Wall clock time and date at job start Tue Mar 31 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45198 * 109.47165 * 2 1 4 4 C 1.34234 * 117.00080 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99485 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99824 * 179.72300 * 4 3 2 7 7 C 1.50703 * 112.84967 * 50.61038 * 6 4 3 8 8 O 1.21285 * 120.00260 * 129.66501 * 7 6 4 9 9 N 1.34771 * 120.00385 * 309.66541 * 7 6 4 10 10 C 1.46496 * 120.00455 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.47440 * 179.97438 * 10 9 7 12 12 C 1.53043 * 109.45729 * 295.07198 * 11 10 9 13 13 C 1.53195 * 109.31033 * 178.61502 * 12 11 10 14 14 N 1.46928 * 108.77883 * 54.62948 * 13 12 11 15 15 C 1.36930 * 120.63039 * 126.41306 * 14 13 12 16 16 H 1.08006 * 120.00198 * 331.82826 * 15 14 13 17 17 C 1.38811 * 120.00103 * 151.82718 * 15 14 13 18 18 N 1.31618 * 119.99497 * 343.07166 * 17 15 14 19 19 Si 1.86796 * 120.00261 * 163.07359 * 17 15 14 20 20 H 1.48501 * 109.47128 * 89.99933 * 19 17 15 21 21 H 1.48493 * 109.47408 * 209.99943 * 19 17 15 22 22 H 1.48500 * 109.47385 * 330.00303 * 19 17 15 23 23 C 1.46921 * 118.73681 * 306.39516 * 14 13 12 24 24 C 1.53036 * 109.46463 * 175.00050 * 11 10 9 25 25 C 1.53781 * 113.61859 * 279.41349 * 6 4 3 26 26 C 1.53951 * 87.02044 * 220.05128 * 25 6 4 27 27 C 1.53778 * 113.61354 * 181.80379 * 6 4 3 28 28 H 1.09000 * 109.47378 * 300.00501 * 1 2 3 29 29 H 1.09004 * 109.47297 * 60.00348 * 1 2 3 30 30 H 1.09000 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47311 * 239.99892 * 2 1 3 32 32 H 1.09003 * 109.46811 * 119.99836 * 2 1 3 33 33 H 0.97005 * 119.99411 * 359.97438 * 9 7 6 34 34 H 1.08995 * 109.47182 * 299.99920 * 10 9 7 35 35 H 1.09006 * 109.47156 * 60.00000 * 10 9 7 36 36 H 1.09000 * 109.45685 * 55.02177 * 11 10 9 37 37 H 1.08997 * 109.49410 * 298.55773 * 12 11 10 38 38 H 1.08999 * 109.50333 * 58.66191 * 12 11 10 39 39 H 1.09001 * 109.58511 * 294.84034 * 13 12 11 40 40 H 1.08999 * 109.70119 * 174.48897 * 13 12 11 41 41 H 0.97007 * 119.99544 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58883 * 293.81842 * 23 14 13 43 43 H 1.09001 * 109.70323 * 173.46529 * 23 14 13 44 44 H 1.09006 * 109.49441 * 301.33629 * 24 11 10 45 45 H 1.09003 * 109.49891 * 61.39656 * 24 11 10 46 46 H 1.09004 * 113.60975 * 334.56576 * 25 6 4 47 47 H 1.08999 * 113.61678 * 105.47010 * 25 6 4 48 48 H 1.09001 * 113.53640 * 270.81048 * 26 25 6 49 49 H 1.09000 * 113.74533 * 139.94300 * 26 25 6 50 50 H 1.09001 * 113.61593 * 254.53130 * 27 6 4 51 51 H 1.09005 * 113.61811 * 25.34581 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 -0.0057 7 6 3.3288 3.8202 1.0626 8 8 4.0565 4.4460 1.8041 9 7 1.9908 3.9145 1.1941 10 6 1.4155 4.7732 2.2323 11 6 -0.1114 4.7009 2.1656 12 6 -0.5922 5.2906 0.8377 13 6 -2.1185 5.1850 0.7596 14 7 -2.6983 5.8240 1.9489 15 6 -3.6494 6.8009 1.8222 16 1 -3.6685 7.4250 0.9410 17 6 -4.5890 6.9892 2.8265 18 7 -4.7886 6.0488 3.7255 19 14 -5.5702 8.5769 2.9019 20 1 -6.8155 8.4275 2.1068 21 1 -5.9176 8.8775 4.3140 22 1 -4.7576 9.6880 2.3447 23 6 -2.2384 5.3946 3.2765 24 6 -0.7108 5.4979 3.3265 25 6 3.9446 3.5879 -1.3990 26 6 5.3283 4.1495 -1.0246 27 6 5.4575 2.9681 -0.0486 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.4088 3.4143 0.6008 34 1 1.7531 4.4349 3.2119 35 1 1.7374 5.8022 2.0723 36 1 -0.4291 3.6606 2.2369 37 1 -0.2964 6.3378 0.7765 38 1 -0.1465 4.7371 0.0112 39 1 -2.4111 4.1354 0.7295 40 1 -2.4764 5.6900 -0.1376 41 1 -5.4455 6.1802 4.4271 42 1 -2.5407 4.3621 3.4517 43 1 -2.6733 6.0375 4.0418 44 1 -0.3494 5.0919 4.2714 45 1 -0.4133 6.5431 3.2421 46 1 3.9725 2.8676 -2.2167 47 1 3.1831 4.3557 -1.5356 48 1 5.2850 5.1206 -0.5314 49 1 6.0491 4.1216 -1.8418 50 1 5.9156 3.2363 0.9034 51 1 5.8999 2.0775 -0.4951 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155654950.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:26 Heat of formation + Delta-G solvation = -111.864090 kcal Electronic energy + Delta-G solvation = -30985.659458 eV Core-core repulsion = 26885.157887 eV Total energy + Delta-G solvation = -4100.501571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.54849 -40.83371 -39.60941 -38.56097 -37.50111 -36.40779 -34.52662 -32.77984 -32.46634 -31.40582 -29.49867 -27.96882 -26.80778 -25.75429 -24.41940 -23.85135 -23.11773 -22.57928 -22.25924 -20.86456 -20.16965 -19.41410 -18.64147 -18.13036 -17.76764 -17.10992 -17.03774 -16.77213 -16.23870 -15.95928 -15.66820 -15.29002 -15.21038 -15.12365 -14.91276 -14.67199 -14.32357 -14.05877 -13.80825 -13.74203 -13.53424 -13.41020 -13.19046 -12.98059 -12.92891 -12.81501 -12.70260 -12.53984 -12.50245 -12.25293 -12.04058 -11.99139 -11.82532 -11.62014 -11.59165 -11.56084 -11.41201 -11.24547 -11.09684 -10.90813 -10.51200 -10.14918 -8.64289 -7.85550 -5.29987 0.79891 1.21659 1.46930 1.49230 1.58306 1.67337 2.03859 2.52935 2.98796 3.29318 3.30408 3.56922 3.60483 3.72953 3.74001 3.84794 3.95275 4.01713 4.05230 4.10237 4.30706 4.35745 4.52139 4.56149 4.64469 4.65836 4.69837 4.73870 4.79947 4.81456 4.87872 4.93920 4.94793 4.95632 5.02298 5.04170 5.12888 5.15587 5.29221 5.30270 5.32816 5.35098 5.38931 5.45034 5.57384 5.68143 5.80778 6.41042 6.42297 6.48803 7.05681 7.18046 7.90609 8.41213 9.20578 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.002749 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.437309 B =10183.756135 C =11014.409291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.485 3.515 5 O -0.518 6.518 6 C -0.117 4.117 7 C 0.538 3.462 8 O -0.561 6.561 9 N -0.704 5.704 10 C 0.134 3.866 11 C -0.077 4.077 12 C -0.113 4.113 13 C 0.141 3.859 14 N -0.611 5.611 15 C -0.261 4.261 16 H 0.065 0.935 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.285 1.285 21 H -0.294 1.294 22 H -0.271 1.271 23 C 0.179 3.821 24 C -0.122 4.122 25 C -0.099 4.099 26 C -0.130 4.130 27 C -0.103 4.103 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.082 0.918 39 H 0.018 0.982 40 H 0.052 0.948 41 H 0.249 0.751 42 H -0.003 1.003 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.117 0.883 47 H 0.095 0.905 48 H 0.079 0.921 49 H 0.105 0.895 50 H 0.075 0.925 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.624 -10.204 -11.769 23.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.328 3.672 5 O -0.407 6.407 6 C -0.121 4.121 7 C 0.323 3.677 8 O -0.439 6.439 9 N -0.356 5.356 10 C 0.010 3.990 11 C -0.096 4.096 12 C -0.152 4.152 13 C 0.016 3.984 14 N -0.335 5.335 15 C -0.392 4.392 16 H 0.083 0.917 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.792 3.208 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.196 1.196 23 C 0.053 3.947 24 C -0.162 4.162 25 C -0.137 4.137 26 C -0.167 4.167 27 C -0.140 4.140 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.101 0.899 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.016 0.984 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.135 0.865 47 H 0.113 0.887 48 H 0.098 0.902 49 H 0.124 0.876 50 H 0.093 0.907 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 18.168 -10.072 -11.117 23.561 hybrid contribution -1.289 0.201 0.496 1.396 sum 16.879 -9.871 -10.621 22.252 Atomic orbital electron populations 1.21858 0.90858 1.04364 1.03803 1.23307 0.96599 0.78608 1.02889 1.86431 1.23331 1.34377 1.83215 1.23139 0.81058 0.91297 0.71702 1.90653 1.61040 1.42928 1.46054 1.22348 1.00116 0.89170 1.00500 1.19620 0.82633 0.81668 0.83748 1.90707 1.60748 1.47136 1.45346 1.46021 1.06149 1.47337 1.36098 1.21381 0.92615 0.94349 0.90624 1.21136 0.92244 1.00133 0.96130 1.21919 0.96103 1.00670 0.96537 1.21060 0.92675 0.95165 0.89530 1.44319 1.44544 1.43203 1.01439 1.19500 1.05887 1.08412 1.05385 0.91713 1.25755 0.98502 1.00588 0.99749 1.70177 1.36441 1.33015 1.18426 0.85342 0.78653 0.80389 0.76464 1.21146 1.22031 1.19639 1.20538 0.90462 0.96016 0.87680 1.21980 0.96954 0.99621 0.97611 1.23038 0.99671 1.00366 0.90618 1.22854 0.96980 0.97451 0.99434 1.22894 0.88420 1.00765 1.01945 0.92037 0.90733 0.88331 0.90144 0.91581 0.74589 0.91897 0.91672 0.90780 0.92805 0.89929 0.96437 0.92947 0.94202 0.98448 0.93121 0.91420 0.92916 0.86453 0.88671 0.90184 0.87620 0.90663 0.87278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.06 0.91 6.19 71.98 0.45 1.36 16 3 O -0.36 -6.68 8.15 -51.46 -0.42 -7.10 16 4 C 0.49 10.28 7.00 71.23 0.50 10.78 16 5 O -0.52 -13.12 15.66 21.97 0.34 -12.77 16 6 C -0.12 -2.28 1.20 -53.15 -0.06 -2.34 16 7 C 0.54 13.32 6.62 87.66 0.58 13.90 16 8 O -0.56 -17.60 15.83 -3.04 -0.05 -17.65 16 9 N -0.70 -16.04 5.05 -463.06 -2.34 -18.38 16 10 C 0.13 3.47 5.06 86.38 0.44 3.90 16 11 C -0.08 -2.24 2.19 -10.77 -0.02 -2.26 16 12 C -0.11 -3.34 5.25 30.67 0.16 -3.18 16 13 C 0.14 5.42 6.52 86.36 0.56 5.98 16 14 N -0.61 -29.78 2.99 -699.10 -2.09 -31.87 16 15 C -0.26 -14.19 9.58 84.03 0.81 -13.38 16 16 H 0.07 3.43 7.89 -2.91 -0.02 3.40 16 17 C -0.05 -2.81 4.92 84.86 0.42 -2.39 16 18 N -0.93 -54.81 11.19 21.65 0.24 -54.57 16 19 Si 0.96 44.55 29.59 68.60 2.03 46.58 16 20 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 C 0.18 8.38 5.30 86.36 0.46 8.83 16 24 C -0.12 -4.34 5.36 30.67 0.16 -4.18 16 25 C -0.10 -1.31 7.22 31.18 0.23 -1.08 16 26 C -0.13 -1.79 7.76 31.18 0.24 -1.55 16 27 C -0.10 -1.86 6.78 31.12 0.21 -1.65 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.42 8.27 5.76 -92.70 -0.53 7.73 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.89 7.15 -2.39 -0.02 1.87 16 39 H 0.02 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 41 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 42 H 0.00 -0.13 8.14 -2.38 -0.02 -0.15 16 43 H 0.05 2.74 6.07 -2.39 -0.01 2.72 16 44 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.12 1.12 8.09 -2.38 -0.02 1.10 16 47 H 0.09 1.15 8.09 -2.39 -0.02 1.13 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 50 H 0.07 1.63 7.41 -2.39 -0.02 1.61 16 51 H 0.11 1.81 7.45 -2.38 -0.02 1.80 16 Total: -1.00 -69.09 403.29 3.96 -65.13 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.38 Total: 19.07 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: 5.86 Total: 11.55 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -4.19 Total: -104.82 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -0.12 Total: -37.51 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.09 3.96 -65.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155654950.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.730 kcal (2) G-P(sol) polarization free energy of solvation -69.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds