Wall clock time and date at job start Tue Mar 31 2020 21:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.42902 * 109.46813 * 2 1 4 4 C 1.42904 * 113.99847 * 180.02562 * 3 2 1 5 5 H 1.09001 * 112.94770 * 338.10173 * 4 3 2 6 6 C 1.53951 * 113.66292 * 109.50494 * 4 3 2 7 7 C 1.53953 * 87.28982 * 89.73968 * 6 4 3 8 8 H 1.08999 * 113.66260 * 139.30074 * 7 6 4 9 9 N 1.46505 * 113.66275 * 270.26262 * 7 6 4 10 10 C 1.34777 * 119.99724 * 253.99212 * 9 7 6 11 11 O 1.21353 * 120.00416 * 359.97438 * 10 9 7 12 12 C 1.49452 * 119.99621 * 180.02562 * 10 9 7 13 13 O 1.21343 * 119.99953 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99622 * 179.97438 * 12 10 9 15 15 C 1.46499 * 119.99665 * 179.72283 * 14 12 10 16 16 C 1.53004 * 109.47198 * 180.27868 * 15 14 12 17 17 C 1.52997 * 109.47000 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.46940 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00043 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00213 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00116 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00201 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47135 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47080 * 119.99899 * 22 20 18 25 25 H 1.48502 * 109.47342 * 239.99982 * 22 20 18 26 26 C 1.52905 * 86.88458 * 24.78030 * 7 6 4 27 27 C 1.52911 * 121.14043 * 209.32617 * 26 7 6 28 28 C 1.53953 * 86.78548 * 209.38120 * 27 26 7 29 29 C 1.52919 * 121.13668 * 100.77031 * 26 7 6 30 30 H 1.08999 * 109.47141 * 59.99089 * 1 2 3 31 31 H 1.09000 * 109.46832 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46345 * 299.99702 * 1 2 3 33 33 H 1.08998 * 109.46958 * 240.00706 * 2 1 3 34 34 H 1.08993 * 109.47045 * 120.00204 * 2 1 3 35 35 H 1.09003 * 113.57769 * 335.14063 * 6 4 3 36 36 H 1.09000 * 113.58006 * 204.33970 * 6 4 3 37 37 H 0.96990 * 119.99784 * 73.98784 * 9 7 6 38 38 H 0.97001 * 120.00485 * 0.02562 * 14 12 10 39 39 H 1.09009 * 109.47454 * 300.27637 * 15 14 12 40 40 H 1.08998 * 109.47492 * 60.27932 * 15 14 12 41 41 H 1.08995 * 109.46638 * 300.00121 * 16 15 14 42 42 H 1.09006 * 109.47139 * 60.00254 * 16 15 14 43 43 H 1.08995 * 109.47672 * 299.99669 * 17 16 15 44 44 H 1.09007 * 109.47288 * 60.00489 * 17 16 15 45 45 H 0.97000 * 120.00572 * 179.97438 * 21 20 18 46 46 H 1.08995 * 113.66350 * 323.85908 * 27 26 7 47 47 H 1.09002 * 113.65739 * 94.90909 * 27 26 7 48 48 H 1.09001 * 113.57797 * 270.13602 * 28 27 26 49 49 H 1.08999 * 113.64954 * 139.35253 * 28 27 26 50 50 H 1.08998 * 113.65491 * 265.09541 * 29 26 7 51 51 H 1.09003 * 113.66055 * 36.05564 * 29 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9283 0.5653 0.3734 6 6 4.0091 1.9785 -1.3299 7 6 3.8611 3.3994 -0.7560 8 1 4.7013 4.0542 -0.9868 9 7 2.5631 4.0162 -1.0407 10 6 2.4693 4.9924 -1.9653 11 8 3.4599 5.3607 -2.5616 12 6 1.1452 5.6221 -2.2553 13 8 0.1547 5.2541 -1.6587 14 7 1.0515 6.5986 -3.1795 15 6 -0.2474 7.2116 -3.4682 16 6 -0.0783 8.2785 -4.5517 17 6 -1.4349 8.9183 -4.8536 18 6 -1.2682 9.9696 -5.9203 19 1 -0.2924 10.1619 -6.3412 20 6 -2.3615 10.6860 -6.3591 21 7 -3.5498 10.4522 -5.8463 22 14 -2.1550 11.9887 -7.6819 23 1 -0.7291 12.0572 -8.0909 24 1 -2.9905 11.6365 -8.8581 25 1 -2.5815 13.3075 -7.1488 26 6 3.9451 2.7584 0.6297 27 6 3.2448 3.3864 1.8353 28 6 4.3602 2.7664 2.6966 29 6 5.2440 2.7860 1.4362 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3667 1.7863 -2.1893 36 1 5.0444 1.6827 -1.5000 37 1 1.7714 3.7221 -0.5639 38 1 1.8433 6.8925 -3.6567 39 1 -0.9409 6.4463 -3.8170 40 1 -0.6408 7.6728 -2.5624 41 1 0.6152 9.0437 -4.2029 42 1 0.3151 7.8173 -5.4576 43 1 -2.1280 8.1529 -5.2025 44 1 -1.8288 9.3795 -3.9478 45 1 -4.3189 10.9564 -6.1546 46 1 3.2530 4.4763 1.8271 47 1 2.2570 2.9703 2.0330 48 1 4.1294 1.7620 3.0517 49 1 4.7168 3.4238 3.4895 50 1 5.8532 1.8903 1.3151 51 1 5.8149 3.7066 1.3147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343301269.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:36 Heat of formation + Delta-G solvation = -108.990062 kcal Electronic energy + Delta-G solvation = -29372.000689 eV Core-core repulsion = 25271.623745 eV Total energy + Delta-G solvation = -4100.376944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29525 -41.29117 -39.49077 -38.22259 -37.21641 -36.21235 -35.23804 -33.73319 -33.04379 -31.68330 -29.05056 -27.08421 -26.52584 -25.65466 -25.26580 -23.98105 -23.61349 -22.38480 -21.83612 -21.24661 -19.96956 -19.09044 -18.49939 -17.98824 -17.49704 -17.20422 -16.88000 -16.74476 -16.66387 -16.44927 -16.19400 -16.04828 -15.66241 -15.10383 -14.87509 -14.53126 -14.29100 -14.02681 -13.83109 -13.78352 -13.54676 -13.50299 -13.24921 -12.97011 -12.92015 -12.79025 -12.72455 -12.55788 -12.47561 -12.37907 -12.13025 -11.96156 -11.71641 -11.57386 -11.36934 -11.23400 -11.19876 -11.06935 -10.69344 -10.56127 -10.35978 -10.32469 -10.12585 -8.20049 -6.30958 0.27680 1.23826 1.41388 1.41752 1.55005 2.07023 2.35862 2.42265 2.69936 3.13782 3.30552 3.40749 3.52584 3.71966 3.77667 3.81077 3.96744 4.06918 4.16534 4.19991 4.21888 4.37824 4.43733 4.51052 4.51079 4.60061 4.65750 4.76961 4.84877 4.86361 4.90024 4.90117 4.90770 4.95907 5.04149 5.10441 5.13606 5.13811 5.21064 5.27984 5.33265 5.37764 5.51043 5.52396 5.69706 5.83764 5.90530 6.22272 6.29547 6.36935 6.69561 6.86055 6.89606 7.38361 8.92117 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.001869 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.984156 B =14976.510039 C =15663.037204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 O -0.385 6.385 4 C 0.092 3.908 5 H 0.100 0.900 6 C -0.166 4.166 7 C 0.122 3.878 8 H 0.099 0.901 9 N -0.663 5.663 10 C 0.515 3.485 11 O -0.541 6.541 12 C 0.500 3.500 13 O -0.547 6.547 14 N -0.685 5.685 15 C 0.127 3.873 16 C -0.105 4.105 17 C 0.025 3.975 18 C -0.541 4.541 19 H 0.064 0.936 20 C -0.003 4.003 21 N -0.933 5.933 22 Si 0.967 3.033 23 H -0.260 1.260 24 H -0.279 1.279 25 H -0.279 1.279 26 C -0.110 4.110 27 C -0.130 4.130 28 C -0.132 4.132 29 C -0.096 4.096 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.124 0.876 37 H 0.418 0.582 38 H 0.419 0.581 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.067 0.933 43 H -0.004 1.004 44 H -0.004 1.004 45 H 0.263 0.737 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.878 -24.571 17.563 36.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.019 4.019 3 O -0.304 6.304 4 C 0.034 3.966 5 H 0.118 0.882 6 C -0.205 4.205 7 C 0.017 3.983 8 H 0.117 0.883 9 N -0.314 5.314 10 C 0.295 3.705 11 O -0.418 6.418 12 C 0.281 3.719 13 O -0.425 6.425 14 N -0.338 5.338 15 C 0.004 3.996 16 C -0.143 4.143 17 C -0.013 4.013 18 C -0.579 4.579 19 H 0.082 0.918 20 C -0.201 4.201 21 N -0.574 5.574 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.205 1.205 25 H -0.205 1.205 26 C -0.111 4.111 27 C -0.167 4.167 28 C -0.169 4.169 29 C -0.133 4.133 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.143 0.857 37 H 0.256 0.744 38 H 0.257 0.743 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.015 0.985 44 H 0.015 0.985 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.111 0.889 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 19.566 -24.361 17.553 35.839 hybrid contribution -0.648 0.726 -0.861 1.300 sum 18.918 -23.635 16.692 34.571 Atomic orbital electron populations 1.21779 0.93843 1.03146 1.02313 1.22648 0.95484 0.82714 1.01034 1.87834 1.20073 1.28027 1.94511 1.22846 0.81582 0.97214 0.94921 0.88175 1.24002 1.03313 0.95175 0.98009 1.21984 0.84824 0.94504 0.96986 0.88312 1.45355 1.12571 1.35192 1.38329 1.19957 0.88417 0.81049 0.81066 1.90738 1.37900 1.62994 1.50205 1.20345 0.89389 0.81181 0.81000 1.90751 1.38656 1.62653 1.50465 1.45870 1.12837 1.36153 1.38928 1.21486 0.83469 0.95598 0.99035 1.21640 0.99309 0.96410 0.96955 1.18939 0.92385 0.94595 0.95391 1.21700 0.94665 1.19925 1.21569 0.91751 1.26002 0.94962 0.99827 0.99300 1.70105 1.00000 1.42745 1.44518 0.85375 0.78703 0.78346 0.78461 1.18426 1.20526 1.20503 1.23284 1.00399 0.95536 0.91890 1.22584 0.98976 0.99851 0.95305 1.22820 0.95791 1.01691 0.96589 1.22598 0.93409 1.03954 0.93347 0.93368 0.89246 0.92354 0.92754 0.91629 0.91786 0.85744 0.74438 0.74338 0.91830 0.91754 0.91401 0.91450 0.98548 0.98532 0.92781 0.90842 0.91590 0.89353 0.90633 0.88918 0.88809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.99 0.74 -1.26 16 2 C 0.06 0.69 6.51 71.99 0.47 1.15 16 3 O -0.39 -6.30 8.73 -148.98 -1.30 -7.60 16 4 C 0.09 1.13 4.16 30.98 0.13 1.26 16 5 H 0.10 0.76 7.90 -2.39 -0.02 0.74 16 6 C -0.17 -2.32 7.72 31.23 0.24 -2.08 16 7 C 0.12 2.15 4.09 45.28 0.19 2.34 16 8 H 0.10 1.89 7.50 -2.39 -0.02 1.87 16 9 N -0.66 -15.37 4.94 -442.47 -2.19 -17.56 16 10 C 0.51 14.50 7.89 87.27 0.69 15.19 16 11 O -0.54 -16.65 16.10 -3.26 -0.05 -16.70 16 12 C 0.50 15.92 7.89 87.27 0.69 16.61 16 13 O -0.55 -19.93 16.48 -3.23 -0.05 -19.99 16 14 N -0.69 -21.29 5.55 -464.40 -2.58 -23.87 16 15 C 0.13 4.53 5.67 86.38 0.49 5.02 16 16 C -0.11 -4.15 5.27 30.59 0.16 -3.99 16 17 C 0.02 1.28 4.97 29.85 0.15 1.43 16 18 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 19 H 0.06 3.45 7.74 -2.91 -0.02 3.42 16 20 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 21 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 22 Si 0.97 44.29 29.54 68.60 2.03 46.32 16 23 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 26 C -0.11 -1.40 0.84 -52.21 -0.04 -1.44 16 27 C -0.13 -1.83 7.34 30.89 0.23 -1.60 16 28 C -0.13 -1.19 8.08 31.23 0.25 -0.94 16 29 C -0.10 -0.78 7.84 30.89 0.24 -0.53 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 36 H 0.12 1.13 8.14 -2.39 -0.02 1.12 16 37 H 0.42 10.08 7.07 -92.72 -0.66 9.43 16 38 H 0.42 11.68 7.94 -92.71 -0.74 10.94 16 39 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 45 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.07 1.08 7.84 -2.39 -0.02 1.06 16 48 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 51 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -69.82 419.94 0.99 -68.83 By element: Atomic # 1 Polarization: 26.57 SS G_CDS: -0.47 Total: 26.10 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 5.31 Total: 1.20 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -4.48 Total: -98.17 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -1.41 Total: -44.29 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -69.82 0.99 -68.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343301269.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.157 kcal (2) G-P(sol) polarization free energy of solvation -69.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds