Wall clock time and date at job start Tue Mar 31 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42902 * 109.46813 * 2 1 4 4 C 1.42904 * 113.99847 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.94770 * 338.10173 * 4 3 2 6 6 C 1.53951 * 113.66292 * 109.50494 * 4 3 2 7 7 C 1.53953 * 87.28982 * 89.73968 * 6 4 3 8 8 H 1.08999 * 113.66260 * 139.30074 * 7 6 4 9 9 N 1.46505 * 113.66275 * 270.26262 * 7 6 4 10 10 C 1.34777 * 119.99724 * 253.99212 * 9 7 6 11 11 O 1.21353 * 120.00416 * 359.97438 * 10 9 7 12 12 C 1.49452 * 119.99621 * 180.02562 * 10 9 7 13 13 O 1.21343 * 119.99953 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99622 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99665 * 179.72283 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 C 1.52997 * 109.47000 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46940 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47135 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47080 * 119.99899 * 22 20 18 25 25 H 1.48502 * 109.47342 * 239.99982 * 22 20 18 26 26 C 1.52905 * 86.88458 * 24.78030 * 7 6 4 27 27 C 1.52911 * 121.14043 * 209.32617 * 26 7 6 28 28 C 1.53953 * 86.78548 * 209.38120 * 27 26 7 29 29 C 1.52919 * 121.13668 * 100.77031 * 26 7 6 30 30 H 1.08999 * 109.47141 * 59.99089 * 1 2 3 31 31 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46345 * 299.99702 * 1 2 3 33 33 H 1.08998 * 109.46958 * 240.00706 * 2 1 3 34 34 H 1.08993 * 109.47045 * 120.00204 * 2 1 3 35 35 H 1.09003 * 113.57769 * 335.14063 * 6 4 3 36 36 H 1.09000 * 113.58006 * 204.33970 * 6 4 3 37 37 H 0.96990 * 119.99784 * 73.98784 * 9 7 6 38 38 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 39 39 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 40 40 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 41 41 H 1.08995 * 109.46638 * 300.00121 * 16 15 14 42 42 H 1.09006 * 109.47139 * 60.00254 * 16 15 14 43 43 H 1.08995 * 109.47672 * 299.99669 * 17 16 15 44 44 H 1.09007 * 109.47288 * 60.00489 * 17 16 15 45 45 H 0.97000 * 120.00572 * 179.97438 * 21 20 18 46 46 H 1.08995 * 113.66350 * 323.85908 * 27 26 7 47 47 H 1.09002 * 113.65739 * 94.90909 * 27 26 7 48 48 H 1.09001 * 113.57797 * 270.13602 * 28 27 26 49 49 H 1.08999 * 113.64954 * 139.35253 * 28 27 26 50 50 H 1.08998 * 113.65491 * 265.09541 * 29 26 7 51 51 H 1.09003 * 113.66055 * 36.05564 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9283 0.5653 0.3734 6 6 4.0091 1.9785 -1.3299 7 6 3.8611 3.3994 -0.7560 8 1 4.7013 4.0542 -0.9868 9 7 2.5631 4.0162 -1.0407 10 6 2.4693 4.9924 -1.9653 11 8 3.4599 5.3607 -2.5616 12 6 1.1452 5.6221 -2.2553 13 8 0.1547 5.2541 -1.6587 14 7 1.0515 6.5986 -3.1795 15 6 -0.2474 7.2116 -3.4682 16 6 -0.0783 8.2785 -4.5517 17 6 -1.4349 8.9183 -4.8536 18 6 -1.2682 9.9696 -5.9203 19 1 -0.2924 10.1619 -6.3412 20 6 -2.3615 10.6860 -6.3591 21 7 -3.5498 10.4522 -5.8463 22 14 -2.1550 11.9887 -7.6819 23 1 -0.7291 12.0572 -8.0909 24 1 -2.9905 11.6365 -8.8581 25 1 -2.5815 13.3075 -7.1488 26 6 3.9451 2.7584 0.6297 27 6 3.2448 3.3864 1.8353 28 6 4.3602 2.7664 2.6966 29 6 5.2440 2.7860 1.4362 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3667 1.7863 -2.1893 36 1 5.0444 1.6827 -1.5000 37 1 1.7714 3.7221 -0.5639 38 1 1.8433 6.8925 -3.6567 39 1 -0.9409 6.4463 -3.8170 40 1 -0.6408 7.6728 -2.5624 41 1 0.6152 9.0437 -4.2029 42 1 0.3151 7.8173 -5.4576 43 1 -2.1280 8.1529 -5.2025 44 1 -1.8288 9.3795 -3.9478 45 1 -4.3189 10.9564 -6.1546 46 1 3.2530 4.4763 1.8271 47 1 2.2570 2.9703 2.0330 48 1 4.1294 1.7620 3.0517 49 1 4.7168 3.4238 3.4895 50 1 5.8532 1.8903 1.3151 51 1 5.8149 3.7066 1.3147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343301269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:37 Heat of formation + Delta-G solvation = -87.947352 kcal Electronic energy + Delta-G solvation = -29371.088208 eV Core-core repulsion = 25271.623745 eV Total energy + Delta-G solvation = -4099.464464 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55045 -40.18082 -38.28927 -37.67145 -35.80257 -35.28561 -33.39348 -32.82143 -31.21358 -31.10975 -27.33642 -26.24236 -25.70107 -25.03256 -24.00842 -23.16417 -22.49577 -21.13750 -20.70812 -20.07368 -19.02658 -18.18071 -17.00118 -16.79160 -16.35568 -16.25340 -16.06793 -15.89719 -15.71087 -15.31682 -14.82371 -14.62433 -14.41885 -14.02215 -13.78977 -13.59699 -13.36511 -13.12533 -12.94749 -12.73866 -12.39013 -12.30574 -12.24442 -11.94576 -11.86180 -11.76482 -11.65709 -11.49680 -11.42902 -10.91910 -10.80877 -10.73635 -10.66323 -10.56745 -10.47169 -9.88271 -9.78410 -9.72666 -9.33700 -9.26050 -9.09911 -8.92299 -8.37102 -6.01581 -4.04398 1.49400 2.35061 3.00349 3.28834 3.30996 3.38515 3.42562 3.69479 3.98880 4.08161 4.26284 4.30548 4.39903 4.45141 4.47596 4.59831 4.70245 4.70735 4.90342 4.97814 4.98874 5.14570 5.23046 5.33441 5.34423 5.36409 5.42446 5.47622 5.50778 5.56615 5.60189 5.63242 5.72645 5.72858 5.82720 5.89992 6.01233 6.11420 6.21450 6.32591 6.57026 6.73672 6.83590 6.97614 7.07841 7.51584 7.63643 7.75301 7.83269 7.97135 8.12687 8.38475 9.02389 9.59900 11.09744 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.001869 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.984156 B =14976.510039 C =15663.037204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.090 3.910 5 H 0.076 0.924 6 C -0.172 4.172 7 C 0.139 3.861 8 H 0.105 0.895 9 N -0.676 5.676 10 C 0.510 3.490 11 O -0.524 6.524 12 C 0.500 3.500 13 O -0.524 6.524 14 N -0.692 5.692 15 C 0.114 3.886 16 C -0.122 4.122 17 C 0.024 3.976 18 C -0.521 4.521 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.139 4.139 29 C -0.104 4.104 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.419 0.581 38 H 0.411 0.589 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.260 0.740 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.527 -23.536 17.319 34.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.281 6.281 4 C 0.032 3.968 5 H 0.094 0.906 6 C -0.211 4.211 7 C 0.033 3.967 8 H 0.123 0.877 9 N -0.328 5.328 10 C 0.291 3.709 11 O -0.400 6.400 12 C 0.280 3.720 13 O -0.400 6.400 14 N -0.344 5.344 15 C -0.008 4.008 16 C -0.160 4.160 17 C -0.014 4.014 18 C -0.559 4.559 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.117 4.117 27 C -0.159 4.159 28 C -0.177 4.177 29 C -0.142 4.142 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.257 0.743 38 H 0.246 0.754 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.104 0.896 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 17.179 -23.300 17.293 33.720 hybrid contribution 0.121 0.447 -0.838 0.958 sum 17.300 -22.852 16.455 33.050 Atomic orbital electron populations 1.21763 0.93357 1.02337 1.03636 1.22531 0.95810 0.83310 0.99935 1.87852 1.19041 1.26754 1.94430 1.22783 0.82075 0.96387 0.95566 0.90592 1.23973 1.02181 0.96607 0.98328 1.21660 0.86500 0.93855 0.94652 0.87669 1.45311 1.11483 1.36317 1.39721 1.20361 0.89603 0.80486 0.80446 1.90745 1.37895 1.62133 1.49233 1.20002 0.88813 0.81586 0.81632 1.90763 1.37635 1.61959 1.49660 1.46058 1.13366 1.36226 1.38780 1.21832 0.82593 0.96323 1.00057 1.21924 1.02438 0.95878 0.95805 1.19039 0.89917 0.95423 0.97002 1.21243 0.94258 1.19389 1.21056 0.92516 1.25033 0.95313 0.97371 0.96821 1.69973 0.99068 1.41393 1.42880 0.86518 0.78184 0.81521 0.81662 1.19726 1.21017 1.21006 1.23224 0.99098 0.96015 0.93334 1.22576 0.98774 1.00474 0.94039 1.22840 0.96957 1.01349 0.96530 1.22583 0.94130 1.02882 0.94587 0.91472 0.91081 0.91672 0.93344 0.93394 0.90017 0.88121 0.74295 0.75363 0.91150 0.91125 0.92436 0.92455 0.96193 0.96187 0.92989 0.89642 0.90396 0.90268 0.91137 0.90925 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.41 6.51 37.16 0.24 0.65 16 3 O -0.36 -3.13 8.73 -35.23 -0.31 -3.43 16 4 C 0.09 0.64 4.16 -26.13 -0.11 0.53 16 5 H 0.08 0.42 7.90 -51.93 -0.41 0.01 16 6 C -0.17 -1.34 7.72 -25.74 -0.20 -1.54 16 7 C 0.14 1.29 4.09 -67.48 -0.28 1.02 16 8 H 0.11 1.05 7.50 -51.93 -0.39 0.66 16 9 N -0.68 -7.83 4.94 -53.80 -0.27 -8.09 16 10 C 0.51 7.19 7.89 -11.58 -0.09 7.09 16 11 O -0.52 -8.17 16.10 5.49 0.09 -8.08 16 12 C 0.50 7.90 7.89 -11.58 -0.09 7.81 16 13 O -0.52 -9.37 16.48 5.50 0.09 -9.27 16 14 N -0.69 -10.82 5.55 -60.73 -0.34 -11.16 16 15 C 0.11 2.01 5.67 -4.04 -0.02 1.99 16 16 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 17 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 19 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 22 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.12 -0.83 0.84 -154.56 -0.13 -0.96 16 27 C -0.12 -0.90 7.34 -26.28 -0.19 -1.09 16 28 C -0.14 -0.78 8.08 -25.75 -0.21 -0.99 16 29 C -0.10 -0.56 7.84 -26.28 -0.21 -0.77 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.42 4.97 7.07 -40.82 -0.29 4.68 16 38 H 0.41 5.87 7.94 -40.82 -0.32 5.55 16 39 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 0.64 7.84 -51.93 -0.41 0.24 16 48 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 419.94 15.07 6.33 6.33 Total: -1.00 -32.22 419.94 -9.25 -41.47 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.97 Total: 4.18 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -1.59 Total: -2.44 kcal Atomic # 7 Polarization: -45.50 SS G_CDS: 0.13 Total: -45.37 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.13 Total: -20.79 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.22 -9.25 -41.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343301269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.473 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds