Wall clock time and date at job start Tue Mar 31 2020 21:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46961 * 2 1 4 4 O 1.42901 * 109.47210 * 120.00198 * 2 1 3 5 5 C 1.42903 * 113.99594 * 269.99908 * 4 2 1 6 6 C 1.53001 * 109.46813 * 179.97438 * 5 4 2 7 7 C 1.52993 * 117.50100 * 243.74514 * 6 5 4 8 8 C 1.53000 * 117.49765 * 175.08593 * 6 5 4 9 9 C 1.50697 * 109.46885 * 240.00235 * 2 1 3 10 10 O 1.21280 * 120.00080 * 244.99461 * 9 2 1 11 11 N 1.34776 * 120.00086 * 65.00037 * 9 2 1 12 12 C 1.46505 * 119.99875 * 179.97438 * 11 9 2 13 13 C 1.53000 * 109.47303 * 179.97438 * 12 11 9 14 14 H 1.09003 * 110.34149 * 304.33953 * 13 12 11 15 15 C 1.55009 * 110.30252 * 182.21367 * 13 12 11 16 16 C 1.55495 * 101.04255 * 205.04810 * 15 13 12 17 17 C 1.53653 * 101.96737 * 33.48687 * 16 15 13 18 18 C 1.52705 * 115.26457 * 206.90205 * 17 16 15 19 19 N 1.47218 * 87.79329 * 219.25456 * 18 17 16 20 20 C 1.36939 * 135.97234 * 206.43293 * 19 18 17 21 21 H 1.07997 * 119.99736 * 7.55209 * 20 19 18 22 22 C 1.38805 * 119.99984 * 187.55519 * 20 19 18 23 23 N 1.31621 * 120.00084 * 174.47539 * 22 20 19 24 24 Si 1.86808 * 119.99965 * 354.46939 * 22 20 19 25 25 H 1.48504 * 109.46986 * 174.94918 * 24 22 20 26 26 H 1.48489 * 109.47489 * 294.94991 * 24 22 20 27 27 H 1.48498 * 109.46982 * 54.95577 * 24 22 20 28 28 C 1.47208 * 88.05526 * 26.69108 * 19 18 17 29 29 O 1.42390 * 108.53608 * 339.12888 * 17 16 15 30 30 H 1.09000 * 109.47440 * 59.99952 * 1 2 3 31 31 H 1.08997 * 109.47402 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47188 * 299.99678 * 1 2 3 33 33 H 1.08999 * 109.47204 * 299.99586 * 5 4 2 34 34 H 1.08995 * 109.47299 * 60.00362 * 5 4 2 35 35 H 1.09007 * 115.55030 * 29.42177 * 6 5 4 36 36 H 1.08996 * 117.50029 * 0.02562 * 7 6 5 37 37 H 1.09004 * 117.49798 * 145.01738 * 7 6 5 38 38 H 1.09007 * 117.49546 * 214.97922 * 8 6 5 39 39 H 1.09002 * 117.50200 * 359.97438 * 8 6 5 40 40 H 0.96994 * 120.00056 * 359.97438 * 11 9 2 41 41 H 1.09006 * 109.47198 * 59.99799 * 12 11 9 42 42 H 1.08995 * 109.47030 * 300.00130 * 12 11 9 43 43 H 1.08998 * 111.10756 * 322.98868 * 15 13 12 44 44 H 1.08996 * 111.11001 * 87.06073 * 15 13 12 45 45 H 1.09000 * 110.92952 * 275.31760 * 16 15 13 46 46 H 1.09002 * 110.92876 * 151.65908 * 16 15 13 47 47 H 1.08993 * 113.50311 * 104.52450 * 18 17 16 48 48 H 1.09000 * 113.49511 * 333.98054 * 18 17 16 49 49 H 0.96996 * 119.99869 * 354.90609 * 23 22 20 50 50 H 1.09003 * 113.50359 * 88.04129 * 28 19 18 51 51 H 1.09000 * 113.50322 * 218.58165 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6408 3.4792 7 6 1.8107 -0.7277 4.7153 8 6 3.0878 0.1152 4.7539 9 6 2.0323 -0.7104 -1.2305 10 8 2.6530 -1.7466 -1.1216 11 7 1.7918 -0.1941 -2.4520 12 6 2.2806 -0.8844 -3.6482 13 6 1.8752 -0.0946 -4.8943 14 1 0.7960 0.0574 -4.9121 15 6 2.3349 -0.8373 -6.1749 16 6 2.4436 0.3433 -7.1810 17 6 2.8961 1.4963 -6.2717 18 6 2.5020 2.8933 -6.7458 19 7 3.8234 3.3579 -6.2925 20 6 4.3555 4.5437 -5.8613 21 1 3.7111 5.3921 -5.6842 22 6 5.7231 4.6553 -5.6519 23 7 6.2486 5.8219 -5.3431 24 14 6.8179 3.1497 -5.8083 25 1 8.2392 3.5535 -5.6592 26 1 6.4677 2.1707 -4.7482 27 1 6.6173 2.5283 -7.1420 28 6 4.3236 1.9910 -6.5121 29 8 2.5584 1.1715 -4.9271 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.9320 0.9513 2.0450 34 1 1.2538 0.6546 2.5589 35 1 3.2968 -1.5212 3.2218 36 1 0.8584 -0.1983 4.6842 37 1 1.8094 -1.6652 5.2714 38 1 3.9263 -0.2681 5.3354 39 1 2.9764 1.1995 4.7482 40 1 1.2951 0.6345 -2.5391 41 1 1.8464 -1.8832 -3.6943 42 1 3.3669 -0.9622 -3.6043 43 1 3.3028 -1.3156 -6.0252 44 1 1.5876 -1.5618 -6.4982 45 1 1.4755 0.5604 -7.6326 46 1 3.1908 0.1348 -7.9467 47 1 1.6735 3.3252 -6.1845 48 1 2.3634 2.9632 -7.8246 49 1 5.6931 6.6169 -5.3342 50 1 4.6790 1.8160 -7.5276 51 1 5.0331 1.6606 -5.7534 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717221464.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:50 Heat of formation + Delta-G solvation = -62.421629 kcal Electronic energy + Delta-G solvation = -29816.659024 eV Core-core repulsion = 25718.301439 eV Total energy + Delta-G solvation = -4098.357585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.61711 -40.99753 -39.29482 -38.34271 -37.47721 -35.76659 -34.51187 -33.23561 -32.67814 -30.77932 -28.67013 -28.10375 -27.12615 -25.77187 -24.40202 -23.27850 -22.74576 -22.55254 -21.83782 -21.23437 -20.80039 -19.58384 -18.46300 -18.36168 -17.83857 -17.38173 -17.09906 -16.45507 -16.24266 -16.13385 -15.98503 -15.61089 -15.40538 -15.29274 -15.07886 -14.92192 -14.56704 -14.32904 -13.96120 -13.91660 -13.52707 -13.40668 -13.25081 -13.23604 -12.70849 -12.66931 -12.57956 -12.46832 -12.41284 -12.21957 -12.01558 -11.93878 -11.69245 -11.47538 -11.35436 -11.29615 -11.17307 -11.06452 -10.86721 -10.46537 -10.24208 -10.18857 -9.23478 -8.63067 -5.47244 1.32889 1.43398 1.48660 1.62399 1.76242 2.50176 2.55303 2.70793 2.95251 3.00989 3.19050 3.48181 3.58673 3.61675 3.75714 3.81632 3.89235 3.90978 3.94490 3.98578 4.11372 4.14772 4.26701 4.41096 4.43336 4.46377 4.52555 4.58080 4.63911 4.65399 4.67653 4.74161 4.75059 4.77120 4.83422 4.92791 4.95740 4.98187 5.03877 5.13107 5.13975 5.19184 5.21260 5.21458 5.29352 5.34466 5.93447 6.03192 6.25441 6.45704 6.68910 7.12702 7.31398 8.27077 8.89191 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010638 B = 0.002731 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.452810 B =10251.934300 C =11907.232137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 H 0.101 0.899 4 O -0.383 6.383 5 C 0.087 3.913 6 C -0.176 4.176 7 C -0.168 4.168 8 C -0.166 4.166 9 C 0.509 3.491 10 O -0.574 6.574 11 N -0.712 5.712 12 C 0.124 3.876 13 C 0.061 3.939 14 H 0.105 0.895 15 C -0.138 4.138 16 C -0.127 4.127 17 C 0.089 3.911 18 C 0.113 3.887 19 N -0.659 5.659 20 C -0.282 4.282 21 H 0.050 0.950 22 C -0.087 4.087 23 N -0.974 5.974 24 Si 1.109 2.891 25 H -0.304 1.304 26 H -0.288 1.288 27 H -0.253 1.253 28 C 0.078 3.922 29 O -0.367 6.367 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.415 0.585 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.122 0.878 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.246 0.754 50 H 0.074 0.926 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.211 -17.500 8.862 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.007 3.993 3 H 0.118 0.882 4 O -0.302 6.302 5 C 0.011 3.989 6 C -0.195 4.195 7 C -0.205 4.205 8 C -0.203 4.203 9 C 0.296 3.704 10 O -0.452 6.452 11 N -0.365 5.365 12 C 0.001 3.999 13 C 0.004 3.996 14 H 0.123 0.877 15 C -0.176 4.176 16 C -0.165 4.165 17 C 0.048 3.952 18 C -0.012 4.012 19 N -0.388 5.388 20 C -0.410 4.410 21 H 0.068 0.932 22 C -0.279 4.279 23 N -0.620 5.620 24 Si 0.936 3.064 25 H -0.232 1.232 26 H -0.216 1.216 27 H -0.178 1.178 28 C -0.047 4.047 29 O -0.286 6.286 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.251 0.749 41 H 0.116 0.884 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.140 0.860 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.055 0.945 50 H 0.092 0.908 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.074 -18.616 9.366 25.720 hybrid contribution -1.267 1.964 -0.140 2.341 sum -16.340 -16.652 9.226 25.088 Atomic orbital electron populations 1.22197 0.90874 1.03733 1.04988 1.22026 0.96980 0.96281 0.84018 0.88158 1.87994 1.86967 1.35555 1.19721 1.22279 1.00133 0.91825 0.84636 1.22096 1.05652 1.02631 0.89092 1.23173 0.95314 1.02533 0.99504 1.23092 0.99573 0.99452 0.98142 1.20925 0.79004 0.85066 0.85431 1.90680 1.41725 1.25635 1.87207 1.45822 1.57459 1.28200 1.05016 1.21593 0.99304 0.96265 0.82783 1.23586 0.97876 0.83330 0.94774 0.87706 1.23274 1.03883 0.98072 0.92361 1.22925 1.04225 0.91653 0.97736 1.22861 0.94130 0.94961 0.83237 1.22930 0.88382 0.91587 0.98285 1.46006 1.10083 1.06031 1.76659 1.19994 0.92490 0.88320 1.40219 0.93230 1.26940 0.96138 1.04866 0.99922 1.71010 1.37867 0.98683 1.54445 0.83247 0.73463 0.71675 0.78020 1.23230 1.21554 1.17776 1.23430 0.97340 0.84612 0.99295 1.88409 1.76599 1.38000 1.25579 0.88956 0.91914 0.89504 0.92859 0.90822 0.88700 0.87549 0.88047 0.87730 0.87620 0.74892 0.88364 0.93354 0.90323 0.85967 0.87423 0.88325 0.93648 0.90747 0.94476 0.90807 0.94331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 2 C 0.07 1.48 3.13 29.85 0.09 1.57 16 3 H 0.10 1.90 7.79 -2.39 -0.02 1.88 16 4 O -0.38 -10.00 9.53 -129.99 -1.24 -11.24 16 5 C 0.09 1.70 6.03 71.98 0.43 2.14 16 6 C -0.18 -3.29 6.05 -10.80 -0.07 -3.36 16 7 C -0.17 -2.30 10.18 30.61 0.31 -1.99 16 8 C -0.17 -2.30 10.25 30.62 0.31 -1.98 16 9 C 0.51 14.22 7.18 87.66 0.63 14.84 16 10 O -0.57 -21.32 16.51 15.96 0.26 -21.06 16 11 N -0.71 -16.53 5.50 -463.05 -2.55 -19.08 16 12 C 0.12 2.83 5.38 86.38 0.46 3.30 16 13 C 0.06 1.25 3.49 31.28 0.11 1.36 16 14 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.14 -2.15 6.58 32.14 0.21 -1.94 16 16 C -0.13 -2.38 6.39 31.67 0.20 -2.18 16 17 C 0.09 2.80 1.75 -10.68 -0.02 2.78 16 18 C 0.11 4.18 8.20 83.39 0.68 4.87 16 19 N -0.66 -32.78 3.70 -738.95 -2.73 -35.51 16 20 C -0.28 -17.11 11.08 84.03 0.93 -16.18 16 21 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 22 C -0.09 -5.45 5.50 84.86 0.47 -4.99 16 23 N -0.97 -65.24 13.70 21.65 0.30 -64.95 16 24 Si 1.11 56.77 25.17 68.60 1.73 58.50 16 25 H -0.30 -15.84 7.11 99.48 0.71 -15.13 16 26 H -0.29 -14.35 6.49 99.48 0.65 -13.71 16 27 H -0.25 -11.31 6.18 99.48 0.62 -10.70 16 28 C 0.08 3.18 5.17 83.48 0.43 3.61 16 29 O -0.37 -11.75 10.84 -148.98 -1.62 -13.37 16 30 H 0.09 0.96 7.92 -2.39 -0.02 0.94 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.96 7.87 -2.39 -0.02 0.95 16 33 H 0.05 1.04 8.08 -2.39 -0.02 1.02 16 34 H 0.07 1.07 7.60 -2.39 -0.02 1.06 16 35 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.11 1.20 8.03 -2.39 -0.02 1.18 16 37 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 38 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.41 7.96 8.25 -92.71 -0.77 7.19 16 41 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.33 8.05 -2.39 -0.02 1.31 16 44 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.11 1.50 8.13 -2.39 -0.02 1.48 16 46 H 0.10 1.67 7.81 -2.39 -0.02 1.65 16 47 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.07 2.39 8.13 -2.39 -0.02 2.37 16 49 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 50 H 0.07 2.73 7.42 -2.39 -0.02 2.71 16 51 H 0.04 1.74 4.78 -2.39 -0.01 1.72 16 Total: -1.00 -87.30 408.65 -0.01 -87.31 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -0.04 Total: 19.17 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 5.88 Total: 0.22 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -4.98 Total: -119.53 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -2.59 Total: -45.66 kcal Atomic # 14 Polarization: 56.77 SS G_CDS: 1.73 Total: 58.50 kcal Total: -87.30 -0.01 -87.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717221464.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.886 kcal (2) G-P(sol) polarization free energy of solvation -87.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds