Wall clock time and date at job start Tue Mar 31 2020 21:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47590 * 2 1 4 4 O 1.42893 * 109.47259 * 120.00631 * 2 1 3 5 5 C 1.42904 * 114.00005 * 269.99370 * 4 2 1 6 6 C 1.52997 * 109.47258 * 179.97438 * 5 4 2 7 7 H 1.09003 * 110.27323 * 54.30278 * 6 5 4 8 8 C 1.54951 * 110.30777 * 176.39018 * 6 5 4 9 9 C 1.55421 * 100.89157 * 155.28999 * 8 6 5 10 10 C 1.54386 * 102.30694 * 325.99249 * 9 8 6 11 11 O 1.43239 * 107.59223 * 21.28399 * 10 9 8 12 12 C 1.50707 * 109.46508 * 240.00336 * 2 1 3 13 13 O 1.21288 * 119.99798 * 244.72271 * 12 2 1 14 14 N 1.34771 * 120.00057 * 65.00011 * 12 2 1 15 15 C 1.46501 * 119.99810 * 179.72343 * 14 12 2 16 16 C 1.50701 * 109.47355 * 180.02562 * 15 14 12 17 17 C 1.29452 * 117.69753 * 94.99406 * 16 15 14 18 18 C 1.50326 * 123.65098 * 180.85903 * 17 16 15 19 19 N 1.47009 * 109.16402 * 349.02739 * 18 17 16 20 20 C 1.36935 * 121.37264 * 222.96553 * 19 18 17 21 21 H 1.07997 * 119.99944 * 155.97762 * 20 19 18 22 22 C 1.38816 * 120.00205 * 335.97098 * 20 19 18 23 23 N 1.31624 * 119.99929 * 344.52407 * 22 20 19 24 24 Si 1.86795 * 119.99872 * 164.51837 * 22 20 19 25 25 H 1.48500 * 109.47169 * 60.00742 * 24 22 20 26 26 H 1.48506 * 109.46966 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47673 * 300.00214 * 24 22 20 28 28 C 1.47339 * 117.25245 * 42.94818 * 19 18 17 29 29 C 1.49975 * 117.69129 * 274.74171 * 16 15 14 30 30 H 1.09003 * 109.46777 * 299.99834 * 1 2 3 31 31 H 1.09005 * 109.47450 * 59.99329 * 1 2 3 32 32 H 1.08999 * 109.47590 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47020 * 300.00091 * 5 4 2 34 34 H 1.09002 * 109.46813 * 59.99916 * 5 4 2 35 35 H 1.08997 * 111.12613 * 273.27758 * 8 6 5 36 36 H 1.08997 * 111.12441 * 37.44491 * 8 6 5 37 37 H 1.08996 * 110.88259 * 207.75698 * 9 8 6 38 38 H 1.08997 * 110.93045 * 84.24839 * 9 8 6 39 39 H 1.09004 * 109.83030 * 261.76879 * 10 9 8 40 40 H 1.08999 * 109.90498 * 140.84318 * 10 9 8 41 41 H 0.96997 * 120.00442 * 359.72504 * 14 12 2 42 42 H 1.09000 * 109.47020 * 300.00109 * 15 14 12 43 43 H 1.09001 * 109.47397 * 59.99825 * 15 14 12 44 44 H 1.08001 * 118.17404 * 0.88546 * 17 16 15 45 45 H 1.09002 * 109.51871 * 108.93059 * 18 17 16 46 46 H 1.08996 * 109.52022 * 229.05827 * 18 17 16 47 47 H 0.97000 * 119.99900 * 179.97438 * 23 22 20 48 48 H 1.09007 * 109.77672 * 57.80416 * 28 19 18 49 49 H 1.08991 * 109.78103 * 178.56293 * 28 19 18 50 50 H 1.09000 * 109.31216 * 281.28851 * 29 16 15 51 51 H 1.09004 * 109.31432 * 40.71025 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1666 5 6 2.2002 0.1828 2.2940 6 6 2.7081 -0.6410 3.4790 7 1 3.6006 -1.1992 3.1962 8 6 3.0113 0.2827 4.6856 9 6 2.8597 -0.7168 5.8661 10 6 1.7357 -1.6493 5.3655 11 8 1.6840 -1.5376 3.9384 12 6 2.0322 -0.7104 -1.2306 13 8 2.6572 -1.7441 -1.1215 14 7 1.7917 -0.1941 -2.4521 15 6 2.2851 -0.8815 -3.6480 16 6 1.8859 -0.1036 -4.8753 17 6 2.7446 0.7333 -5.3630 18 6 2.4801 1.5903 -6.5694 19 7 1.2455 1.1338 -7.2242 20 6 1.1615 1.0188 -8.5862 21 1 0.4411 0.3462 -9.0278 22 6 2.0022 1.7666 -9.3991 23 7 2.6573 2.7937 -8.9006 24 14 2.2040 1.3152 -11.2004 25 1 0.8861 1.3918 -11.8806 26 1 3.1498 2.2616 -11.8449 27 1 2.7370 -0.0666 -11.3079 28 6 0.1025 0.8050 -6.3547 29 6 0.5237 -0.3578 -5.4491 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 2.9321 0.9511 2.0449 34 1 1.2540 0.6545 2.5588 35 1 4.0254 0.6787 4.6320 36 1 2.2803 1.0880 4.7573 37 1 2.5578 -0.1996 6.7767 38 1 3.7831 -1.2735 6.0260 39 1 0.7821 -1.3427 5.7952 40 1 1.9544 -2.6790 5.6481 41 1 1.2919 0.6326 -2.5394 42 1 3.3717 -0.9551 -3.6024 43 1 1.8550 -1.8819 -3.6956 44 1 3.7048 0.8204 -4.8763 45 1 2.3656 2.6292 -6.2602 46 1 3.3148 1.5071 -7.2654 47 1 3.2451 3.3160 -9.4686 48 1 -0.1618 1.6720 -5.7492 49 1 -0.7507 0.5068 -6.9639 50 1 0.5428 -1.2815 -6.0275 51 1 -0.1964 -0.4592 -4.6370 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718035443.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:05 Heat of formation + Delta-G solvation = -113.927783 kcal Electronic energy + Delta-G solvation = -29077.474628 eV Core-core repulsion = 24976.883569 eV Total energy + Delta-G solvation = -4100.591060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.13645 -40.41870 -39.43236 -38.42119 -36.39568 -34.63982 -33.33877 -33.01989 -32.31397 -31.41988 -30.97574 -28.55556 -26.64136 -26.10861 -24.72621 -24.23488 -22.80553 -22.53644 -22.28129 -21.42983 -19.50754 -18.69769 -18.33628 -17.73257 -17.36234 -17.02315 -16.80740 -16.72595 -16.37385 -16.06804 -15.70782 -15.63213 -15.29706 -15.20958 -14.96897 -14.59276 -14.37640 -14.14048 -13.93645 -13.68965 -13.44870 -13.32971 -13.26020 -13.06402 -12.90113 -12.76938 -12.66262 -12.58057 -12.47791 -12.25363 -12.18450 -12.12302 -12.05184 -11.69992 -11.68761 -11.27249 -11.04375 -10.68021 -10.55348 -10.48007 -10.13770 -9.64195 -8.73885 -7.87901 -5.28699 1.14112 1.47597 1.50332 1.55267 1.56409 2.03605 2.51888 2.81831 2.92042 3.29290 3.54939 3.62867 3.68052 3.86229 3.88789 3.96004 3.97066 3.97671 4.04270 4.14680 4.27309 4.37767 4.43957 4.48066 4.54680 4.58702 4.64042 4.70238 4.73982 4.80352 4.81941 4.85244 4.89407 4.92832 4.97729 5.01095 5.11497 5.20167 5.22776 5.23870 5.33736 5.41637 5.49306 5.62079 5.77111 6.01661 6.16726 6.16896 6.34673 6.55613 7.14470 7.20029 7.84691 8.38012 9.20419 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.036407 B = 0.001679 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.890941 B =16673.218402 C =16832.770861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.118 0.882 4 O -0.385 6.385 5 C 0.056 3.944 6 C 0.074 3.926 7 H 0.062 0.938 8 C -0.140 4.140 9 C -0.150 4.150 10 C 0.037 3.963 11 O -0.404 6.404 12 C 0.509 3.491 13 O -0.577 6.577 14 N -0.705 5.705 15 C 0.168 3.832 16 C -0.138 4.138 17 C -0.140 4.140 18 C 0.205 3.795 19 N -0.615 5.615 20 C -0.258 4.258 21 H 0.069 0.931 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.967 3.033 25 H -0.275 1.275 26 H -0.294 1.294 27 H -0.282 1.282 28 C 0.139 3.861 29 C -0.084 4.084 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.094 0.906 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.017 0.983 46 H 0.056 0.944 47 H 0.250 0.750 48 H 0.032 0.968 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -1.544 29.868 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.012 3.988 3 H 0.135 0.865 4 O -0.304 6.304 5 C -0.020 4.020 6 C 0.016 3.984 7 H 0.080 0.920 8 C -0.178 4.178 9 C -0.187 4.187 10 C -0.039 4.039 11 O -0.325 6.325 12 C 0.296 3.704 13 O -0.455 6.455 14 N -0.359 5.359 15 C 0.045 3.955 16 C -0.139 4.139 17 C -0.160 4.160 18 C 0.080 3.920 19 N -0.339 5.339 20 C -0.388 4.388 21 H 0.087 0.913 22 C -0.248 4.248 23 N -0.585 5.585 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.220 1.220 27 H -0.208 1.208 28 C 0.014 3.986 29 C -0.123 4.123 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.252 0.748 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.035 0.965 46 H 0.074 0.926 47 H 0.059 0.941 48 H 0.050 0.950 49 H 0.077 0.923 50 H 0.080 0.920 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.080 -2.495 29.728 29.905 hybrid contribution 0.345 0.418 -1.263 1.375 sum -1.735 -2.078 28.465 28.594 Atomic orbital electron populations 1.22211 0.91807 1.03216 1.04904 1.22009 0.96327 0.96741 0.83674 0.86468 1.88078 1.86871 1.35690 1.19766 1.23003 1.01585 0.92576 0.84824 1.23123 0.90576 0.90713 0.93962 0.92027 1.23268 1.04619 0.98033 0.91859 1.23140 0.99060 0.97031 0.99483 1.23343 0.99994 1.00238 0.80352 1.88507 1.55042 1.66780 1.22128 1.21047 0.79033 0.85021 0.85340 1.90698 1.41884 1.25755 1.87202 1.45927 1.57229 1.28322 1.04414 1.20223 0.98461 0.95129 0.81727 1.20577 0.97461 0.99039 0.96842 1.22962 0.98731 0.96829 0.97527 1.19411 0.89414 0.92873 0.90348 1.44391 1.09003 1.78458 1.02047 1.19479 1.19082 1.17666 0.82613 0.91283 1.25709 1.01437 0.95861 1.01753 1.70151 1.33124 1.18663 1.36562 0.85348 0.77596 0.77120 0.80437 1.20059 1.22040 1.20817 1.21183 0.89909 0.95165 0.92373 1.20734 0.93738 0.99043 0.98795 0.89508 0.88876 0.93033 0.89689 0.90967 0.87875 0.88743 0.87754 0.90080 0.90415 0.91559 0.74818 0.92160 0.91610 0.86968 0.96531 0.92573 0.94121 0.95024 0.92320 0.92035 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 9.48 71.98 0.68 -1.82 16 2 C 0.07 1.44 3.13 29.85 0.09 1.53 16 3 H 0.12 1.50 7.79 -2.39 -0.02 1.48 16 4 O -0.39 -9.61 9.52 -127.40 -1.21 -10.82 16 5 C 0.06 0.91 5.45 71.98 0.39 1.30 16 6 C 0.07 1.25 3.72 31.26 0.12 1.37 16 7 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 8 C -0.14 -1.21 6.58 32.09 0.21 -1.00 16 9 C -0.15 -1.21 7.02 31.90 0.22 -0.98 16 10 C 0.04 0.50 7.80 72.45 0.56 1.06 16 11 O -0.40 -8.82 11.04 -148.29 -1.64 -10.46 16 12 C 0.51 13.78 7.18 87.66 0.63 14.41 16 13 O -0.58 -21.67 16.51 15.94 0.26 -21.41 16 14 N -0.71 -16.53 5.51 -466.77 -2.57 -19.10 16 15 C 0.17 4.72 5.66 85.63 0.48 5.20 16 16 C -0.14 -4.38 5.22 -15.13 -0.08 -4.46 16 17 C -0.14 -5.10 9.47 27.11 0.26 -4.84 16 18 C 0.20 9.66 5.23 85.42 0.45 10.11 16 19 N -0.61 -30.19 3.01 -703.02 -2.11 -32.30 16 20 C -0.26 -14.07 9.71 84.03 0.82 -13.25 16 21 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 22 C -0.05 -2.92 5.01 84.86 0.43 -2.49 16 23 N -0.94 -54.71 11.08 21.65 0.24 -54.47 16 24 Si 0.97 44.77 29.58 68.60 2.03 46.80 16 25 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 28 C 0.14 5.37 6.59 86.31 0.57 5.94 16 29 C -0.08 -2.65 5.95 29.72 0.18 -2.48 16 30 H 0.09 1.03 7.87 -2.39 -0.02 1.01 16 31 H 0.09 1.05 7.92 -2.38 -0.02 1.03 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 0.97 8.08 -2.39 -0.02 0.95 16 34 H 0.07 0.94 7.87 -2.39 -0.02 0.92 16 35 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.09 0.59 8.06 -2.39 -0.02 0.57 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.41 7.55 8.24 -92.71 -0.76 6.78 16 42 H 0.06 1.81 7.78 -2.39 -0.02 1.79 16 43 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 44 H 0.11 3.66 7.73 -2.91 -0.02 3.63 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.06 3.04 6.41 -2.39 -0.02 3.02 16 47 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 48 H 0.03 1.17 8.14 -2.38 -0.02 1.16 16 49 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 50 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -75.99 410.33 1.15 -74.84 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: 0.14 Total: 17.33 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.01 Total: 9.60 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.44 Total: -105.87 kcal Atomic # 8 Polarization: -40.10 SS G_CDS: -2.59 Total: -42.69 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -75.99 1.15 -74.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718035443.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.090 kcal (2) G-P(sol) polarization free energy of solvation -75.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds