Wall clock time and date at job start Tue Mar 31 2020 21:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46975 * 2 1 4 4 O 1.42898 * 109.47480 * 239.99936 * 2 1 3 5 5 C 1.42903 * 113.99784 * 90.00026 * 4 2 1 6 6 C 1.53011 * 109.46724 * 180.02562 * 5 4 2 7 7 H 1.08995 * 110.27181 * 54.29831 * 6 5 4 8 8 C 1.54943 * 110.30530 * 176.38909 * 6 5 4 9 9 C 1.55415 * 100.88985 * 155.28646 * 8 6 5 10 10 C 1.54384 * 102.31095 * 325.99066 * 9 8 6 11 11 O 1.43240 * 107.58570 * 21.28472 * 10 9 8 12 12 C 1.50700 * 109.46998 * 119.99481 * 2 1 3 13 13 O 1.21282 * 119.99611 * 119.99761 * 12 2 1 14 14 N 1.34775 * 120.00247 * 300.00361 * 12 2 1 15 15 C 1.46505 * 119.99841 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.46629 * 180.02562 * 15 14 12 17 17 C 1.29449 * 117.69413 * 94.98555 * 16 15 14 18 18 C 1.49922 * 123.63496 * 180.61639 * 17 16 15 19 19 N 1.47006 * 109.38276 * 349.42751 * 18 17 16 20 20 C 1.36945 * 121.37649 * 222.82515 * 19 18 17 21 21 H 1.07993 * 119.99777 * 154.54505 * 20 19 18 22 22 C 1.38803 * 119.99773 * 334.83327 * 20 19 18 23 23 N 1.31621 * 120.00102 * 347.71556 * 22 20 19 24 24 Si 1.86805 * 120.00029 * 167.71938 * 22 20 19 25 25 H 1.48497 * 109.46754 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47155 * 119.99574 * 24 22 20 27 27 H 1.48499 * 109.47144 * 239.99447 * 24 22 20 28 28 C 1.47336 * 117.25028 * 42.56005 * 19 18 17 29 29 C 1.49967 * 117.69593 * 275.00192 * 16 15 14 30 30 H 1.08992 * 109.47321 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47473 * 300.00661 * 1 2 3 32 32 H 1.09008 * 109.46752 * 60.00339 * 1 2 3 33 33 H 1.09002 * 109.47263 * 299.99794 * 5 4 2 34 34 H 1.08997 * 109.47032 * 60.00488 * 5 4 2 35 35 H 1.08998 * 111.12765 * 273.27712 * 8 6 5 36 36 H 1.08997 * 111.12663 * 37.44108 * 8 6 5 37 37 H 1.09000 * 110.88769 * 207.75116 * 9 8 6 38 38 H 1.09003 * 110.93570 * 84.24778 * 9 8 6 39 39 H 1.08994 * 109.82958 * 261.76812 * 10 9 8 40 40 H 1.08996 * 109.90674 * 140.83845 * 10 9 8 41 41 H 0.97000 * 120.00009 * 0.02562 * 14 12 2 42 42 H 1.09006 * 109.46648 * 60.00564 * 15 14 12 43 43 H 1.08992 * 109.47139 * 300.00133 * 15 14 12 44 44 H 1.08006 * 118.17590 * 0.87550 * 17 16 15 45 45 H 1.08998 * 109.50817 * 229.39740 * 18 17 16 46 46 H 1.09000 * 109.31872 * 109.34277 * 18 17 16 47 47 H 0.97003 * 119.99966 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.77929 * 58.08523 * 28 19 18 49 49 H 1.09005 * 109.77789 * 178.83437 * 28 19 18 50 50 H 1.09003 * 109.31754 * 40.71677 * 29 16 15 51 51 H 1.09007 * 109.31301 * 281.29358 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2002 0.1830 -2.2940 6 6 2.7081 -0.6408 -3.4792 7 1 2.0347 -1.4752 -3.6753 8 6 2.8387 0.2525 -4.7384 9 6 3.9124 -0.5307 -5.5440 10 6 4.8073 -1.1071 -4.4258 11 8 4.0361 -1.1224 -3.2188 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 6 2.1945 -0.9407 3.6508 16 6 1.6917 -0.2305 4.8812 17 6 0.6056 -0.6727 5.4294 18 6 -0.0191 -0.0600 6.6468 19 7 0.9111 0.9150 7.2343 20 6 1.1088 0.9860 8.5875 21 1 2.0371 1.3761 8.9779 22 6 0.1183 0.5512 9.4573 23 7 -1.0916 0.2996 9.0041 24 14 0.5023 0.3231 11.2712 25 1 1.9240 0.6698 11.5235 26 1 -0.3746 1.2093 12.0781 27 1 0.2628 -1.0916 11.6538 28 6 1.6266 1.8085 6.3066 29 6 2.4846 0.9388 5.3840 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.2539 0.6547 -2.5589 34 1 2.9320 0.9513 -2.0449 35 1 1.8961 0.3035 -5.2834 36 1 3.1939 1.2494 -4.4777 37 1 4.4806 0.1400 -6.1885 38 1 3.4555 -1.3309 -6.1263 39 1 5.6870 -0.4771 -4.2946 40 1 5.1139 -2.1214 -4.6815 41 1 1.1486 0.5386 2.5436 42 1 3.2846 -0.9410 3.6510 43 1 1.8309 -1.9682 3.6507 44 1 0.1250 -1.5332 4.9876 45 1 -0.2373 -0.8404 7.3758 46 1 -0.9434 0.4435 6.3632 47 1 -1.7838 -0.0039 9.6120 48 1 0.9090 2.3773 5.7152 49 1 2.2637 2.4908 6.8694 50 1 2.8228 1.5361 4.5372 51 1 3.3524 0.5759 5.9349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718035441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:00 Heat of formation + Delta-G solvation = -91.727942 kcal Electronic energy + Delta-G solvation = -29122.329166 eV Core-core repulsion = 25022.700764 eV Total energy + Delta-G solvation = -4099.628402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.13764 -39.66334 -38.04585 -37.35715 -34.89760 -33.12650 -32.61193 -32.08507 -30.90082 -30.27730 -29.69015 -26.99567 -25.97402 -24.66809 -23.49302 -22.70832 -22.08931 -21.67643 -21.11648 -20.32794 -17.85325 -17.53513 -17.37445 -17.13811 -16.25895 -15.86552 -15.68571 -15.34323 -15.24110 -14.98326 -14.73772 -14.21816 -13.97165 -13.75564 -13.67783 -13.52858 -13.42013 -12.99279 -12.88780 -12.60428 -12.44910 -12.21610 -12.18531 -12.02527 -11.83174 -11.58641 -11.57436 -11.46280 -11.35441 -11.23718 -10.90980 -10.77826 -10.39513 -10.29640 -10.14274 -9.85770 -9.80798 -9.65487 -9.50429 -8.93086 -8.71711 -8.05735 -6.75022 -5.81607 -3.22628 2.47720 2.67757 3.06395 3.36463 3.42303 3.44142 3.46075 3.76631 4.00378 4.37914 4.46119 4.47221 4.55221 4.69146 4.72627 4.78251 4.86358 4.87908 5.03637 5.09847 5.15333 5.20463 5.30780 5.32502 5.35489 5.40263 5.42353 5.43576 5.52528 5.57430 5.67841 5.82937 5.85486 5.96142 6.06256 6.16340 6.32188 6.46084 6.53622 6.68896 6.72205 6.84730 6.86896 7.16250 7.25648 7.32106 7.61144 7.72034 7.81626 8.30442 8.36924 9.17942 9.79858 10.37896 11.28708 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036142 B = 0.001703 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.531115 B =16433.662106 C =16625.842607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.071 3.929 3 H 0.086 0.914 4 O -0.348 6.348 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.080 0.920 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.366 6.366 12 C 0.510 3.490 13 O -0.521 6.521 14 N -0.719 5.719 15 C 0.159 3.841 16 C -0.167 4.167 17 C -0.123 4.123 18 C 0.193 3.807 19 N -0.595 5.595 20 C -0.245 4.245 21 H 0.069 0.931 22 C -0.001 4.001 23 N -0.911 5.911 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.144 3.856 29 C -0.090 4.090 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.400 0.600 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.041 0.959 47 H 0.253 0.747 48 H 0.023 0.977 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.668 2.410 -28.419 28.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 H 0.103 0.897 4 O -0.266 6.266 5 C -0.016 4.016 6 C 0.026 3.974 7 H 0.098 0.902 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.030 4.030 11 O -0.285 6.285 12 C 0.294 3.706 13 O -0.396 6.396 14 N -0.373 5.373 15 C 0.037 3.963 16 C -0.168 4.168 17 C -0.144 4.144 18 C 0.068 3.932 19 N -0.319 5.319 20 C -0.374 4.374 21 H 0.086 0.914 22 C -0.199 4.199 23 N -0.557 5.557 24 Si 0.736 3.264 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.018 3.982 29 C -0.129 4.129 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.235 0.765 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.071 0.929 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.181 1.355 -28.185 28.689 hybrid contribution -0.291 0.489 0.703 0.904 sum 4.890 1.844 -27.482 27.974 Atomic orbital electron populations 1.22256 0.93536 1.03956 1.03163 1.21906 0.94982 0.96304 0.85885 0.89652 1.88108 1.86462 1.33409 1.18586 1.22768 0.99421 0.92967 0.86448 1.22964 0.85879 0.95924 0.92599 0.90209 1.23269 1.00261 0.99613 0.95587 1.23132 0.97388 1.00331 0.98407 1.23152 0.94689 1.00937 0.84245 1.88598 1.22631 1.86387 1.30913 1.20339 0.80830 0.85158 0.84268 1.90731 1.36799 1.25613 1.86481 1.46130 1.53728 1.32321 1.05083 1.20456 0.98907 0.95148 0.81831 1.20489 0.98690 1.00514 0.97107 1.23228 0.95239 0.97603 0.98337 1.19701 0.90584 0.92783 0.90111 1.44105 1.49263 1.36329 1.02155 1.19232 0.98424 1.38765 0.80995 0.91354 1.25028 0.94786 1.01962 0.98105 1.69988 1.01179 1.50395 1.34114 0.86156 0.77688 0.77504 0.85046 1.20298 1.21706 1.21593 1.20951 0.93893 0.91744 0.91655 1.20757 0.98506 0.95148 0.98529 0.90984 0.90630 0.91386 0.91807 0.92402 0.89443 0.90005 0.89847 0.90350 0.91321 0.91334 0.76529 0.91583 0.91630 0.88750 0.88688 0.94141 0.93638 0.95948 0.92452 0.92893 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.42 37.16 0.35 -1.11 16 2 C 0.07 0.77 3.14 -27.88 -0.09 0.69 16 3 H 0.09 0.72 7.79 -51.93 -0.40 0.32 16 4 O -0.35 -4.50 9.52 -57.84 -0.55 -5.05 16 5 C 0.06 0.54 5.45 37.16 0.20 0.75 16 6 C 0.08 0.74 3.72 -25.70 -0.10 0.65 16 7 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 8 C -0.15 -0.80 6.58 -24.42 -0.16 -0.96 16 9 C -0.15 -0.79 7.02 -24.72 -0.17 -0.97 16 10 C 0.05 0.36 7.80 37.88 0.30 0.66 16 11 O -0.37 -4.33 11.04 -35.96 -0.40 -4.73 16 12 C 0.51 7.44 7.23 -10.99 -0.08 7.36 16 13 O -0.52 -10.11 16.50 -14.35 -0.24 -10.35 16 14 N -0.72 -9.48 5.44 -61.47 -0.33 -9.81 16 15 C 0.16 2.44 5.66 -5.19 -0.03 2.41 16 16 C -0.17 -2.84 5.22 -100.99 -0.53 -3.37 16 17 C -0.12 -2.31 9.45 -35.97 -0.34 -2.65 16 18 C 0.19 4.49 5.18 -5.29 -0.03 4.46 16 19 N -0.60 -14.61 3.01 -173.91 -0.52 -15.14 16 20 C -0.24 -6.63 9.72 -15.06 -0.15 -6.77 16 21 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 22 C 0.00 -0.03 5.08 -17.43 -0.09 -0.12 16 23 N -0.91 -25.91 10.97 55.49 0.61 -25.31 16 24 Si 0.91 21.58 29.57 -169.99 -5.03 16.55 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.14 2.90 6.58 -3.54 -0.02 2.88 16 29 C -0.09 -1.55 5.95 -28.19 -0.17 -1.71 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.56 7.56 -51.93 -0.39 0.16 16 32 H 0.07 0.44 7.87 -51.92 -0.41 0.03 16 33 H 0.06 0.39 7.87 -51.93 -0.41 -0.02 16 34 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.39 8.06 -51.93 -0.42 -0.03 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.40 4.40 7.88 -40.82 -0.32 4.08 16 42 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 43 H 0.07 1.05 7.78 -51.93 -0.40 0.65 16 44 H 0.09 1.60 7.73 -52.48 -0.41 1.20 16 45 H 0.10 2.48 6.39 -51.93 -0.33 2.15 16 46 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 50 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -34.21 409.39 -10.34 -44.55 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.95 Total: 0.92 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -1.10 Total: 2.19 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.25 Total: -50.25 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.18 Total: -20.13 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.21 -10.34 -44.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718035441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.175 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds