Wall clock time and date at job start Tue Mar 31 2020 22:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45198 * 109.47165 * 2 1 4 4 C 1.34234 * 117.00080 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99485 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99824 * 179.72300 * 4 3 2 7 7 C 1.50703 * 112.84967 * 50.61038 * 6 4 3 8 8 O 1.21285 * 120.00260 * 129.66501 * 7 6 4 9 9 N 1.34771 * 120.00385 * 309.66541 * 7 6 4 10 10 C 1.46496 * 120.00455 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47440 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.45729 * 295.07198 * 11 10 9 13 13 C 1.53195 * 109.31033 * 178.61502 * 12 11 10 14 14 N 1.46928 * 108.77883 * 54.62948 * 13 12 11 15 15 C 1.36930 * 120.63039 * 126.41306 * 14 13 12 16 16 H 1.08006 * 120.00198 * 331.82826 * 15 14 13 17 17 C 1.38811 * 120.00103 * 151.82718 * 15 14 13 18 18 N 1.31618 * 119.99497 * 343.07166 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 163.07359 * 17 15 14 20 20 H 1.48501 * 109.47128 * 89.99933 * 19 17 15 21 21 H 1.48493 * 109.47408 * 209.99943 * 19 17 15 22 22 H 1.48500 * 109.47385 * 330.00303 * 19 17 15 23 23 C 1.46921 * 118.73681 * 306.39516 * 14 13 12 24 24 C 1.53036 * 109.46463 * 175.00050 * 11 10 9 25 25 C 1.53781 * 113.61859 * 279.41349 * 6 4 3 26 26 C 1.53951 * 87.02044 * 220.05128 * 25 6 4 27 27 C 1.53778 * 113.61354 * 181.80379 * 6 4 3 28 28 H 1.09000 * 109.47378 * 300.00501 * 1 2 3 29 29 H 1.09004 * 109.47297 * 60.00348 * 1 2 3 30 30 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47311 * 239.99892 * 2 1 3 32 32 H 1.09003 * 109.46811 * 119.99836 * 2 1 3 33 33 H 0.97005 * 119.99411 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47182 * 299.99920 * 10 9 7 35 35 H 1.09006 * 109.47156 * 60.00000 * 10 9 7 36 36 H 1.09000 * 109.45685 * 55.02177 * 11 10 9 37 37 H 1.08997 * 109.49410 * 298.55773 * 12 11 10 38 38 H 1.08999 * 109.50333 * 58.66191 * 12 11 10 39 39 H 1.09001 * 109.58511 * 294.84034 * 13 12 11 40 40 H 1.08999 * 109.70119 * 174.48897 * 13 12 11 41 41 H 0.97007 * 119.99544 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58883 * 293.81842 * 23 14 13 43 43 H 1.09001 * 109.70323 * 173.46529 * 23 14 13 44 44 H 1.09006 * 109.49441 * 301.33629 * 24 11 10 45 45 H 1.09003 * 109.49891 * 61.39656 * 24 11 10 46 46 H 1.09004 * 113.60975 * 334.56576 * 25 6 4 47 47 H 1.08999 * 113.61678 * 105.47010 * 25 6 4 48 48 H 1.09001 * 113.53640 * 270.81048 * 26 25 6 49 49 H 1.09000 * 113.74533 * 139.94300 * 26 25 6 50 50 H 1.09001 * 113.61593 * 254.53130 * 27 6 4 51 51 H 1.09005 * 113.61811 * 25.34581 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 -0.0057 7 6 3.3288 3.8202 1.0626 8 8 4.0565 4.4460 1.8041 9 7 1.9908 3.9145 1.1941 10 6 1.4155 4.7732 2.2323 11 6 -0.1114 4.7009 2.1656 12 6 -0.5922 5.2906 0.8377 13 6 -2.1185 5.1850 0.7596 14 7 -2.6983 5.8240 1.9489 15 6 -3.6494 6.8009 1.8222 16 1 -3.6685 7.4250 0.9410 17 6 -4.5890 6.9892 2.8265 18 7 -4.7886 6.0488 3.7255 19 14 -5.5702 8.5769 2.9019 20 1 -6.8155 8.4275 2.1068 21 1 -5.9176 8.8775 4.3140 22 1 -4.7576 9.6880 2.3447 23 6 -2.2384 5.3946 3.2765 24 6 -0.7108 5.4979 3.3265 25 6 3.9446 3.5879 -1.3990 26 6 5.3283 4.1495 -1.0246 27 6 5.4575 2.9681 -0.0486 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.4088 3.4143 0.6008 34 1 1.7531 4.4349 3.2119 35 1 1.7374 5.8022 2.0723 36 1 -0.4291 3.6606 2.2369 37 1 -0.2964 6.3378 0.7765 38 1 -0.1465 4.7371 0.0112 39 1 -2.4111 4.1354 0.7295 40 1 -2.4764 5.6900 -0.1376 41 1 -5.4455 6.1802 4.4271 42 1 -2.5407 4.3621 3.4517 43 1 -2.6733 6.0375 4.0418 44 1 -0.3494 5.0919 4.2714 45 1 -0.4133 6.5431 3.2421 46 1 3.9725 2.8676 -2.2167 47 1 3.1831 4.3557 -1.5356 48 1 5.2850 5.1206 -0.5314 49 1 6.0491 4.1216 -1.8418 50 1 5.9156 3.2363 0.9034 51 1 5.8999 2.0775 -0.4951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155654950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:27 Heat of formation + Delta-G solvation = -94.274198 kcal Electronic energy + Delta-G solvation = -30984.896703 eV Core-core repulsion = 26885.157887 eV Total energy + Delta-G solvation = -4099.738816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.67647 -39.87763 -38.34899 -37.45167 -36.62374 -34.99560 -32.93268 -32.01023 -30.84976 -29.78451 -28.45634 -26.58959 -26.09057 -24.14373 -23.64006 -22.40217 -21.93496 -21.68749 -20.95691 -19.56422 -19.00922 -18.50738 -17.28389 -16.96909 -16.75369 -16.24043 -15.93165 -15.22997 -15.07606 -14.80746 -14.36679 -14.35479 -13.97884 -13.59058 -13.52803 -13.34857 -13.16100 -13.12937 -12.85178 -12.60800 -12.34427 -12.31143 -12.16646 -11.94538 -11.88341 -11.79423 -11.34908 -11.31158 -11.00687 -10.87499 -10.84885 -10.71769 -10.61579 -10.52093 -10.26671 -10.23452 -10.04584 -9.87509 -9.56341 -9.44871 -9.04462 -8.47699 -6.67507 -5.80037 -3.22198 1.68326 2.08801 2.59109 3.03866 3.36480 3.43904 3.46284 3.78934 4.03229 4.31844 4.39477 4.48892 4.51203 4.65824 4.69570 4.96556 4.99343 5.10388 5.21296 5.24808 5.32710 5.36705 5.40439 5.42378 5.50615 5.54911 5.58429 5.59438 5.71920 5.78135 5.84230 5.90316 5.98343 6.03096 6.10048 6.12508 6.31036 6.38713 6.45054 6.58762 6.67121 6.75327 6.80142 6.96710 7.33528 7.35148 7.44242 7.64814 7.78635 8.06831 8.44484 9.20763 9.84376 10.41053 11.28505 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002749 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.437309 B =10183.756135 C =11014.409291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.064 3.936 3 O -0.356 6.356 4 C 0.482 3.518 5 O -0.496 6.496 6 C -0.112 4.112 7 C 0.538 3.462 8 O -0.528 6.528 9 N -0.711 5.711 10 C 0.122 3.878 11 C -0.089 4.089 12 C -0.127 4.127 13 C 0.146 3.854 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.064 0.936 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.901 3.099 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C 0.173 3.827 24 C -0.133 4.133 25 C -0.109 4.109 26 C -0.137 4.137 27 C -0.100 4.100 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.408 0.592 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.047 0.953 39 H 0.016 0.984 40 H 0.052 0.948 41 H 0.253 0.747 42 H 0.017 0.983 43 H 0.088 0.912 44 H 0.050 0.950 45 H 0.058 0.942 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.092 0.908 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.558 -9.976 -9.783 21.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.009 4.009 3 O -0.273 6.273 4 C 0.324 3.676 5 O -0.383 6.383 6 C -0.116 4.116 7 C 0.321 3.679 8 O -0.405 6.405 9 N -0.363 5.363 10 C -0.001 4.001 11 C -0.108 4.108 12 C -0.166 4.166 13 C 0.020 3.980 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.731 3.269 20 H -0.214 1.214 21 H -0.216 1.216 22 H -0.205 1.205 23 C 0.047 3.953 24 C -0.173 4.173 25 C -0.147 4.147 26 C -0.175 4.175 27 C -0.138 4.138 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.035 0.965 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.111 0.889 49 H 0.100 0.900 50 H 0.111 0.889 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 17.102 -9.834 -9.094 21.723 hybrid contribution -0.942 0.200 -0.109 0.969 sum 16.160 -9.634 -9.203 20.944 Atomic orbital electron populations 1.21850 0.91919 1.03302 1.04250 1.23120 0.95837 0.79366 1.02602 1.86438 1.23941 1.33309 1.83590 1.23024 0.80882 0.91337 0.72347 1.90661 1.60514 1.42258 1.44869 1.22285 0.99809 0.89874 0.99659 1.19271 0.82873 0.81962 0.83766 1.90717 1.60050 1.45666 1.44035 1.46131 1.06073 1.47678 1.36445 1.21656 0.94051 0.94209 0.90175 1.21304 0.91339 1.00546 0.97620 1.22074 0.99101 1.00383 0.95066 1.20878 0.90310 0.95605 0.91250 1.44041 1.44557 1.43043 0.99848 1.19168 1.05702 1.07811 1.05521 0.91792 1.25036 0.97068 0.97851 0.99681 1.70029 1.35602 1.31341 1.17777 0.86322 0.79996 0.83663 0.76941 1.21436 1.21568 1.20487 1.20745 0.87472 0.98280 0.88831 1.22183 1.00571 0.99200 0.95314 1.22951 0.99649 1.00174 0.91953 1.22893 0.96229 0.98923 0.99416 1.22856 0.89160 0.99608 1.02146 0.90900 0.91107 0.90055 0.91104 0.91114 0.75474 0.91672 0.91337 0.91275 0.92154 0.93448 0.96634 0.92912 0.93657 0.96497 0.89433 0.93089 0.92356 0.88426 0.89371 0.88930 0.90046 0.88897 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.36 -3.70 8.15 -39.27 -0.32 -4.02 16 4 C 0.48 5.55 7.00 36.00 0.25 5.80 16 5 O -0.50 -6.63 15.66 -18.75 -0.29 -6.92 16 6 C -0.11 -1.20 1.20 -156.00 -0.19 -1.38 16 7 C 0.54 7.07 6.62 -10.99 -0.07 7.00 16 8 O -0.53 -8.50 15.83 5.55 0.09 -8.41 16 9 N -0.71 -8.89 5.05 -60.29 -0.30 -9.19 16 10 C 0.12 1.70 5.06 -4.04 -0.02 1.68 16 11 C -0.09 -1.37 2.19 -90.58 -0.20 -1.57 16 12 C -0.13 -2.02 5.25 -26.61 -0.14 -2.16 16 13 C 0.15 2.89 6.52 -3.71 -0.02 2.87 16 14 N -0.59 -14.36 2.99 -172.32 -0.52 -14.87 16 15 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 16 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 19 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 C 0.17 3.97 5.30 -3.72 -0.02 3.95 16 24 C -0.13 -2.40 5.36 -26.62 -0.14 -2.55 16 25 C -0.11 -0.88 7.22 -25.83 -0.19 -1.07 16 26 C -0.14 -1.11 7.76 -25.83 -0.20 -1.31 16 27 C -0.10 -0.98 6.78 -25.92 -0.18 -1.15 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.41 4.64 5.76 -40.82 -0.24 4.41 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 39 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.09 2.28 6.07 -51.93 -0.31 1.97 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 47 H 0.09 0.69 8.09 -51.93 -0.42 0.27 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.09 1.02 7.41 -51.93 -0.38 0.63 16 51 H 0.10 0.93 7.45 -51.93 -0.39 0.54 16 LS Contribution 403.29 15.07 6.08 6.08 Total: -1.00 -31.50 403.29 -9.25 -40.74 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.83 Total: 2.25 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -0.73 Total: 3.16 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.20 Total: -49.25 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.53 Total: -19.36 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.50 -9.25 -40.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155654950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.532 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds