Wall clock time and date at job start Tue Mar 31 2020 21:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46864 * 2 1 4 4 C 1.42898 * 113.99908 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.88820 * 21.83693 * 4 3 2 6 6 C 1.53952 * 113.66364 * 250.49108 * 4 3 2 7 7 C 1.53952 * 87.29627 * 220.79276 * 6 4 3 8 8 H 1.08998 * 113.65840 * 139.29933 * 7 6 4 9 9 N 1.46498 * 113.65985 * 270.26239 * 7 6 4 10 10 C 1.34783 * 119.99907 * 253.98319 * 9 7 6 11 11 O 1.21343 * 119.99770 * 0.02562 * 10 9 7 12 12 C 1.49444 * 119.99829 * 180.02562 * 10 9 7 13 13 O 1.21353 * 120.00395 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99750 * 179.72509 * 12 10 9 15 15 C 1.46504 * 119.99858 * 180.27542 * 14 12 10 16 16 C 1.53004 * 109.46932 * 180.02562 * 15 14 12 17 17 C 1.53000 * 109.46992 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46983 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00145 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99703 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00258 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47515 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47139 * 120.00326 * 22 20 18 25 25 H 1.48502 * 109.47343 * 240.00535 * 22 20 18 26 26 C 1.52909 * 86.88438 * 24.78058 * 7 6 4 27 27 C 1.52908 * 121.14180 * 209.33879 * 26 7 6 28 28 C 1.53959 * 86.78248 * 209.37596 * 27 26 7 29 29 C 1.52905 * 121.14029 * 100.76712 * 26 7 6 30 30 H 1.08996 * 109.46710 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47053 * 300.00211 * 1 2 3 32 32 H 1.08998 * 109.46764 * 60.00916 * 1 2 3 33 33 H 1.09000 * 109.47548 * 239.99684 * 2 1 3 34 34 H 1.09003 * 109.47217 * 119.99110 * 2 1 3 35 35 H 1.09002 * 113.58020 * 106.19031 * 6 4 3 36 36 H 1.09000 * 113.64660 * 335.40947 * 6 4 3 37 37 H 0.97000 * 120.00381 * 73.98593 * 9 7 6 38 38 H 0.97000 * 120.00317 * 0.28447 * 14 12 10 39 39 H 1.08992 * 109.47142 * 300.00148 * 15 14 12 40 40 H 1.08997 * 109.46860 * 60.00391 * 15 14 12 41 41 H 1.08998 * 109.47524 * 300.00356 * 16 15 14 42 42 H 1.09005 * 109.46510 * 60.00408 * 16 15 14 43 43 H 1.08998 * 109.47307 * 300.00526 * 17 16 15 44 44 H 1.08997 * 109.46799 * 60.00313 * 17 16 15 45 45 H 0.97003 * 120.00173 * 179.97438 * 21 20 18 46 46 H 1.09005 * 113.65495 * 323.84398 * 27 26 7 47 47 H 1.08989 * 113.66975 * 94.90168 * 27 26 7 48 48 H 1.08998 * 113.57259 * 270.12876 * 28 27 26 49 49 H 1.08993 * 113.65159 * 139.34684 * 28 27 26 50 50 H 1.08996 * 113.66435 * 265.10147 * 29 26 7 51 51 H 1.09003 * 113.66343 * 36.15604 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9272 0.5644 -0.3726 6 6 4.0090 1.9786 1.3299 7 6 4.9826 2.8268 0.4915 8 1 5.1369 3.8318 0.8841 9 7 6.2373 2.1402 0.1743 10 6 7.3747 2.4877 0.8084 11 8 7.3593 3.3690 1.6424 12 6 8.6547 1.7877 0.4844 13 8 8.6701 0.9066 -0.3499 14 7 9.7931 2.1390 1.1146 15 6 11.0490 1.4569 0.7926 16 6 12.1791 2.0410 1.6428 17 6 13.4906 1.3282 1.3070 18 6 14.6035 1.9031 2.1448 19 1 14.3961 2.6971 2.8469 20 6 15.8866 1.4154 2.0151 21 7 16.1393 0.4488 1.1599 22 14 17.2659 2.1275 3.0541 23 1 16.7239 3.1958 3.9317 24 1 17.8601 1.0541 3.8909 25 1 18.3105 2.6983 2.1662 26 6 3.9452 2.7585 -0.6298 27 6 4.3641 2.8147 -2.0992 28 6 2.9953 3.4633 -2.3747 29 6 3.0031 3.9302 -0.9078 30 1 -0.3632 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 4.5014 1.2069 1.9217 36 1 3.3036 2.5719 1.9117 37 1 6.2495 1.4354 -0.4921 38 1 9.7809 2.8434 1.7813 39 1 10.9488 0.3924 1.0039 40 1 11.2785 1.5977 -0.2636 41 1 12.2794 3.1057 1.4319 42 1 11.9493 1.8998 2.6989 43 1 13.3899 0.2636 1.5182 44 1 13.7205 1.4689 0.2509 45 1 17.0421 0.1059 1.0683 46 1 5.2084 3.4779 -2.2883 47 1 4.4835 1.8334 -2.5581 48 1 2.2087 2.7427 -2.5988 49 1 3.0359 4.2819 -3.0932 50 1 2.0352 3.8399 -0.4148 51 1 3.4647 4.9069 -0.7620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343301266.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:33 Heat of formation + Delta-G solvation = -110.304968 kcal Electronic energy + Delta-G solvation = -28901.349721 eV Core-core repulsion = 24800.915759 eV Total energy + Delta-G solvation = -4100.433962 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31828 -41.30277 -39.53049 -38.15894 -37.21954 -36.36486 -35.24151 -33.76376 -33.04076 -31.69555 -29.03637 -26.94123 -26.70781 -25.67842 -25.23919 -23.99663 -23.58878 -22.37542 -21.89742 -21.30216 -19.99392 -19.00703 -18.47714 -18.16901 -17.60682 -17.23078 -16.94302 -16.68749 -16.64558 -16.42353 -16.21401 -16.08321 -15.59824 -15.11772 -14.91281 -14.30498 -14.21269 -14.09134 -13.79295 -13.77002 -13.69972 -13.51085 -13.28832 -13.04263 -12.94566 -12.78808 -12.78289 -12.55333 -12.40972 -12.37450 -12.15496 -11.94529 -11.70656 -11.56904 -11.40301 -11.34896 -11.22021 -11.10236 -10.73526 -10.55418 -10.33238 -10.30727 -10.21104 -8.19691 -6.30431 0.26107 1.19641 1.41680 1.42434 1.55264 2.05727 2.41039 2.51562 2.68665 3.14437 3.23115 3.33590 3.40804 3.65243 3.70220 3.78405 3.94013 4.07782 4.18020 4.19092 4.21644 4.35290 4.41549 4.51059 4.52063 4.52353 4.70577 4.72467 4.84156 4.86020 4.86477 4.89996 4.91419 4.95726 5.05587 5.08015 5.14610 5.15056 5.21340 5.26789 5.31013 5.37628 5.51843 5.52626 5.70777 5.84513 5.85927 6.22662 6.28621 6.30830 6.66416 6.86587 6.87381 7.39045 8.92327 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026464 B = 0.001626 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.791894 B =17212.220731 C =17429.330824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 O -0.379 6.379 4 C 0.091 3.909 5 H 0.097 0.903 6 C -0.161 4.161 7 C 0.128 3.872 8 H 0.105 0.895 9 N -0.670 5.670 10 C 0.519 3.481 11 O -0.536 6.536 12 C 0.502 3.498 13 O -0.546 6.546 14 N -0.686 5.686 15 C 0.127 3.873 16 C -0.106 4.106 17 C 0.024 3.976 18 C -0.542 4.542 19 H 0.064 0.936 20 C -0.001 4.001 21 N -0.933 5.933 22 Si 0.965 3.035 23 H -0.261 1.261 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.104 4.104 27 C -0.129 4.129 28 C -0.129 4.129 29 C -0.101 4.101 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.418 0.582 38 H 0.419 0.581 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.067 0.933 43 H -0.003 1.003 44 H -0.003 1.003 45 H 0.263 0.737 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.323 3.237 -4.601 34.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.298 6.298 4 C 0.033 3.967 5 H 0.114 0.886 6 C -0.200 4.200 7 C 0.023 3.977 8 H 0.123 0.877 9 N -0.321 5.321 10 C 0.300 3.700 11 O -0.413 6.413 12 C 0.283 3.717 13 O -0.424 6.424 14 N -0.338 5.338 15 C 0.004 3.996 16 C -0.144 4.144 17 C -0.014 4.014 18 C -0.580 4.580 19 H 0.082 0.918 20 C -0.199 4.199 21 N -0.573 5.573 22 Si 0.790 3.210 23 H -0.185 1.185 24 H -0.206 1.206 25 H -0.205 1.205 26 C -0.105 4.105 27 C -0.166 4.166 28 C -0.167 4.167 29 C -0.139 4.139 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.256 0.744 38 H 0.257 0.743 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.103 0.897 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -34.310 3.292 -4.656 34.781 hybrid contribution 1.342 -0.314 0.402 1.436 sum -32.968 2.979 -4.254 33.374 Atomic orbital electron populations 1.21740 0.92965 1.03135 1.02721 1.22679 0.96298 0.83280 1.00560 1.87921 1.20107 1.27256 1.94511 1.23456 0.81572 0.96527 0.95112 0.88575 1.23933 0.98146 1.00324 0.97559 1.21715 0.81378 0.97249 0.97387 0.87724 1.45304 1.06325 1.39068 1.41436 1.19944 0.85035 0.83160 0.81866 1.90763 1.86310 1.31199 1.32998 1.20269 0.85523 0.83739 0.82185 1.90754 1.86525 1.31728 1.33421 1.45886 1.07230 1.39185 1.41493 1.21485 0.81539 0.96616 0.99933 1.21645 0.93329 1.00235 0.99211 1.18942 0.91881 0.94923 0.95615 1.21714 0.93998 1.19775 1.22526 0.91791 1.25968 1.01777 0.95375 0.96756 1.70103 1.21467 1.28378 1.37335 0.85396 0.78611 0.78464 0.78545 1.18478 1.20560 1.20541 1.23260 0.95657 0.97341 0.94213 1.22755 0.98235 1.01924 0.93699 1.22743 0.96883 1.00610 0.96443 1.22471 0.98843 0.95861 0.96685 0.89714 0.92317 0.92105 0.92698 0.93109 0.90900 0.87718 0.74409 0.74323 0.91671 0.91643 0.91452 0.91474 0.98485 0.98469 0.92809 0.89732 0.90778 0.90039 0.90705 0.90493 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 71.98 0.74 -0.53 16 2 C 0.05 0.51 6.51 71.98 0.47 0.98 16 3 O -0.38 -5.35 9.55 -148.98 -1.42 -6.77 16 4 C 0.09 1.19 4.10 30.99 0.13 1.32 16 5 H 0.10 1.12 7.90 -2.39 -0.02 1.10 16 6 C -0.16 -2.33 7.72 31.23 0.24 -2.09 16 7 C 0.13 2.05 4.09 45.28 0.19 2.23 16 8 H 0.10 1.92 7.50 -2.39 -0.02 1.90 16 9 N -0.67 -12.47 5.05 -442.49 -2.24 -14.71 16 10 C 0.52 12.75 7.89 87.27 0.69 13.44 16 11 O -0.54 -15.14 16.10 -3.23 -0.05 -15.19 16 12 C 0.50 14.23 7.89 87.27 0.69 14.92 16 13 O -0.55 -17.67 16.48 -3.26 -0.05 -17.72 16 14 N -0.69 -19.60 5.55 -464.41 -2.58 -22.18 16 15 C 0.13 4.27 5.67 86.38 0.49 4.76 16 16 C -0.11 -4.05 5.27 30.60 0.16 -3.88 16 17 C 0.02 1.23 4.97 29.85 0.15 1.37 16 18 C -0.54 -30.11 9.11 25.60 0.23 -29.87 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 20 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 21 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 22 Si 0.97 43.76 29.54 68.60 2.03 45.78 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 26 C -0.10 -1.35 0.93 -52.21 -0.05 -1.40 16 27 C -0.13 -1.58 7.46 30.89 0.23 -1.35 16 28 C -0.13 -1.45 8.08 31.23 0.25 -1.20 16 29 C -0.10 -1.22 7.56 30.88 0.23 -0.99 16 30 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.42 7.00 8.05 -92.71 -0.75 6.25 16 38 H 0.42 10.77 7.94 -92.71 -0.74 10.03 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.08 1.01 7.66 -2.39 -0.02 0.99 16 51 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -66.89 421.53 0.71 -66.18 By element: Atomic # 1 Polarization: 22.98 SS G_CDS: -0.56 Total: 22.42 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.30 Total: -1.86 kcal Atomic # 7 Polarization: -88.30 SS G_CDS: -4.53 Total: -92.83 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -1.53 Total: -39.69 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -66.89 0.71 -66.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343301266.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.123 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds