Wall clock time and date at job start Tue Mar 31 2020 21:00:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46504 * 109.46873 * 2 1
4 4 C 1.37101 * 120.00111 * 264.46508 * 3 2 1
5 5 H 1.08003 * 119.99497 * 138.40703 * 4 3 2
6 6 C 1.38946 * 120.00001 * 318.40934 * 4 3 2
7 7 N 1.31410 * 120.00189 * 341.72131 * 6 4 3
8 8 Si 1.86802 * 119.99829 * 161.72300 * 6 4 3
9 9 H 1.48502 * 109.46958 * 89.99966 * 8 6 4
10 10 H 1.48496 * 109.47186 * 209.99997 * 8 6 4
11 11 H 1.48494 * 109.47014 * 329.99952 * 8 6 4
12 12 C 1.34774 * 119.99679 * 84.46799 * 3 2 1
13 13 O 1.21299 * 119.99819 * 179.97438 * 12 3 2
14 14 C 1.50697 * 120.00229 * 359.97438 * 12 3 2
15 15 H 1.08999 * 115.60243 * 34.49077 * 14 12 3
16 16 C 1.53272 * 117.53333 * 248.60869 * 14 12 3
17 17 C 1.51688 * 59.74548 * 252.64227 * 16 14 12
18 18 C 1.53934 * 122.31480 * 111.72812 * 17 16 14
19 19 C 1.54565 * 102.74134 * 109.29363 * 18 17 16
20 20 N 1.47108 * 107.37707 * 20.95248 * 19 18 17
21 21 C 1.34772 * 125.58248 * 180.99315 * 20 19 18
22 22 O 1.21513 * 119.99751 * 179.97438 * 21 20 19
23 23 O 1.34638 * 120.00218 * 359.95436 * 21 20 19
24 24 C 1.45202 * 117.00130 * 180.02562 * 23 21 20
25 25 C 1.53006 * 109.46864 * 60.00202 * 24 23 21
26 26 C 1.53000 * 109.46906 * 180.02562 * 24 23 21
27 27 C 1.52998 * 109.47209 * 300.00641 * 24 23 21
28 28 C 1.47676 * 108.83449 * 0.95262 * 20 19 18
29 29 H 1.09002 * 109.46893 * 299.99650 * 1 2 3
30 30 H 1.08991 * 109.47224 * 59.99912 * 1 2 3
31 31 H 1.08998 * 109.46662 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.47305 * 240.00485 * 2 1 3
33 33 H 1.08999 * 109.47828 * 119.99956 * 2 1 3
34 34 H 0.96993 * 120.00040 * 180.02562 * 7 6 4
35 35 H 1.09001 * 117.53270 * 145.21785 * 16 14 12
36 36 H 1.08997 * 117.53865 * 0.06680 * 16 14 12
37 37 H 1.08997 * 110.75943 * 227.60322 * 18 17 16
38 38 H 1.08995 * 110.76124 * 350.97825 * 18 17 16
39 39 H 1.09004 * 109.85807 * 261.50390 * 19 18 17
40 40 H 1.08998 * 109.97844 * 140.47240 * 19 18 17
41 41 H 1.09006 * 109.46586 * 60.00012 * 25 24 23
42 42 H 1.08994 * 109.47040 * 179.97438 * 25 24 23
43 43 H 1.08997 * 109.47291 * 299.99886 * 25 24 23
44 44 H 1.08992 * 109.47363 * 60.00374 * 26 24 23
45 45 H 1.09003 * 109.46762 * 180.02562 * 26 24 23
46 46 H 1.09003 * 109.47198 * 299.99904 * 26 24 23
47 47 H 1.08997 * 109.47445 * 59.99808 * 27 24 23
48 48 H 1.08994 * 109.46950 * 179.97438 * 27 24 23
49 49 H 1.09004 * 109.46513 * 299.99553 * 27 24 23
50 50 H 1.08994 * 110.40139 * 218.51133 * 28 20 19
51 51 H 1.08998 * 110.49734 * 96.14571 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.3547 1.9894 -1.1818
5 1 2.0746 3.0174 -1.3589
6 6 3.0560 1.2833 -2.1515
7 7 3.7044 0.1876 -1.8262
8 14 3.0770 1.8918 -3.9175
9 1 4.2268 2.8116 -4.1105
10 1 3.2092 0.7343 -4.8383
11 1 1.8119 2.6131 -4.2076
12 6 2.1368 2.0541 1.1618
13 8 2.5415 3.1975 1.1619
14 6 1.7665 1.3858 2.4607
15 1 1.9758 0.3176 2.5172
16 6 0.5256 1.9045 3.1959
17 6 1.9124 2.1993 3.7352
18 6 2.5081 3.6187 3.7420
19 6 2.5065 3.9818 5.2444
20 7 2.4463 2.7216 6.0009
21 6 2.4080 2.6142 7.3438
22 8 2.3587 1.5174 7.8644
23 8 2.4248 3.7222 8.1086
24 6 2.3819 3.5309 9.5473
25 6 3.5941 2.7082 9.9887
26 6 2.4081 4.8929 10.2439
27 6 1.0978 2.7898 9.9252
28 6 2.4337 1.5936 5.0479
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5138 -0.8899
31 1 -0.3632 -1.0277 -0.0005
32 1 1.8934 -0.5137 -0.8900
33 1 1.8935 -0.5138 0.8899
34 1 4.1942 -0.3051 -2.5031
35 1 -0.0809 1.1773 3.7358
36 1 -0.0231 2.7282 2.7392
37 1 3.5240 3.6132 3.3471
38 1 1.8770 4.3053 3.1779
39 1 1.6356 4.5950 5.4761
40 1 3.4181 4.5229 5.4977
41 1 4.5090 3.2362 9.7195
42 1 3.5622 2.5650 11.0688
43 1 3.5750 1.7380 9.4925
44 1 1.5444 5.4785 9.9294
45 1 2.3764 4.7492 11.3239
46 1 3.3228 5.4211 9.9747
47 1 1.0787 1.8196 9.4289
48 1 1.0658 2.6459 11.0051
49 1 0.2342 3.3760 9.6107
50 1 1.7626 0.8088 5.3970
51 1 3.4402 1.1986 4.9108
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000363985391.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:00:47
Heat of formation + Delta-G solvation = -79.072741 kcal
Electronic energy + Delta-G solvation = -30577.600087 eV
Core-core repulsion = 26478.520456 eV
Total energy + Delta-G solvation = -4099.079632 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-40.87927 -39.72267 -38.07031 -36.71592 -35.18877 -34.58827 -33.92710 -31.99771
-30.02706 -29.41436 -27.81067 -27.61292 -27.56488 -25.54848 -23.44925 -22.97741
-22.15536 -21.66941 -19.65231 -19.48318 -18.41528 -17.49287 -16.78221 -16.66447
-16.45392 -16.10106 -15.20154 -15.08301 -15.00947 -14.55353 -14.28174 -13.99986
-13.83535 -13.64052 -13.32672 -12.95214 -12.82992 -12.76005 -12.69540 -12.40246
-12.09356 -12.08185 -11.95313 -11.93283 -11.81789 -11.70672 -11.50194 -11.42377
-11.35821 -11.07288 -10.94119 -10.81683 -10.54092 -10.49764 -10.36376 -10.12395
-10.06891 -9.86490 -9.61098 -8.90392 -8.69436 -8.33253 -7.41744 -6.33319
-4.01806 2.03098 2.82653 3.15910 3.24993 3.29559 3.54304 3.85196
4.10140 4.26853 4.42944 4.51889 4.55992 4.70200 4.77743 4.95089
5.01108 5.15499 5.24250 5.25759 5.32078 5.33461 5.36080 5.46873
5.53564 5.58643 5.65714 5.68003 5.76058 5.77948 5.79019 5.84295
5.94029 5.99156 6.03002 6.09982 6.12601 6.23181 6.24048 6.28053
6.38345 6.42104 6.45478 6.54888 6.63161 6.87797 7.22144 7.49995
7.56953 8.29628 8.31613 8.51367 9.18954 9.39479 10.02690 10.71900
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.027486 B = 0.002302 C = 0.002239
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1018.467099 B =12158.058182 C =12502.842694
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.105 3.895
3 N -0.435 5.435
4 C -0.308 4.308
5 H 0.087 0.913
6 C 0.039 3.961
7 N -0.871 5.871
8 Si 0.917 3.083
9 H -0.277 1.277
10 H -0.283 1.283
11 H -0.270 1.270
12 C 0.490 3.510
13 O -0.575 6.575
14 C -0.143 4.143
15 H 0.117 0.883
16 C -0.138 4.138
17 C -0.124 4.124
18 C -0.073 4.073
19 C 0.103 3.897
20 N -0.599 5.599
21 C 0.668 3.332
22 O -0.573 6.573
23 O -0.361 6.361
24 C 0.135 3.865
25 C -0.183 4.183
26 C -0.140 4.140
27 C -0.183 4.183
28 C 0.166 3.834
29 H 0.046 0.954
30 H 0.055 0.945
31 H 0.048 0.952
32 H 0.100 0.900
33 H 0.048 0.952
34 H 0.267 0.733
35 H 0.097 0.903
36 H 0.099 0.901
37 H 0.088 0.912
38 H 0.091 0.909
39 H 0.067 0.933
40 H 0.068 0.932
41 H 0.059 0.941
42 H 0.068 0.932
43 H 0.088 0.912
44 H 0.066 0.934
45 H 0.079 0.921
46 H 0.066 0.934
47 H 0.088 0.912
48 H 0.068 0.932
49 H 0.059 0.941
50 H 0.080 0.920
51 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.763 2.999 18.763 19.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C -0.019 4.019
3 N -0.154 5.154
4 C -0.436 4.436
5 H 0.105 0.895
6 C -0.166 4.166
7 N -0.508 5.508
8 Si 0.743 3.257
9 H -0.203 1.203
10 H -0.209 1.209
11 H -0.194 1.194
12 C 0.278 3.722
13 O -0.458 6.458
14 C -0.165 4.165
15 H 0.135 0.865
16 C -0.176 4.176
17 C -0.126 4.126
18 C -0.110 4.110
19 C -0.020 4.020
20 N -0.340 5.340
21 C 0.423 3.577
22 O -0.463 6.463
23 O -0.276 6.276
24 C 0.098 3.902
25 C -0.240 4.240
26 C -0.197 4.197
27 C -0.240 4.240
28 C 0.045 3.955
29 H 0.065 0.935
30 H 0.074 0.926
31 H 0.067 0.933
32 H 0.118 0.882
33 H 0.067 0.933
34 H 0.077 0.923
35 H 0.116 0.884
36 H 0.118 0.882
37 H 0.107 0.893
38 H 0.110 0.890
39 H 0.085 0.915
40 H 0.086 0.914
41 H 0.078 0.922
42 H 0.087 0.913
43 H 0.107 0.893
44 H 0.085 0.915
45 H 0.098 0.902
46 H 0.085 0.915
47 H 0.107 0.893
48 H 0.087 0.913
49 H 0.078 0.922
50 H 0.099 0.901
51 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -4.449 3.107 18.965 19.726
hybrid contribution 0.100 -0.044 -0.840 0.847
sum -4.349 3.063 18.125 18.890
Atomic orbital electron populations
1.22209 0.98119 1.00291 1.01646 1.21440 0.91685 0.85584 1.03188
1.43364 1.55638 1.11710 1.04667 1.19326 1.34361 0.98779 0.91159
0.89523 1.25428 0.94036 0.96548 1.00543 1.69930 1.28854 1.17843
1.34164 0.86097 0.78958 0.78324 0.82281 1.20282 1.20862 1.19414
1.19364 0.81841 0.87412 0.83592 1.90502 1.50350 1.18564 1.86433
1.22282 1.02747 0.99569 0.91937 0.86498 1.22830 0.89742 1.03112
1.01913 1.21379 1.00473 0.97594 0.93122 1.21952 1.03241 0.94033
0.91812 1.22288 1.01681 0.85512 0.92502 1.47190 1.75275 1.09903
1.01618 1.17454 0.76405 0.82567 0.81286 1.90882 1.56608 1.26839
1.72001 1.86320 1.86696 1.34428 1.20154 1.22051 0.96478 0.96704
0.74961 1.22514 0.96786 1.02498 1.02226 1.21849 1.03396 0.94656
0.99804 1.22511 0.96122 1.02919 1.02440 1.21431 1.01588 0.87396
0.85046 0.93523 0.92594 0.93258 0.88186 0.93334 0.92267 0.88442
0.88228 0.89312 0.89047 0.91482 0.91386 0.92210 0.91271 0.89328
0.91487 0.90239 0.91485 0.89343 0.91278 0.92223 0.90144 0.90400
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.84 10.16 37.16 0.38 -2.47 16
2 C 0.11 2.20 5.41 -4.04 -0.02 2.18 16
3 N -0.44 -10.60 2.50 -114.81 -0.29 -10.89 16
4 C -0.31 -8.30 8.83 -14.93 -0.13 -8.43 16
5 H 0.09 2.43 7.83 -52.48 -0.41 2.02 16
6 C 0.04 1.01 4.94 -17.47 -0.09 0.93 16
7 N -0.87 -23.20 11.66 55.50 0.65 -22.55 16
8 Si 0.92 20.29 29.59 -169.99 -5.03 15.26 16
9 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16
10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
11 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16
12 C 0.49 11.28 7.37 -10.99 -0.08 11.20 16
13 O -0.57 -14.75 13.91 5.54 0.08 -14.67 16
14 C -0.14 -2.51 4.73 -92.19 -0.44 -2.95 16
15 H 0.12 1.91 6.53 -51.93 -0.34 1.57 16
16 C -0.14 -2.02 9.77 -27.26 -0.27 -2.29 16
17 C -0.12 -1.91 2.29 -154.89 -0.35 -2.26 16
18 C -0.07 -1.13 4.87 -25.42 -0.12 -1.25 16
19 C 0.10 1.36 6.90 -2.89 -0.02 1.34 16
20 N -0.60 -8.58 3.34 -176.64 -0.59 -9.17 16
21 C 0.67 9.90 7.92 54.05 0.43 10.33 16
22 O -0.57 -9.33 12.16 -19.28 -0.23 -9.56 16
23 O -0.36 -4.76 9.49 -40.32 -0.38 -5.15 16
24 C 0.13 1.41 1.13 -90.62 -0.10 1.31 16
25 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16
26 C -0.14 -1.06 8.85 37.16 0.33 -0.73 16
27 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16
28 C 0.17 2.36 6.75 -3.04 -0.02 2.34 16
29 H 0.05 0.75 7.39 -51.93 -0.38 0.37 16
30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16
31 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
32 H 0.10 2.33 5.80 -51.93 -0.30 2.03 16
33 H 0.05 0.93 6.25 -51.93 -0.32 0.60 16
34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16
35 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16
36 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16
37 H 0.09 1.54 7.75 -51.93 -0.40 1.14 16
38 H 0.09 1.51 7.63 -51.93 -0.40 1.11 16
39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16
41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
43 H 0.09 1.12 5.88 -51.93 -0.31 0.81 16
44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
45 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
47 H 0.09 1.11 5.88 -51.93 -0.31 0.80 16
48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
49 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
50 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16
51 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16
LS Contribution 401.93 15.07 6.06 6.06
Total: -1.00 -30.68 401.93 -8.27 -38.95
By element:
Atomic # 1 Polarization: 14.18 SS G_CDS: -8.64 Total: 5.54 kcal
Atomic # 6 Polarization: 6.07 SS G_CDS: 0.11 Total: 6.18 kcal
Atomic # 7 Polarization: -42.38 SS G_CDS: -0.23 Total: -42.61 kcal
Atomic # 8 Polarization: -28.84 SS G_CDS: -0.54 Total: -29.38 kcal
Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.26 kcal
Total LS contribution 6.06 Total: 6.06 kcal
Total: -30.68 -8.27 -38.95 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000363985391.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.125 kcal
(2) G-P(sol) polarization free energy of solvation -30.677 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.802 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.948 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.073 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds