Wall clock time and date at job start Tue Mar 31 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46864 * 2 1 4 4 C 1.42898 * 113.99908 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.88820 * 21.83693 * 4 3 2 6 6 C 1.53952 * 113.66364 * 250.49108 * 4 3 2 7 7 C 1.53952 * 87.29627 * 220.79276 * 6 4 3 8 8 H 1.08998 * 113.65840 * 139.29933 * 7 6 4 9 9 N 1.46498 * 113.65985 * 270.26239 * 7 6 4 10 10 C 1.34783 * 119.99907 * 253.98319 * 9 7 6 11 11 O 1.21343 * 119.99770 * 0.02562 * 10 9 7 12 12 C 1.49444 * 119.99829 * 180.02562 * 10 9 7 13 13 O 1.21353 * 120.00395 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99750 * 179.72509 * 12 10 9 15 15 C 1.46504 * 119.99858 * 180.27542 * 14 12 10 16 16 C 1.53004 * 109.46932 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46992 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46983 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00145 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47515 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47139 * 120.00326 * 22 20 18 25 25 H 1.48502 * 109.47343 * 240.00535 * 22 20 18 26 26 C 1.52909 * 86.88438 * 24.78058 * 7 6 4 27 27 C 1.52908 * 121.14180 * 209.33879 * 26 7 6 28 28 C 1.53959 * 86.78248 * 209.37596 * 27 26 7 29 29 C 1.52905 * 121.14029 * 100.76712 * 26 7 6 30 30 H 1.08996 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47053 * 300.00211 * 1 2 3 32 32 H 1.08998 * 109.46764 * 60.00916 * 1 2 3 33 33 H 1.09000 * 109.47548 * 239.99684 * 2 1 3 34 34 H 1.09003 * 109.47217 * 119.99110 * 2 1 3 35 35 H 1.09002 * 113.58020 * 106.19031 * 6 4 3 36 36 H 1.09000 * 113.64660 * 335.40947 * 6 4 3 37 37 H 0.97000 * 120.00381 * 73.98593 * 9 7 6 38 38 H 0.97000 * 120.00317 * 0.28447 * 14 12 10 39 39 H 1.08992 * 109.47142 * 300.00148 * 15 14 12 40 40 H 1.08997 * 109.46860 * 60.00391 * 15 14 12 41 41 H 1.08998 * 109.47524 * 300.00356 * 16 15 14 42 42 H 1.09005 * 109.46510 * 60.00408 * 16 15 14 43 43 H 1.08998 * 109.47307 * 300.00526 * 17 16 15 44 44 H 1.08997 * 109.46799 * 60.00313 * 17 16 15 45 45 H 0.97003 * 120.00173 * 179.97438 * 21 20 18 46 46 H 1.09005 * 113.65495 * 323.84398 * 27 26 7 47 47 H 1.08989 * 113.66975 * 94.90168 * 27 26 7 48 48 H 1.08998 * 113.57259 * 270.12876 * 28 27 26 49 49 H 1.08993 * 113.65159 * 139.34684 * 28 27 26 50 50 H 1.08996 * 113.66435 * 265.10147 * 29 26 7 51 51 H 1.09003 * 113.66343 * 36.15604 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9272 0.5644 -0.3726 6 6 4.0090 1.9786 1.3299 7 6 4.9826 2.8268 0.4915 8 1 5.1369 3.8318 0.8841 9 7 6.2373 2.1402 0.1743 10 6 7.3747 2.4877 0.8084 11 8 7.3593 3.3690 1.6424 12 6 8.6547 1.7877 0.4844 13 8 8.6701 0.9066 -0.3499 14 7 9.7931 2.1390 1.1146 15 6 11.0490 1.4569 0.7926 16 6 12.1791 2.0410 1.6428 17 6 13.4906 1.3282 1.3070 18 6 14.6035 1.9031 2.1448 19 1 14.3961 2.6971 2.8469 20 6 15.8866 1.4154 2.0151 21 7 16.1393 0.4488 1.1599 22 14 17.2659 2.1275 3.0541 23 1 16.7239 3.1958 3.9317 24 1 17.8601 1.0541 3.8909 25 1 18.3105 2.6983 2.1662 26 6 3.9452 2.7585 -0.6298 27 6 4.3641 2.8147 -2.0992 28 6 2.9953 3.4633 -2.3747 29 6 3.0031 3.9302 -0.9078 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 4.5014 1.2069 1.9217 36 1 3.3036 2.5719 1.9117 37 1 6.2495 1.4354 -0.4921 38 1 9.7809 2.8434 1.7813 39 1 10.9488 0.3924 1.0039 40 1 11.2785 1.5977 -0.2636 41 1 12.2794 3.1057 1.4319 42 1 11.9493 1.8998 2.6989 43 1 13.3899 0.2636 1.5182 44 1 13.7205 1.4689 0.2509 45 1 17.0421 0.1059 1.0683 46 1 5.2084 3.4779 -2.2883 47 1 4.4835 1.8334 -2.5581 48 1 2.2087 2.7427 -2.5988 49 1 3.0359 4.2819 -3.0932 50 1 2.0352 3.8399 -0.4148 51 1 3.4647 4.9069 -0.7620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343301266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:34 Heat of formation + Delta-G solvation = -89.923445 kcal Electronic energy + Delta-G solvation = -28900.465912 eV Core-core repulsion = 24800.915759 eV Total energy + Delta-G solvation = -4099.550153 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.57424 -40.28527 -38.42962 -37.61189 -35.94044 -35.41829 -33.44270 -32.92356 -31.26518 -31.20357 -27.37376 -26.23174 -25.74140 -25.02100 -24.06753 -23.15631 -22.61695 -21.17777 -20.77075 -20.21987 -19.06422 -18.11441 -17.40628 -16.77527 -16.39525 -16.32219 -16.10463 -15.96756 -15.75952 -15.29541 -14.88319 -14.72949 -14.44959 -13.98218 -13.70247 -13.62533 -13.44019 -13.20933 -13.07291 -12.74393 -12.52794 -12.33780 -12.31138 -11.91938 -11.90181 -11.82201 -11.73175 -11.62343 -11.39330 -10.94097 -10.80852 -10.78669 -10.77648 -10.59141 -10.52383 -9.92328 -9.81959 -9.75263 -9.43568 -9.38540 -9.13341 -9.01042 -8.39512 -6.04087 -4.07034 1.36790 2.23899 3.16309 3.18303 3.29344 3.37013 3.40850 3.56592 3.83755 4.01797 4.21766 4.30806 4.35934 4.42508 4.46096 4.48282 4.62385 4.72421 4.83315 4.93219 5.02794 5.09237 5.27938 5.28828 5.32082 5.39273 5.44612 5.46383 5.47919 5.52921 5.57028 5.58663 5.66954 5.67338 5.71356 5.93265 6.05293 6.05665 6.05877 6.23894 6.52115 6.66859 6.82271 6.88362 6.93434 7.36985 7.60449 7.68487 7.71701 7.94284 8.01334 8.35558 8.99696 9.57497 11.07197 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.001626 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.791894 B =17212.220731 C =17429.330824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.368 6.368 4 C 0.089 3.911 5 H 0.090 0.910 6 C -0.164 4.164 7 C 0.133 3.867 8 H 0.113 0.887 9 N -0.686 5.686 10 C 0.512 3.488 11 O -0.517 6.517 12 C 0.500 3.500 13 O -0.526 6.526 14 N -0.690 5.690 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.109 4.109 27 C -0.128 4.128 28 C -0.134 4.134 29 C -0.102 4.102 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.413 0.587 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.211 2.522 -5.024 33.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.030 3.970 5 H 0.107 0.893 6 C -0.203 4.203 7 C 0.027 3.973 8 H 0.131 0.869 9 N -0.339 5.339 10 C 0.293 3.707 11 O -0.391 6.391 12 C 0.280 3.720 13 O -0.403 6.403 14 N -0.342 5.342 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.110 4.110 27 C -0.166 4.166 28 C -0.172 4.172 29 C -0.140 4.140 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.249 0.751 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -33.153 2.570 -5.076 33.637 hybrid contribution 1.069 -0.056 0.568 1.212 sum -32.083 2.514 -4.508 32.496 Atomic orbital electron populations 1.21738 0.93710 1.02275 1.03084 1.22526 0.95632 0.83946 1.00119 1.87933 1.20072 1.26164 1.94500 1.23478 0.81475 0.96315 0.95695 0.89266 1.23961 0.98461 1.00601 0.97298 1.21610 0.81840 0.97672 0.96151 0.86874 1.45356 1.06649 1.39513 1.42336 1.20367 0.85142 0.83442 0.81722 1.90762 1.86175 1.30283 1.31913 1.19974 0.85056 0.84134 0.82851 1.90762 1.86146 1.30825 1.32593 1.46077 1.07840 1.39117 1.41176 1.21854 0.81182 0.96972 1.00833 1.21932 0.95379 1.00430 0.98346 1.19039 0.89301 0.95718 0.97323 1.21242 0.92970 1.19631 1.22239 0.92501 1.25026 0.98889 0.95039 0.95501 1.69973 1.20720 1.26936 1.35649 0.86517 0.82102 0.79020 0.80241 1.19721 1.21003 1.20993 1.23275 0.96212 0.97004 0.94479 1.22750 0.98057 1.01685 0.94063 1.22778 0.97331 1.00502 0.96576 1.22458 0.99214 0.95865 0.96461 0.91152 0.91849 0.91888 0.93375 0.93327 0.90508 0.87986 0.75105 0.75276 0.91078 0.91053 0.92401 0.92415 0.96190 0.96176 0.92977 0.89349 0.91199 0.89980 0.91398 0.90110 0.89669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.05 0.33 6.51 37.16 0.24 0.57 16 3 O -0.37 -2.84 9.55 -35.23 -0.34 -3.18 16 4 C 0.09 0.64 4.10 -26.12 -0.11 0.53 16 5 H 0.09 0.59 7.90 -51.93 -0.41 0.18 16 6 C -0.16 -1.28 7.72 -25.74 -0.20 -1.48 16 7 C 0.13 1.13 4.09 -67.48 -0.28 0.86 16 8 H 0.11 1.09 7.50 -51.93 -0.39 0.70 16 9 N -0.69 -6.77 5.05 -53.80 -0.27 -7.04 16 10 C 0.51 6.54 7.89 -11.58 -0.09 6.45 16 11 O -0.52 -7.55 16.10 5.50 0.09 -7.46 16 12 C 0.50 7.30 7.89 -11.59 -0.09 7.21 16 13 O -0.53 -8.69 16.48 5.49 0.09 -8.60 16 14 N -0.69 -10.19 5.55 -60.73 -0.34 -10.52 16 15 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 16 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 18 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.56 13.29 55.43 0.74 -25.83 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C -0.11 -0.78 0.93 -154.55 -0.14 -0.92 16 27 C -0.13 -0.88 7.46 -26.28 -0.20 -1.07 16 28 C -0.13 -0.85 8.08 -25.74 -0.21 -1.06 16 29 C -0.10 -0.68 7.56 -26.28 -0.20 -0.88 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.41 3.71 8.05 -40.82 -0.33 3.39 16 38 H 0.41 5.55 7.94 -40.82 -0.32 5.22 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 46 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 51 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 421.53 15.07 6.35 6.35 Total: -1.00 -31.62 421.53 -9.30 -40.92 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -9.00 Total: 2.57 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.60 Total: -3.62 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.13 Total: -43.39 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.16 Total: -19.24 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -31.62 -9.30 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343301266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.004 kcal (2) G-P(sol) polarization free energy of solvation -31.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds