Wall clock time and date at job start Tue Mar 31 2020 21:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42896 * 109.47077 * 2 1 4 4 C 1.42901 * 114.00130 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.94635 * 338.09687 * 4 3 2 6 6 C 1.53957 * 113.66237 * 109.50220 * 4 3 2 7 7 C 1.53945 * 87.29527 * 139.20974 * 6 4 3 8 8 H 1.08994 * 113.66328 * 220.79509 * 7 6 4 9 9 N 1.46496 * 113.66561 * 89.82756 * 7 6 4 10 10 C 1.34771 * 119.99960 * 104.50930 * 9 7 6 11 11 O 1.21355 * 120.00173 * 359.97438 * 10 9 7 12 12 C 1.49457 * 120.00111 * 180.02562 * 10 9 7 13 13 O 1.21347 * 119.99934 * 359.97438 * 12 10 9 14 14 N 1.34780 * 119.99903 * 179.97438 * 12 10 9 15 15 C 1.46496 * 119.99633 * 179.97438 * 14 12 10 16 16 C 1.53000 * 109.47315 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.47527 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46996 * 179.97438 * 17 16 15 19 19 H 1.07994 * 120.00380 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99909 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99746 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99835 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47276 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47015 * 120.00310 * 22 20 18 25 25 H 1.48496 * 109.47048 * 239.99866 * 22 20 18 26 26 C 1.52906 * 113.66266 * 206.68494 * 4 3 2 27 27 C 1.52911 * 121.13708 * 94.91042 * 26 4 3 28 28 C 1.53953 * 86.78498 * 209.37459 * 27 26 4 29 29 C 1.52908 * 121.14322 * 346.34926 * 26 4 3 30 30 H 1.08998 * 109.46975 * 300.00546 * 1 2 3 31 31 H 1.09003 * 109.46776 * 60.00771 * 1 2 3 32 32 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47279 * 239.99729 * 2 1 3 34 34 H 1.09003 * 109.46776 * 119.99229 * 2 1 3 35 35 H 1.09004 * 113.57788 * 253.81104 * 6 4 3 36 36 H 1.08997 * 113.58156 * 24.52558 * 6 4 3 37 37 H 0.97002 * 120.00399 * 284.50312 * 9 7 6 38 38 H 0.96997 * 120.00366 * 359.97438 * 14 12 10 39 39 H 1.09005 * 109.46904 * 299.99271 * 15 14 12 40 40 H 1.08995 * 109.47887 * 59.99557 * 15 14 12 41 41 H 1.08999 * 109.46951 * 299.99896 * 16 15 14 42 42 H 1.09004 * 109.46854 * 59.99312 * 16 15 14 43 43 H 1.09005 * 109.46917 * 299.99576 * 17 16 15 44 44 H 1.08992 * 109.47164 * 59.99725 * 17 16 15 45 45 H 0.97005 * 120.00232 * 180.02562 * 21 20 18 46 46 H 1.09001 * 113.66341 * 323.84544 * 27 26 4 47 47 H 1.08996 * 113.66624 * 94.90194 * 27 26 4 48 48 H 1.09002 * 113.58246 * 270.13531 * 28 27 26 49 49 H 1.08997 * 113.65416 * 139.34277 * 28 27 26 50 50 H 1.09003 * 113.66175 * 265.09643 * 29 26 4 51 51 H 1.09005 * 113.66119 * 36.14079 * 29 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9279 0.5654 0.3754 6 6 4.0102 1.9780 -1.3285 7 6 4.9831 2.8264 -0.4896 8 1 5.1365 3.8318 -0.8816 9 7 6.2383 2.1408 -0.1728 10 6 7.3693 2.4687 -0.8283 11 8 7.3478 3.3317 -1.6813 12 6 8.6498 1.7689 -0.5055 13 8 8.6713 0.9056 0.3471 14 7 9.7808 2.0965 -1.1614 15 6 11.0360 1.4108 -0.8446 16 6 12.1570 1.9663 -1.7254 17 6 13.4681 1.2507 -1.3941 18 6 14.5720 1.7974 -2.2621 19 1 14.3596 2.5769 -2.9787 20 6 15.8532 1.3023 -2.1414 21 7 16.1119 0.3534 -1.2685 22 14 17.2214 1.9795 -3.2179 23 1 16.6739 3.0329 -4.1100 24 1 18.2843 2.5616 -2.3596 25 1 17.7938 0.8828 -4.0393 26 6 3.9435 2.7561 0.6296 27 6 4.3599 2.8107 2.0999 28 6 3.9358 4.2905 2.0752 29 6 3.0005 3.9273 0.9075 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 4.5031 1.2061 -1.9195 36 1 3.3041 2.5700 -1.9107 37 1 6.2555 1.4508 0.5088 38 1 9.7636 2.7862 -1.8432 39 1 11.2837 1.5728 0.2045 40 1 10.9237 0.3428 -1.0306 41 1 11.9091 1.8040 -2.7743 42 1 12.2694 3.0345 -1.5397 43 1 13.7158 1.4134 -0.3451 44 1 13.3559 0.1825 -1.5794 45 1 17.0133 0.0053 -1.1832 46 1 3.7451 2.1903 2.7520 47 1 5.4284 2.6645 2.2578 48 1 4.7403 4.9701 1.7943 49 1 3.4076 4.6091 2.9739 50 1 2.9831 4.6730 0.1127 51 1 2.0037 3.6206 1.2244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343301287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:42 Heat of formation + Delta-G solvation = -89.404990 kcal Electronic energy + Delta-G solvation = -28916.559314 eV Core-core repulsion = 24817.031642 eV Total energy + Delta-G solvation = -4099.527671 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.61088 -40.27929 -38.42760 -37.68465 -35.90754 -35.37548 -33.45883 -32.98173 -31.26989 -31.17909 -27.38416 -26.27116 -25.72930 -25.09575 -23.97653 -23.15520 -22.55133 -21.26907 -20.78782 -20.23020 -19.12311 -17.98189 -17.44031 -16.75127 -16.40805 -16.35565 -16.16583 -15.95816 -15.82425 -15.33418 -14.79682 -14.74675 -14.44887 -13.95818 -13.73406 -13.67609 -13.44130 -13.25563 -12.89658 -12.76042 -12.40595 -12.33315 -12.28072 -12.20575 -11.90801 -11.82443 -11.73606 -11.59268 -11.44152 -10.94234 -10.83387 -10.78294 -10.74996 -10.59339 -10.49362 -9.92597 -9.83053 -9.68224 -9.49144 -9.40405 -9.13607 -9.01801 -8.39689 -6.04233 -4.07172 1.35266 2.21086 3.15279 3.20660 3.29246 3.36932 3.40756 3.54966 3.82817 4.01577 4.22502 4.32094 4.34527 4.41947 4.45921 4.46577 4.63592 4.73410 4.84761 4.94331 5.01603 5.09388 5.26628 5.28619 5.31953 5.40871 5.44308 5.45942 5.48978 5.53753 5.56547 5.58914 5.64326 5.66524 5.68272 5.93027 6.01264 6.05478 6.06088 6.23111 6.51759 6.66181 6.84398 6.86564 6.93155 7.35486 7.60265 7.66683 7.71492 7.94091 8.00213 8.35406 8.99558 9.57353 11.07048 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024796 B = 0.001652 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.961281 B =16946.546694 C =17268.207680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.368 6.368 4 C 0.076 3.924 5 H 0.088 0.912 6 C -0.164 4.164 7 C 0.145 3.855 8 H 0.113 0.887 9 N -0.687 5.687 10 C 0.513 3.487 11 O -0.516 6.516 12 C 0.501 3.499 13 O -0.526 6.526 14 N -0.690 5.690 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.110 4.110 27 C -0.129 4.129 28 C -0.141 4.141 29 C -0.097 4.097 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.413 0.587 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.864 2.989 5.287 33.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.287 6.287 4 C 0.018 3.982 5 H 0.106 0.894 6 C -0.203 4.203 7 C 0.040 3.960 8 H 0.131 0.869 9 N -0.340 5.340 10 C 0.294 3.706 11 O -0.390 6.390 12 C 0.280 3.720 13 O -0.403 6.403 14 N -0.342 5.342 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.014 4.014 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.111 4.111 27 C -0.166 4.166 28 C -0.178 4.178 29 C -0.135 4.135 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.250 0.750 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.088 0.912 50 H 0.089 0.911 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -32.802 3.039 5.339 33.372 hybrid contribution 1.045 -0.084 -0.581 1.198 sum -31.757 2.956 4.758 32.247 Atomic orbital electron populations 1.21741 0.93745 1.02265 1.03070 1.22520 0.95599 0.84007 1.00104 1.87928 1.20138 1.26126 1.94511 1.23547 0.81440 0.97169 0.96039 0.89387 1.23966 0.98363 1.00530 0.97450 1.21405 0.81651 0.97727 0.95227 0.86868 1.45361 1.06967 1.40761 1.40897 1.20370 0.85096 0.83246 0.81909 1.90769 1.85987 1.31072 1.31207 1.19959 0.85021 0.83987 0.83028 1.90762 1.85901 1.31634 1.32001 1.46074 1.08302 1.40253 1.39553 1.21857 0.81220 0.96935 1.00835 1.21931 0.95477 1.00574 0.98106 1.19039 0.89310 0.95695 0.97334 1.21241 0.93355 1.20777 1.20723 0.92500 1.25026 0.98850 0.95034 0.95536 1.69970 1.20725 1.27477 1.35096 0.86517 0.82034 0.78903 0.80433 1.19720 1.20996 1.20997 1.23203 0.96591 0.96436 0.94825 1.22740 1.01740 0.97521 0.94595 1.22862 0.99604 0.96422 0.98959 1.22440 0.97766 0.95114 0.98156 0.91908 0.91848 0.91161 0.93352 0.93393 0.90528 0.87981 0.75031 0.75268 0.91044 0.91065 0.92408 0.92402 0.96174 0.96191 0.92973 0.89492 0.90901 0.90080 0.91183 0.91093 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.05 0.34 6.51 37.16 0.24 0.58 16 3 O -0.37 -2.92 9.66 -35.23 -0.34 -3.26 16 4 C 0.08 0.56 4.10 -26.28 -0.11 0.45 16 5 H 0.09 0.60 7.90 -51.93 -0.41 0.19 16 6 C -0.16 -1.30 7.72 -25.75 -0.20 -1.50 16 7 C 0.15 1.25 4.07 -67.48 -0.27 0.97 16 8 H 0.11 1.09 7.54 -51.93 -0.39 0.69 16 9 N -0.69 -6.76 4.86 -53.80 -0.26 -7.03 16 10 C 0.51 6.52 7.89 -11.58 -0.09 6.43 16 11 O -0.52 -7.50 16.12 5.49 0.09 -7.41 16 12 C 0.50 7.27 7.89 -11.58 -0.09 7.18 16 13 O -0.53 -8.66 16.48 5.50 0.09 -8.57 16 14 N -0.69 -10.14 5.55 -60.73 -0.34 -10.48 16 15 C 0.11 1.92 5.67 -4.04 -0.02 1.90 16 16 C -0.12 -2.36 5.27 -26.73 -0.14 -2.51 16 17 C 0.02 0.59 4.97 -27.89 -0.14 0.46 16 18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 22 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 26 C -0.11 -0.79 0.92 -154.71 -0.14 -0.93 16 27 C -0.13 -0.88 7.60 -26.28 -0.20 -1.08 16 28 C -0.14 -0.93 8.08 -25.75 -0.21 -1.13 16 29 C -0.10 -0.65 7.47 -26.28 -0.20 -0.85 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.41 3.71 7.75 -40.82 -0.32 3.40 16 38 H 0.41 5.52 7.94 -40.82 -0.32 5.20 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.54 7.51 -51.93 -0.39 0.15 16 48 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.65 7.84 -51.93 -0.41 0.24 16 LS Contribution 420.78 15.07 6.34 6.34 Total: -1.00 -31.58 420.78 -9.27 -40.85 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.97 Total: 2.67 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.60 Total: -3.70 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.14 Total: -43.32 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.16 Total: -19.24 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -31.58 -9.27 -40.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343301287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.552 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds