Wall clock time and date at job start Tue Mar 31 2020 20:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.50701 * 109.46973 * 89.99870 * 4 3 2 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46973 * 59.99777 * 9 7 5 11 11 H 1.48500 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46756 * 299.99980 * 9 7 5 13 13 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 14 14 O 1.21279 * 119.99753 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00154 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47564 * 180.02562 * 15 13 3 17 17 C 1.47018 * 110.99730 * 293.63880 * 16 15 13 18 18 C 1.53102 * 109.25624 * 177.60456 * 17 16 15 19 19 O 1.43018 * 109.25926 * 56.84549 * 18 17 16 20 20 C 1.43013 * 113.73653 * 301.32796 * 19 18 17 21 21 C 1.47009 * 111.00397 * 169.99981 * 16 15 13 22 22 H 1.08996 * 109.50688 * 62.45978 * 21 16 15 23 23 C 1.52994 * 109.50614 * 302.32715 * 21 16 15 24 24 H 1.09002 * 109.97329 * 59.81952 * 23 21 16 25 25 C 1.54286 * 109.98383 * 181.12986 * 23 21 16 26 26 C 1.54985 * 103.75157 * 142.47380 * 25 23 21 27 27 C 1.54903 * 102.33342 * 322.91409 * 26 25 23 28 28 C 1.51452 * 109.98607 * 298.54497 * 23 21 16 29 29 O 1.20755 * 126.33816 * 60.99244 * 28 23 21 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 36 36 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 37 37 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 38 38 H 1.09001 * 109.47525 * 300.00358 * 15 13 3 39 39 H 1.09002 * 109.47555 * 59.99795 * 15 13 3 40 40 H 1.09003 * 109.50368 * 297.53501 * 17 16 15 41 41 H 1.09002 * 109.50776 * 57.66770 * 17 16 15 42 42 H 1.09003 * 109.50431 * 296.91112 * 18 17 16 43 43 H 1.09000 * 109.53733 * 176.80418 * 18 17 16 44 44 H 1.08994 * 109.51097 * 298.73682 * 20 19 18 45 45 H 1.09002 * 109.53957 * 178.62367 * 20 19 18 46 46 H 1.08995 * 110.56665 * 261.03856 * 25 23 21 47 47 H 1.08998 * 110.56982 * 23.90556 * 25 23 21 48 48 H 1.08995 * 110.83647 * 204.70717 * 26 25 23 49 49 H 1.08995 * 110.83571 * 81.12096 * 26 25 23 50 50 H 1.08995 * 110.44066 * 278.89092 * 27 26 25 51 51 H 1.08994 * 110.54551 * 156.41234 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0068 2.7823 -1.7037 6 1 0.1157 2.7247 -1.0961 7 6 0.9950 3.5048 -2.8778 8 7 2.0799 3.5745 -3.6180 9 14 -0.5619 4.3849 -3.4175 10 1 -0.9546 5.3752 -2.3828 11 1 -0.3147 5.0840 -4.7041 12 1 -1.6541 3.3946 -3.5947 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2060 3.5889 17 6 3.7487 2.5051 3.6318 18 6 4.0259 3.4906 4.7702 19 8 3.5512 2.9362 6.0001 20 6 2.1535 2.6336 5.9936 21 6 1.8573 1.6393 4.8677 22 1 2.3851 0.7051 5.0589 23 6 0.3521 1.3730 4.8041 24 1 0.1318 0.6710 3.9999 25 6 -0.1400 0.8041 6.1512 26 6 -1.5322 1.4583 6.3409 27 6 -1.3098 2.8810 5.7701 28 6 -0.3942 2.6712 4.5770 29 8 -0.2816 3.4039 3.6238 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.0645 2.7984 -1.1383 36 1 2.5506 1.3452 -2.0284 37 1 2.0717 4.0832 -4.4439 38 1 0.9446 1.0113 2.5303 39 1 2.6228 0.4186 2.5299 40 1 4.3068 1.5846 3.8033 41 1 4.0570 2.9473 2.6844 42 1 3.5106 4.4303 4.5716 43 1 5.0983 3.6717 4.8424 44 1 1.5837 3.5483 5.8306 45 1 1.8711 2.1945 6.9505 46 1 -0.2307 -0.2808 6.0984 47 1 0.5327 1.0944 6.9582 48 1 -1.7996 1.5017 7.3966 49 1 -2.2920 0.9256 5.7690 50 1 -0.8283 3.5179 6.5121 51 1 -2.2563 3.3176 5.4514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373689093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:34 Heat of formation + Delta-G solvation = -100.268154 kcal Electronic energy + Delta-G solvation = -32142.082024 eV Core-core repulsion = 28042.083290 eV Total energy + Delta-G solvation = -4099.998734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85911 -39.15746 -38.49610 -36.41151 -35.64335 -34.95150 -32.68544 -31.94239 -29.97383 -29.47577 -28.27346 -27.05892 -26.83732 -24.88909 -23.49841 -22.72093 -22.32429 -21.17167 -20.74926 -18.75834 -18.23561 -17.13855 -16.55350 -16.46640 -16.31766 -15.89604 -15.68752 -15.32187 -15.15796 -14.83738 -14.41410 -14.28870 -14.05078 -13.88983 -13.58197 -13.48452 -13.18252 -13.14879 -12.87938 -12.70790 -12.52544 -12.13180 -12.03063 -11.75945 -11.54182 -11.48935 -11.38128 -11.30684 -11.14700 -11.02727 -11.00635 -10.79191 -10.66874 -10.49670 -10.40167 -9.98957 -9.71516 -9.50255 -9.30649 -8.79895 -8.35887 -8.13386 -7.57625 -5.97307 -4.00486 2.07492 3.36492 3.40847 3.41200 3.48307 3.57258 3.72624 4.01353 4.16751 4.21461 4.45573 4.52097 4.59902 4.72111 4.80687 4.93990 4.99893 5.03150 5.18530 5.21431 5.25121 5.28288 5.33033 5.35656 5.38692 5.48910 5.49517 5.55512 5.56055 5.60242 5.69233 5.70493 5.80213 5.82088 5.85895 5.91668 5.99492 6.08145 6.12151 6.32940 6.77560 6.90770 6.97251 7.11966 7.17193 7.50471 7.64509 7.67481 8.00043 8.31858 8.50537 8.99458 9.21854 9.64151 11.10885 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003791 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.776984 B = 7384.855437 C = 8046.628313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.112 3.888 3 N -0.601 5.601 4 C 0.249 3.751 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.511 3.489 14 O -0.520 6.520 15 C 0.038 3.962 16 N -0.505 5.505 17 C 0.016 3.984 18 C 0.065 3.935 19 O -0.386 6.386 20 C 0.068 3.932 21 C 0.063 3.937 22 H 0.058 0.942 23 C -0.151 4.151 24 H 0.104 0.896 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.187 4.187 28 C 0.362 3.638 29 O -0.396 6.396 30 H 0.076 0.924 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.042 0.958 36 H 0.030 0.970 37 H 0.262 0.738 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.034 0.966 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.100 0.900 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.100 0.900 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -10.060 22.290 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.012 4.012 3 N -0.335 5.335 4 C 0.130 3.870 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 C 0.297 3.703 14 O -0.395 6.395 15 C -0.093 4.093 16 N -0.230 5.230 17 C -0.112 4.112 18 C -0.012 4.012 19 O -0.305 6.305 20 C -0.009 4.009 21 C -0.046 4.046 22 H 0.075 0.925 23 C -0.170 4.170 24 H 0.122 0.878 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.224 4.224 28 C 0.232 3.768 29 O -0.263 6.263 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.130 0.870 42 H 0.081 0.919 43 H 0.116 0.884 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.118 0.882 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.883 -8.531 21.632 23.432 hybrid contribution -0.785 -0.438 -0.576 1.068 sum -3.669 -8.969 21.057 23.180 Atomic orbital electron populations 1.22234 0.96435 1.00701 1.03432 1.21359 0.94519 0.83978 1.01384 1.48260 1.64405 1.13082 1.07715 1.19241 0.97473 0.92346 0.77955 1.21415 0.97528 1.30866 1.05939 0.92402 1.24913 0.96374 0.96282 0.96505 1.69921 1.27486 1.41871 1.14419 0.86612 0.83374 0.80006 0.77764 1.20160 1.21256 1.20344 1.19972 0.78959 0.86901 0.84510 1.90627 1.45212 1.17043 1.86654 1.22112 1.02344 0.93850 0.90976 1.61811 1.16473 1.43936 1.00750 1.22974 0.87303 0.98746 1.02149 1.22705 0.99763 0.96118 0.82608 1.87944 1.23496 1.83268 1.35761 1.22786 0.83020 0.97500 0.97638 1.22162 0.93538 0.97513 0.91433 0.92455 1.22502 0.95272 0.99119 1.00103 0.87811 1.22451 0.96868 1.00655 0.95713 1.22397 0.97144 0.94491 1.01550 1.22966 1.01514 0.99062 0.98897 1.24605 0.80455 0.85653 0.86052 1.90584 1.57880 1.47027 1.30810 0.90458 0.93453 0.92916 0.92461 0.90707 0.94023 0.95223 0.92806 0.88420 0.92952 0.94786 0.87001 0.91868 0.88402 0.92582 0.88186 0.90417 0.90287 0.90342 0.90744 0.88230 0.89187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 37.16 0.38 -2.29 16 2 C 0.11 1.83 5.98 -4.04 -0.02 1.80 16 3 N -0.60 -12.96 2.46 -175.07 -0.43 -13.39 16 4 C 0.25 6.61 5.20 -5.19 -0.03 6.59 16 5 C -0.52 -14.99 8.92 -34.44 -0.31 -15.30 16 6 H 0.06 1.69 7.42 -52.48 -0.39 1.30 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 9 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 10 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.51 10.99 7.38 -10.99 -0.08 10.91 16 14 O -0.52 -13.44 13.93 5.56 0.08 -13.36 16 15 C 0.04 0.61 3.78 -4.98 -0.02 0.59 16 16 N -0.50 -7.84 3.41 -227.77 -0.78 -8.62 16 17 C 0.02 0.24 5.29 -3.71 -0.02 0.22 16 18 C 0.06 0.87 7.01 37.21 0.26 1.13 16 19 O -0.39 -5.04 10.83 -35.23 -0.38 -5.42 16 20 C 0.07 0.75 5.76 37.21 0.21 0.97 16 21 C 0.06 0.73 1.83 -67.60 -0.12 0.60 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.51 2.32 -90.73 -0.21 -1.72 16 24 H 0.10 1.06 6.19 -51.93 -0.32 0.74 16 25 C -0.12 -0.75 6.22 -25.01 -0.16 -0.90 16 26 C -0.12 -0.70 6.95 -24.68 -0.17 -0.87 16 27 C -0.19 -1.58 6.72 -26.31 -0.18 -1.76 16 28 C 0.36 4.62 5.71 -28.10 -0.16 4.46 16 29 O -0.40 -7.34 17.33 6.00 0.10 -7.24 16 30 H 0.08 1.46 7.26 -51.93 -0.38 1.09 16 31 H 0.05 0.74 7.22 -51.93 -0.38 0.37 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.74 6.44 -51.93 -0.33 0.41 16 34 H 0.07 1.18 7.89 -51.93 -0.41 0.77 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.03 0.79 7.89 -51.93 -0.41 0.38 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.10 1.47 4.80 -51.93 -0.25 1.22 16 39 H 0.05 0.72 7.38 -51.93 -0.38 0.33 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.11 2.03 5.88 -51.93 -0.31 1.73 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.69 7.09 -51.93 -0.37 0.32 16 45 H 0.10 0.81 6.17 -51.93 -0.32 0.49 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.42 5.74 -51.93 -0.30 0.13 16 48 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -36.33 391.39 -8.80 -45.13 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -8.29 Total: -0.25 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.72 Total: 6.11 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -0.47 Total: -48.46 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.20 Total: -26.02 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.33 -8.80 -45.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373689093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.139 kcal (2) G-P(sol) polarization free energy of solvation -36.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds