 19 18 17 21 21 H 1.07997 * 119.99736 * 7.55209 * 20 19 18 22 22 C 1.38805 * 119.99984 * 187.55519 * 20 19 18 23 23 N 1.31621 * 120.00084 * 174.47539 * 22 20 19 24 24 Si 1.86808 * 119.99965 * 354.46939 * 22 20 19 25 25 H 1.48504 * 109.46986 * 174.94918 * 24 22 20 26 26 H 1.48489 * 109.47489 * 294.94991 * 24 22 20 27 27 H 1.48498 * 109.46982 * 54.95577 * 24 22 20 28 28 C 1.47208 * 88.05526 * 26.69108 * 19 18 17 29 29 O 1.42390 * 108.53608 * 339.12888 * 17 16 15 30 30 H 1.09000 * 109.47440 * 59.99952 * 1 2 3 31 31 H 1.08997 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47188 * 299.99678 * 1 2 3 33 33 H 1.08999 * 109.47204 * 299.99586 * 5 4 2 34 34 H 1.08995 * 109.47299 * 60.00362 * 5 4 2 35 35 H 1.09007 * 115.55030 * 29.42177 * 6 5 4 36 36 H 1.08996 * 117.50029 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.49798 * 145.01738 * 7 6 5 38 38 H 1.09007 * 117.49546 * 214.97922 * 8 6 5 39 39 H 1.09002 * 117.50200 * 359.97438 * 8 6 5 40 40 H 0.96994 * 120.00056 * 359.97438 * 11 9 2 41 41 H 1.09006 * 109.47198 * 59.99799 * 12 11 9 42 42 H 1.08995 * 109.47030 * 300.00130 * 12 11 9 43 43 H 1.08998 * 111.10756 * 322.98868 * 15 13 12 44 44 H 1.08996 * 111.11001 * 87.06073 * 15 13 12 45 45 H 1.09000 * 110.92952 * 275.31760 * 16 15 13 46 46 H 1.09002 * 110.92876 * 151.65908 * 16 15 13 47 47 H 1.08993 * 113.50311 * 104.52450 * 18 17 16 48 48 H 1.09000 * 113.49511 * 333.98054 * 18 17 16 49 49 H 0.96996 * 119.99869 * 354.90609 * 23 22 20 50 50 H 1.09003 * 113.50359 * 88.04129 * 28 19 18 51 51 H 1.09000 * 113.50322 * 218.58165 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6408 3.4792 7 6 1.8107 -0.7277 4.7153 8 6 3.0878 0.1152 4.7539 9 6 2.0323 -0.7104 -1.2305 10 8 2.6530 -1.7466 -1.1216 11 7 1.7918 -0.1941 -2.4520 12 6 2.2806 -0.8844 -3.6482 13 6 1.8752 -0.0946 -4.8943 14 1 0.7960 0.0574 -4.9121 15 6 2.3349 -0.8373 -6.1749 16 6 2.4436 0.3433 -7.1810 17 6 2.8961 1.4963 -6.2717 18 6 2.5020 2.8933 -6.7458 19 7 3.8234 3.3579 -6.2925 20 6 4.3555 4.5437 -5.8613 21 1 3.7111 5.3921 -5.6842 22 6 5.7231 4.6553 -5.6519 23 7 6.2486 5.8219 -5.3431 24 14 6.8179 3.1497 -5.8083 25 1 8.2392 3.5535 -5.6592 26 1 6.4677 2.1707 -4.7482 27 1 6.6173 2.5283 -7.1420 28 6 4.3236 1.9910 -6.5121 29 8 2.5584 1.1715 -4.9271 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9320 0.9513 2.0450 34 1 1.2538 0.6546 2.5589 35 1 3.2968 -1.5212 3.2218 36 1 0.8584 -0.1983 4.6842 37 1 1.8094 -1.6652 5.2714 38 1 3.9263 -0.2681 5.3354 39 1 2.9764 1.1995 4.7482 40 1 1.2951 0.6345 -2.5391 41 1 1.8464 -1.8832 -3.6943 42 1 3.3669 -0.9622 -3.6043 43 1 3.3028 -1.3156 -6.0252 44 1 1.5876 -1.5618 -6.4982 45 1 1.4755 0.5604 -7.6326 46 1 3.1908 0.1348 -7.9467 47 1 1.6735 3.3252 -6.1845 48 1 2.3634 2.9632 -7.8246 49 1 5.6931 6.6169 -5.3342 50 1 4.6790 1.8160 -7.5276 51 1 5.0331 1.6606 -5.7534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717221464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:51 Heat of formation + Delta-G solvation = -34.850459 kcal Electronic energy + Delta-G solvation = -29815.463449 eV Core-core repulsion = 25718.301439 eV Total energy + Delta-G solvation = -4097.162009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.39640 -39.88910 -38.43788 -37.02638 -36.62181 -34.57795 -32.39083 -32.23717 -31.73703 -29.44265 -27.37283 -27.08853 -25.49820 -24.67920 -23.29606 -22.69717 -21.57705 -21.15713 -21.05616 -20.24707 -19.32556 -17.54698 -17.51580 -17.42968 -16.72909 -16.17209 -15.80051 -15.54267 -15.36305 -15.07344 -14.64696 -14.42804 -14.08688 -13.87934 -13.84709 -13.34278 -13.27650 -13.20537 -13.03677 -12.90132 -12.60861 -12.41631 -12.18787 -11.92738 -11.84092 -11.71546 -11.64076 -11.38250 -11.22555 -10.84097 -10.78334 -10.69056 -10.65952 -10.41367 -10.27976 -9.97270 -9.67442 -9.55254 -9.14411 -9.09253 -8.89891 -8.77981 -7.14132 -6.26180 -3.19311 2.55894 2.65995 3.39212 3.42858 3.48637 3.62915 3.67665 3.78571 4.42479 4.45681 4.54352 4.55665 4.63164 4.64864 4.68946 4.69988 4.77009 4.83600 4.87160 4.94761 4.97755 5.09719 5.13477 5.27736 5.30647 5.32578 5.35250 5.41548 5.44233 5.49687 5.55021 5.56052 5.70206 5.76603 5.77262 5.87848 5.89839 5.91875 6.05095 6.16955 6.22350 6.30882 6.32803 6.40743 6.48206 6.84624 7.13422 7.42532 7.44854 8.16094 8.26067 9.00529 9.52956 10.39025 11.24101 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.002731 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.452810 B =10251.934300 C =11907.232137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.070 3.930 3 H 0.089 0.911 4 O -0.354 6.354 5 C 0.089 3.911 6 C -0.152 4.152 7 C -0.178 4.178 8 C -0.174 4.174 9 C 0.515 3.485 10 O -0.524 6.524 11 N -0.720 5.720 12 C 0.125 3.875 13 C 0.063 3.937 14 H 0.077 0.923 15 C -0.146 4.146 16 C -0.137 4.137 17 C 0.070 3.930 18 C 0.117 3.883 19 N -0.621 5.621 20 C -0.298 4.298 21 H 0.082 0.918 22 C -0.025 4.025 23 N -0.936 5.936 24 Si 1.069 2.931 25 H -0.295 1.295 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.091 3.909 29 O -0.332 6.332 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.405 0.595 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.050 0.950 48 H 0.048 0.952 49 H 0.260 0.740 50 H 0.055 0.945 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.740 -15.285 9.827 23.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 H 0.107 0.893 4 O -0.272 6.272 5 C 0.013 3.987 6 C -0.170 4.170 7 C -0.215 4.215 8 C -0.211 4.211 9 C 0.300 3.700 10 O -0.399 6.399 11 N -0.374 5.374 12 C 0.001 3.999 13 C 0.004 3.996 14 H 0.094 0.906 15 C -0.184 4.184 16 C -0.176 4.176 17 C 0.029 3.971 18 C -0.010 4.010 19 N -0.349 5.349 20 C -0.424 4.424 21 H 0.100 0.900 22 C -0.224 4.224 23 N -0.579 5.579 24 Si 0.901 3.099 25 H -0.223 1.223 26 H -0.219 1.219 27 H -0.215 1.215 28 C -0.034 4.034 29 O -0.251 6.251 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.114 0.886 40 H 0.240 0.760 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.524 -16.386 10.372 23.085 hybrid contribution -1.913 1.260 -0.476 2.340 sum -14.437 -15.125 9.896 23.133 Atomic orbital electron populations 1.22222 0.93507 1.03715 1.03200 1.21871 0.95065 0.96577 0.85606 0.89299 1.88025 1.86534 1.33971 1.18677 1.22140 0.99153 0.92102 0.85315 1.22111 1.04054 1.02531 0.88275 1.23078 0.94936 1.02148 1.01311 1.22997 0.99258 0.98946 0.99858 1.20312 0.79874 0.85569 0.84224 1.90713 1.39355 1.23344 1.86452 1.45810 1.58180 1.28107 1.05290 1.21552 1.00846 0.95071 0.82405 1.23309 0.96866 0.85100 0.94295 0.90572 1.23224 1.02795 0.98150 0.94241 1.22909 1.02591 0.93821 0.98272 1.23187 0.97853 0.94234 0.81825 1.22637 0.91114 0.90257 0.96989 1.45853 1.07031 1.06079 1.75955 1.20114 0.92814 0.87284 1.42225 0.90020 1.25686 0.94172 1.03228 0.99272 1.70919 1.37648 0.98215 1.51088 0.83738 0.75681 0.74277 0.76161 1.22262 1.21943 1.21529 1.23121 0.94718 0.86515 0.99063 1.88438 1.76009 1.35392 1.25249 0.90824 0.91097 0.91231 0.92458 0.92961 0.86628 0.88717 0.88619 0.88316 0.88567 0.75996 0.90218 0.90490 0.89894 0.89849 0.90235 0.89616 0.93218 0.93466 0.93018 0.92760 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.07 0.79 3.13 -27.89 -0.09 0.70 16 3 H 0.09 0.87 7.79 -51.93 -0.40 0.47 16 4 O -0.35 -4.57 9.53 -55.09 -0.52 -5.10 16 5 C 0.09 0.89 6.03 37.16 0.22 1.11 16 6 C -0.15 -1.41 6.05 -90.62 -0.55 -1.96 16 7 C -0.18 -1.33 10.18 -26.70 -0.27 -1.60 16 8 C -0.17 -1.29 10.25 -26.70 -0.27 -1.56 16 9 C 0.52 7.22 7.18 -10.99 -0.08 7.15 16 10 O -0.52 -9.49 16.51 -14.30 -0.24 -9.73 16 11 N -0.72 -8.79 5.50 -60.29 -0.33 -9.12 16 12 C 0.12 1.53 5.38 -4.04 -0.02 1.51 16 13 C 0.06 0.74 3.49 -25.67 -0.09 0.65 16 14 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 15 C -0.15 -1.50 6.58 -24.34 -0.16 -1.66 16 16 C -0.14 -1.65 6.39 -25.07 -0.16 -1.81 16 17 C 0.07 1.21 1.75 -90.45 -0.16 1.05 16 18 C 0.12 2.29 8.20 -8.06 -0.07 2.22 16 19 N -0.62 -15.64 3.70 -184.58 -0.68 -16.32 16 20 C -0.30 -8.81 11.08 -15.06 -0.17 -8.98 16 21 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 22 C -0.03 -0.77 5.50 -17.43 -0.10 -0.86 16 23 N -0.94 -30.17 13.70 55.49 0.76 -29.41 16 24 Si 1.07 27.72 25.17 -169.99 -4.28 23.44 16 25 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 26 H -0.29 -7.35 6.49 56.52 0.37 -6.98 16 27 H -0.29 -6.86 6.18 56.52 0.35 -6.51 16 28 C 0.09 1.96 5.17 -7.92 -0.04 1.92 16 29 O -0.33 -5.70 10.84 -35.23 -0.38 -6.08 16 30 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.48 7.87 -51.93 -0.41 0.07 16 33 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 34 H 0.05 0.42 7.60 -51.93 -0.39 0.03 16 35 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 0.63 8.03 -51.93 -0.42 0.22 16 37 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 0.66 8.14 -51.92 -0.42 0.24 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.41 4.25 8.25 -40.82 -0.34 3.91 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 0.86 8.05 -51.93 -0.42 0.45 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.82 8.13 -51.93 -0.42 0.39 16 46 H 0.09 0.97 7.81 -51.93 -0.41 0.56 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 49 H 0.26 8.24 8.73 -40.82 -0.36 7.88 16 50 H 0.05 1.10 7.42 -51.93 -0.39 0.72 16 51 H 0.06 1.36 4.78 -51.93 -0.25 1.12 16 LS Contribution 408.65 15.07 6.16 6.16 Total: -1.00 -37.55 408.65 -10.14 -47.70 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -8.98 Total: 1.62 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.64 Total: -3.14 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.25 Total: -54.86 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -1.14 Total: -20.91 kcal Atomic # 14 Polarization: 27.72 SS G_CDS: -4.28 Total: 23.44 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.55 -10.14 -47.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717221464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.845 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds