Wall clock time and date at job start Tue Mar 31 2020 21:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.46975 * 2 1 4 4 O 1.42898 * 109.47480 * 239.99936 * 2 1 3 5 5 C 1.42903 * 113.99784 * 90.00026 * 4 2 1 6 6 C 1.53011 * 109.46724 * 180.02562 * 5 4 2 7 7 H 1.08995 * 110.27181 * 54.29831 * 6 5 4 8 8 C 1.54943 * 110.30530 * 176.38909 * 6 5 4 9 9 C 1.55415 * 100.88985 * 155.28646 * 8 6 5 10 10 C 1.54384 * 102.31095 * 325.99066 * 9 8 6 11 11 O 1.43240 * 107.58570 * 21.28472 * 10 9 8 12 12 C 1.50700 * 109.46998 * 119.99481 * 2 1 3 13 13 O 1.21282 * 119.99611 * 119.99761 * 12 2 1 14 14 N 1.34775 * 120.00247 * 300.00361 * 12 2 1 15 15 C 1.46505 * 119.99841 * 179.97438 * 14 12 2 16 16 C 1.50700 * 109.46629 * 180.02562 * 15 14 12 17 17 C 1.29449 * 117.69413 * 94.98555 * 16 15 14 18 18 C 1.49922 * 123.63496 * 180.61639 * 17 16 15 19 19 N 1.47006 * 109.38276 * 349.42751 * 18 17 16 20 20 C 1.36945 * 121.37649 * 222.82515 * 19 18 17 21 21 H 1.07993 * 119.99777 * 154.54505 * 20 19 18 22 22 C 1.38803 * 119.99773 * 334.83327 * 20 19 18 23 23 N 1.31621 * 120.00102 * 347.71556 * 22 20 19 24 24 Si 1.86805 * 120.00029 * 167.71938 * 22 20 19 25 25 H 1.48497 * 109.46754 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47155 * 119.99574 * 24 22 20 27 27 H 1.48499 * 109.47144 * 239.99447 * 24 22 20 28 28 C 1.47336 * 117.25028 * 42.56005 * 19 18 17 29 29 C 1.49967 * 117.69593 * 275.00192 * 16 15 14 30 30 H 1.08992 * 109.47321 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47473 * 300.00661 * 1 2 3 32 32 H 1.09008 * 109.46752 * 60.00339 * 1 2 3 33 33 H 1.09002 * 109.47263 * 299.99794 * 5 4 2 34 34 H 1.08997 * 109.47032 * 60.00488 * 5 4 2 35 35 H 1.08998 * 111.12765 * 273.27712 * 8 6 5 36 36 H 1.08997 * 111.12663 * 37.44108 * 8 6 5 37 37 H 1.09000 * 110.88769 * 207.75116 * 9 8 6 38 38 H 1.09003 * 110.93570 * 84.24778 * 9 8 6 39 39 H 1.08994 * 109.82958 * 261.76812 * 10 9 8 40 40 H 1.08996 * 109.90674 * 140.83845 * 10 9 8 41 41 H 0.97000 * 120.00009 * 0.02562 * 14 12 2 42 42 H 1.09006 * 109.46648 * 60.00564 * 15 14 12 43 43 H 1.08992 * 109.47139 * 300.00133 * 15 14 12 44 44 H 1.08006 * 118.17590 * 0.87550 * 17 16 15 45 45 H 1.08998 * 109.50817 * 229.39740 * 18 17 16 46 46 H 1.09000 * 109.31872 * 109.34277 * 18 17 16 47 47 H 0.97003 * 119.99966 * 180.02562 * 23 22 20 48 48 H 1.09006 * 109.77929 * 58.08523 * 28 19 18 49 49 H 1.09005 * 109.77789 * 178.83437 * 28 19 18 50 50 H 1.09003 * 109.31754 * 40.71677 * 29 16 15 51 51 H 1.09007 * 109.31301 * 281.29358 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.2002 0.1830 -2.2940 6 6 2.7081 -0.6408 -3.4792 7 1 2.0347 -1.4752 -3.6753 8 6 2.8387 0.2525 -4.7384 9 6 3.9124 -0.5307 -5.5440 10 6 4.8073 -1.1071 -4.4258 11 8 4.0361 -1.1224 -3.2188 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7066 -0.2498 2.4546 15 6 2.1945 -0.9407 3.6508 16 6 1.6917 -0.2305 4.8812 17 6 0.6056 -0.6727 5.4294 18 6 -0.0191 -0.0600 6.6468 19 7 0.9111 0.9150 7.2343 20 6 1.1088 0.9860 8.5875 21 1 2.0371 1.3761 8.9779 22 6 0.1183 0.5512 9.4573 23 7 -1.0916 0.2996 9.0041 24 14 0.5023 0.3231 11.2712 25 1 1.9240 0.6698 11.5235 26 1 -0.3746 1.2093 12.0781 27 1 0.2628 -1.0916 11.6538 28 6 1.6266 1.8085 6.3066 29 6 2.4846 0.9388 5.3840 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.2539 0.6547 -2.5589 34 1 2.9320 0.9513 -2.0449 35 1 1.8961 0.3035 -5.2834 36 1 3.1939 1.2494 -4.4777 37 1 4.4806 0.1400 -6.1885 38 1 3.4555 -1.3309 -6.1263 39 1 5.6870 -0.4771 -4.2946 40 1 5.1139 -2.1214 -4.6815 41 1 1.1486 0.5386 2.5436 42 1 3.2846 -0.9410 3.6510 43 1 1.8309 -1.9682 3.6507 44 1 0.1250 -1.5332 4.9876 45 1 -0.2373 -0.8404 7.3758 46 1 -0.9434 0.4435 6.3632 47 1 -1.7838 -0.0039 9.6120 48 1 0.9090 2.3773 5.7152 49 1 2.2637 2.4908 6.8694 50 1 2.8228 1.5361 4.5372 51 1 3.3524 0.5759 5.9349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718035441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:53:59 Heat of formation + Delta-G solvation = -114.178885 kcal Electronic energy + Delta-G solvation = -29123.302712 eV Core-core repulsion = 25022.700764 eV Total energy + Delta-G solvation = -4100.601948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13522 -40.41782 -39.44805 -38.42285 -36.39981 -34.65605 -33.33155 -33.02878 -32.31233 -31.44002 -30.96729 -28.55524 -26.64426 -26.10145 -24.71094 -24.24968 -22.81205 -22.54835 -22.28333 -21.41429 -19.51305 -18.69864 -18.16364 -17.87180 -17.37589 -17.03171 -16.94232 -16.70773 -16.28584 -16.00482 -15.87614 -15.54819 -15.28851 -15.12591 -15.04139 -14.48668 -14.40102 -14.11397 -13.97478 -13.70308 -13.50974 -13.33147 -13.26574 -13.04616 -12.90322 -12.78683 -12.66757 -12.61995 -12.44990 -12.19894 -12.15158 -12.09543 -12.04281 -11.71173 -11.68204 -11.27106 -11.05156 -10.71346 -10.54768 -10.47572 -10.13688 -9.63667 -8.72274 -7.87737 -5.30863 1.14073 1.46463 1.48629 1.55970 1.58339 2.05104 2.51016 2.81901 2.93692 3.30163 3.55310 3.62736 3.68194 3.87345 3.88943 3.92903 3.96210 3.97503 4.08633 4.15824 4.26114 4.38049 4.44046 4.49515 4.53899 4.58533 4.64257 4.70481 4.74109 4.81327 4.81840 4.85395 4.89121 4.92926 4.97738 5.01327 5.11618 5.20826 5.23086 5.24221 5.34197 5.42067 5.50219 5.62037 5.77249 6.02772 6.16798 6.18960 6.35572 6.56006 7.14742 7.21118 7.84277 8.37760 9.20692 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036142 B = 0.001703 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.531115 B =16433.662106 C =16625.842607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.117 0.883 4 O -0.385 6.385 5 C 0.056 3.944 6 C 0.072 3.928 7 H 0.069 0.931 8 C -0.139 4.139 9 C -0.149 4.149 10 C 0.035 3.965 11 O -0.409 6.409 12 C 0.506 3.494 13 O -0.577 6.577 14 N -0.706 5.706 15 C 0.168 3.832 16 C -0.139 4.139 17 C -0.140 4.140 18 C 0.205 3.795 19 N -0.615 5.615 20 C -0.255 4.255 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.940 5.940 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.291 1.291 27 H -0.293 1.293 28 C 0.139 3.861 29 C -0.085 4.085 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.057 0.943 46 H 0.017 0.983 47 H 0.249 0.751 48 H 0.031 0.969 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 4.180 -30.541 31.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 H 0.134 0.866 4 O -0.304 6.304 5 C -0.020 4.020 6 C 0.015 3.985 7 H 0.087 0.913 8 C -0.176 4.176 9 C -0.186 4.186 10 C -0.041 4.041 11 O -0.330 6.330 12 C 0.293 3.707 13 O -0.455 6.455 14 N -0.359 5.359 15 C 0.045 3.955 16 C -0.140 4.140 17 C -0.160 4.160 18 C 0.080 3.920 19 N -0.340 5.340 20 C -0.385 4.385 21 H 0.087 0.913 22 C -0.248 4.248 23 N -0.587 5.587 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.218 1.218 27 H -0.220 1.220 28 C 0.014 3.986 29 C -0.123 4.123 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.252 0.748 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.076 0.924 46 H 0.034 0.966 47 H 0.059 0.941 48 H 0.049 0.951 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.688 3.173 -30.331 31.023 hybrid contribution -0.376 -0.031 1.309 1.362 sum 5.312 3.142 -29.023 29.672 Atomic orbital electron populations 1.22250 0.91491 1.03394 1.05169 1.22004 0.96301 0.96708 0.83670 0.86596 1.88073 1.86889 1.35542 1.19919 1.23023 1.01124 0.92584 0.85260 1.23191 0.84585 0.96474 0.94283 0.91263 1.23267 1.01370 0.99154 0.93850 1.23138 0.97015 1.00782 0.97669 1.23343 0.95161 1.01269 0.84316 1.88551 1.24235 1.86944 1.33235 1.21122 0.79663 0.84473 0.85435 1.90708 1.39399 1.28182 1.87258 1.45936 1.53399 1.32396 1.04210 1.20217 0.98752 0.94784 0.81794 1.20567 0.97125 0.99527 0.96747 1.22892 0.96748 0.98989 0.97388 1.19334 0.90250 0.91603 0.90848 1.44381 1.49747 1.37650 1.02179 1.19548 0.98335 1.38063 0.82579 0.91269 1.25756 0.94768 1.02427 1.01886 1.70146 1.01899 1.51535 1.35086 0.85190 0.77814 0.76867 0.80495 1.19187 1.21812 1.21971 1.21143 0.94078 0.91847 0.91525 1.20703 0.97552 0.94990 0.99082 0.92830 0.89238 0.88759 0.88523 0.92151 0.87260 0.89101 0.87887 0.89739 0.90932 0.91599 0.74832 0.91622 0.92354 0.87096 0.92435 0.96573 0.94141 0.95064 0.92230 0.89223 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 9.42 71.98 0.68 -1.67 16 2 C 0.07 1.46 3.14 29.85 0.09 1.55 16 3 H 0.12 1.54 7.79 -2.38 -0.02 1.52 16 4 O -0.39 -9.58 9.52 -127.37 -1.21 -10.79 16 5 C 0.06 0.89 5.45 71.99 0.39 1.29 16 6 C 0.07 1.20 3.72 31.26 0.12 1.32 16 7 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 8 C -0.14 -1.13 6.58 32.09 0.21 -0.92 16 9 C -0.15 -1.22 7.02 31.89 0.22 -1.00 16 10 C 0.04 0.53 7.80 72.45 0.56 1.10 16 11 O -0.41 -9.77 11.04 -148.28 -1.64 -11.41 16 12 C 0.51 14.14 7.23 87.66 0.63 14.78 16 13 O -0.58 -22.47 16.50 16.00 0.26 -22.21 16 14 N -0.71 -17.04 5.44 -466.78 -2.54 -19.58 16 15 C 0.17 4.85 5.66 85.63 0.48 5.34 16 16 C -0.14 -4.47 5.22 -15.13 -0.08 -4.55 16 17 C -0.14 -5.17 9.45 26.99 0.26 -4.92 16 18 C 0.20 9.75 5.18 85.29 0.44 10.19 16 19 N -0.62 -30.35 3.01 -704.13 -2.12 -32.48 16 20 C -0.26 -13.92 9.72 84.03 0.82 -13.10 16 21 H 0.07 3.67 7.86 -2.91 -0.02 3.65 16 22 C -0.05 -2.98 5.08 84.86 0.43 -2.55 16 23 N -0.94 -54.97 10.97 21.65 0.24 -54.73 16 24 Si 0.97 44.92 29.57 68.60 2.03 46.94 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 C 0.14 5.40 6.58 86.25 0.57 5.97 16 29 C -0.08 -2.68 5.95 29.65 0.18 -2.51 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.01 7.56 -2.39 -0.02 1.00 16 32 H 0.09 0.86 7.87 -2.38 -0.02 0.84 16 33 H 0.10 0.84 7.87 -2.39 -0.02 0.82 16 34 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 0.59 8.06 -2.39 -0.02 0.57 16 37 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.41 7.78 7.88 -92.71 -0.73 7.05 16 42 H 0.07 1.96 8.11 -2.38 -0.02 1.94 16 43 H 0.06 1.82 7.78 -2.39 -0.02 1.80 16 44 H 0.11 3.71 7.73 -2.91 -0.02 3.69 16 45 H 0.06 3.14 6.39 -2.39 -0.02 3.13 16 46 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 49 H 0.06 2.26 7.96 -2.38 -0.02 2.24 16 50 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 51 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -77.74 409.39 1.20 -76.54 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.18 Total: 17.40 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 6.01 Total: 10.32 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.42 Total: -106.79 kcal Atomic # 8 Polarization: -41.82 SS G_CDS: -2.59 Total: -44.40 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.74 1.20 -76.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718035441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.643 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds