Wall clock time and date at job start Tue Mar 31 2020 20:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46500 * 120.00115 * 270.00004 * 3 2 1 5 5 C 1.50701 * 109.46973 * 89.99870 * 4 3 2 6 6 H 1.08006 * 119.99964 * 359.97438 * 5 4 3 7 7 C 1.37870 * 120.00144 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00230 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 120.00235 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46973 * 59.99777 * 9 7 5 11 11 H 1.48500 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46756 * 299.99980 * 9 7 5 13 13 C 1.34780 * 119.99743 * 90.00017 * 3 2 1 14 14 O 1.21279 * 119.99753 * 180.02562 * 13 3 2 15 15 C 1.50693 * 120.00154 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47564 * 180.02562 * 15 13 3 17 17 C 1.47018 * 110.99730 * 293.63880 * 16 15 13 18 18 C 1.53102 * 109.25624 * 177.60456 * 17 16 15 19 19 O 1.43018 * 109.25926 * 56.84549 * 18 17 16 20 20 C 1.43013 * 113.73653 * 301.32796 * 19 18 17 21 21 C 1.47009 * 111.00397 * 169.99981 * 16 15 13 22 22 H 1.08996 * 109.50688 * 62.45978 * 21 16 15 23 23 C 1.52994 * 109.50614 * 302.32715 * 21 16 15 24 24 H 1.09002 * 109.97329 * 59.81952 * 23 21 16 25 25 C 1.54286 * 109.98383 * 181.12986 * 23 21 16 26 26 C 1.54985 * 103.75157 * 142.47380 * 25 23 21 27 27 C 1.54903 * 102.33342 * 322.91409 * 26 25 23 28 28 C 1.51452 * 109.98607 * 298.54497 * 23 21 16 29 29 O 1.20755 * 126.33816 * 60.99244 * 28 23 21 30 30 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 35 35 H 1.08992 * 109.46978 * 209.99640 * 4 3 2 36 36 H 1.08993 * 109.47313 * 330.00169 * 4 3 2 37 37 H 0.96999 * 120.00362 * 180.02562 * 8 7 5 38 38 H 1.09001 * 109.47525 * 300.00358 * 15 13 3 39 39 H 1.09002 * 109.47555 * 59.99795 * 15 13 3 40 40 H 1.09003 * 109.50368 * 297.53501 * 17 16 15 41 41 H 1.09002 * 109.50776 * 57.66770 * 17 16 15 42 42 H 1.09003 * 109.50431 * 296.91112 * 18 17 16 43 43 H 1.09000 * 109.53733 * 176.80418 * 18 17 16 44 44 H 1.08994 * 109.51097 * 298.73682 * 20 19 18 45 45 H 1.09002 * 109.53957 * 178.62367 * 20 19 18 46 46 H 1.08995 * 110.56665 * 261.03856 * 25 23 21 47 47 H 1.08998 * 110.56982 * 23.90556 * 25 23 21 48 48 H 1.08995 * 110.83647 * 204.70717 * 26 25 23 49 49 H 1.08995 * 110.83571 * 81.12096 * 26 25 23 50 50 H 1.08995 * 110.44066 * 278.89092 * 27 26 25 51 51 H 1.08994 * 110.54551 * 156.41234 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 1.0068 2.7823 -1.7037 6 1 0.1157 2.7247 -1.0961 7 6 0.9950 3.5048 -2.8778 8 7 2.0799 3.5745 -3.6180 9 14 -0.5619 4.3849 -3.4175 10 1 -0.9546 5.3752 -2.3828 11 1 -0.3147 5.0840 -4.7041 12 1 -1.6541 3.3946 -3.5947 13 6 2.2430 2.0165 1.1673 14 8 2.6469 3.1600 1.1673 15 6 1.9924 1.3059 2.4723 16 7 2.3099 2.2060 3.5889 17 6 3.7487 2.5051 3.6318 18 6 4.0259 3.4906 4.7702 19 8 3.5512 2.9362 6.0001 20 6 2.1535 2.6336 5.9936 21 6 1.8573 1.6393 4.8677 22 1 2.3851 0.7051 5.0589 23 6 0.3521 1.3730 4.8041 24 1 0.1318 0.6710 3.9999 25 6 -0.1400 0.8041 6.1512 26 6 -1.5322 1.4583 6.3409 27 6 -1.3098 2.8810 5.7701 28 6 -0.3942 2.6712 4.5770 29 8 -0.2816 3.4039 3.6238 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.0645 2.7984 -1.1383 36 1 2.5506 1.3452 -2.0284 37 1 2.0717 4.0832 -4.4439 38 1 0.9446 1.0113 2.5303 39 1 2.6228 0.4186 2.5299 40 1 4.3068 1.5846 3.8033 41 1 4.0570 2.9473 2.6844 42 1 3.5106 4.4303 4.5716 43 1 5.0983 3.6717 4.8424 44 1 1.5837 3.5483 5.8306 45 1 1.8711 2.1945 6.9505 46 1 -0.2307 -0.2808 6.0984 47 1 0.5327 1.0944 6.9582 48 1 -1.7996 1.5017 7.3966 49 1 -2.2920 0.9256 5.7690 50 1 -0.8283 3.5179 6.5121 51 1 -2.2563 3.3176 5.4514 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373689093.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:33 Heat of formation + Delta-G solvation = -126.541691 kcal Electronic energy + Delta-G solvation = -32143.221330 eV Core-core repulsion = 28042.083290 eV Total energy + Delta-G solvation = -4101.138040 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.86920 -40.59140 -39.69169 -37.33790 -37.08822 -36.32474 -34.86414 -32.83976 -31.61438 -30.77803 -29.29011 -28.66145 -27.61684 -26.31062 -24.54324 -24.37896 -23.93783 -21.79970 -21.73954 -20.05924 -19.47259 -18.71249 -18.26958 -17.60173 -17.57246 -17.06527 -16.84061 -16.60850 -16.45321 -16.12504 -15.82218 -15.62695 -15.33491 -14.92803 -14.71996 -14.66420 -14.54056 -14.34426 -14.09960 -13.84621 -13.79579 -13.55981 -13.35543 -13.24545 -13.04750 -12.83727 -12.71067 -12.56800 -12.38287 -12.33208 -12.13414 -11.99392 -11.89335 -11.79145 -11.71866 -11.62152 -11.29890 -10.79067 -10.64682 -10.42662 -10.24572 -9.43193 -9.25165 -8.23071 -6.35580 1.11935 1.30552 1.35797 1.42676 1.85180 2.20005 2.36981 2.73762 2.82746 3.06077 3.26107 3.50065 3.62976 3.66840 3.88647 3.92148 4.01040 4.09291 4.10063 4.15881 4.20313 4.26978 4.31541 4.34996 4.45542 4.50820 4.55387 4.60576 4.65749 4.72165 4.77305 4.82491 4.90013 4.92556 4.97754 4.99768 5.03249 5.04174 5.21425 5.23436 5.27118 5.44167 5.46166 5.59424 5.79510 5.88661 5.96240 6.08020 6.10156 6.71127 6.75669 6.83006 7.29499 7.55291 8.83811 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.003791 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.776984 B = 7384.855437 C = 8046.628313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.104 3.896 3 N -0.607 5.607 4 C 0.265 3.735 5 C -0.531 4.531 6 H 0.047 0.953 7 C 0.009 3.991 8 N -0.928 5.928 9 Si 0.959 3.041 10 H -0.285 1.285 11 H -0.274 1.274 12 H -0.259 1.259 13 C 0.499 3.501 14 O -0.577 6.577 15 C 0.056 3.944 16 N -0.534 5.534 17 C 0.019 3.981 18 C 0.072 3.928 19 O -0.388 6.388 20 C 0.064 3.936 21 C 0.064 3.936 22 H 0.081 0.919 23 C -0.150 4.150 24 H 0.105 0.895 25 C -0.108 4.108 26 C -0.109 4.109 27 C -0.186 4.186 28 C 0.354 3.646 29 O -0.471 6.471 30 H 0.036 0.964 31 H 0.043 0.957 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.079 0.921 35 H -0.006 1.006 36 H 0.024 0.976 37 H 0.266 0.734 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.037 0.963 43 H 0.118 0.882 44 H 0.036 0.964 45 H 0.142 0.858 46 H 0.101 0.899 47 H 0.095 0.905 48 H 0.105 0.895 49 H 0.077 0.923 50 H 0.114 0.886 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -13.173 25.486 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.340 5.340 4 C 0.144 3.856 5 C -0.570 4.570 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.784 3.216 10 H -0.211 1.211 11 H -0.199 1.199 12 H -0.184 1.184 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.074 4.074 16 N -0.260 5.260 17 C -0.108 4.108 18 C -0.005 4.005 19 O -0.306 6.306 20 C -0.013 4.013 21 C -0.044 4.044 22 H 0.099 0.901 23 C -0.170 4.170 24 H 0.123 0.877 25 C -0.145 4.145 26 C -0.146 4.146 27 C -0.224 4.224 28 C 0.229 3.771 29 O -0.344 6.344 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.012 0.988 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.056 0.944 43 H 0.136 0.864 44 H 0.055 0.945 45 H 0.159 0.841 46 H 0.120 0.880 47 H 0.113 0.887 48 H 0.124 0.876 49 H 0.095 0.905 50 H 0.132 0.868 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.513 -11.719 24.872 27.862 hybrid contribution -0.276 0.536 -1.524 1.639 sum -4.789 -11.183 23.347 26.327 Atomic orbital electron populations 1.22148 0.95741 1.02835 1.01267 1.21735 0.95059 0.81149 1.03842 1.48293 1.64500 1.15039 1.06155 1.18676 0.95171 0.91452 0.80338 1.21626 0.97833 1.31456 1.06065 0.93449 1.25772 0.99662 0.96940 0.96593 1.70031 1.29397 1.42564 1.14846 0.85603 0.79871 0.78849 0.77300 1.21139 1.19916 1.18361 1.21087 0.77433 0.86582 0.86213 1.90600 1.47535 1.19854 1.87655 1.21946 1.03647 0.93945 0.87895 1.61706 1.16617 1.45239 1.02413 1.22828 0.87737 0.99565 1.00703 1.22607 1.00711 0.94612 0.82609 1.87939 1.24644 1.83052 1.34964 1.23041 0.81812 0.96958 0.99451 1.22310 0.94627 0.98220 0.89252 0.90135 1.22609 0.93896 0.97713 1.02757 0.87718 1.22491 0.96817 1.01854 0.93342 1.22433 0.97210 0.92001 1.02987 1.23038 1.00333 1.01557 0.97422 1.25540 0.80222 0.85677 0.85666 1.90564 1.60381 1.49560 1.33895 0.94445 0.93756 0.88506 0.87897 0.90276 0.98794 0.95852 0.92486 0.87130 0.89602 0.92946 0.91054 0.94412 0.86400 0.94525 0.84090 0.88027 0.88684 0.87628 0.90459 0.86816 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.86 10.24 71.98 0.74 -4.12 16 2 C 0.10 3.27 5.98 86.38 0.52 3.79 16 3 N -0.61 -27.06 2.46 -826.19 -2.03 -29.09 16 4 C 0.27 14.95 5.20 85.63 0.45 15.40 16 5 C -0.53 -32.19 8.92 25.60 0.23 -31.97 16 6 H 0.05 2.91 7.42 -2.91 -0.02 2.89 16 7 C 0.01 0.54 5.46 84.65 0.46 1.00 16 8 N -0.93 -58.22 13.29 21.44 0.28 -57.94 16 9 Si 0.96 47.60 29.54 68.60 2.03 49.63 16 10 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 11 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 13 C 0.50 22.32 7.38 87.65 0.65 22.97 16 14 O -0.58 -32.20 13.93 -3.03 -0.04 -32.24 16 15 C 0.06 1.74 3.78 85.55 0.32 2.06 16 16 N -0.53 -16.44 3.41 -874.54 -2.99 -19.43 16 17 C 0.02 0.60 5.29 86.31 0.46 1.06 16 18 C 0.07 1.95 7.01 72.02 0.50 2.45 16 19 O -0.39 -9.40 10.83 -148.98 -1.61 -11.01 16 20 C 0.06 1.26 5.76 72.02 0.41 1.68 16 21 C 0.06 1.31 1.83 44.93 0.08 1.39 16 22 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 23 C -0.15 -2.58 2.32 -10.87 -0.03 -2.60 16 24 H 0.11 1.79 6.19 -2.39 -0.01 1.78 16 25 C -0.11 -0.79 6.22 31.71 0.20 -0.59 16 26 C -0.11 -0.81 6.95 31.92 0.22 -0.59 16 27 C -0.19 -2.78 6.72 30.86 0.21 -2.58 16 28 C 0.35 8.83 5.71 29.71 0.17 9.00 16 29 O -0.47 -18.43 17.33 -1.44 -0.02 -18.45 16 30 H 0.04 1.41 7.26 -2.39 -0.02 1.40 16 31 H 0.04 1.34 7.22 -2.39 -0.02 1.32 16 32 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.10 2.31 6.44 -2.39 -0.02 2.29 16 34 H 0.08 2.42 7.89 -2.39 -0.02 2.40 16 35 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 36 H 0.02 1.33 7.89 -2.39 -0.02 1.31 16 37 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 38 H 0.11 3.15 4.80 -2.39 -0.01 3.14 16 39 H 0.09 2.07 7.38 -2.39 -0.02 2.05 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.07 2.79 5.88 -2.39 -0.01 2.78 16 42 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.04 0.87 7.09 -2.39 -0.02 0.86 16 45 H 0.14 1.59 6.17 -2.39 -0.01 1.58 16 46 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 47 H 0.09 0.43 5.74 -2.39 -0.01 0.41 16 48 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -88.56 391.39 2.13 -86.42 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.93 Total: 13.76 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 5.59 Total: 18.35 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.73 Total: -106.46 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.68 Total: -61.71 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -88.56 2.13 -86.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373689093.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.117 kcal (2) G-P(sol) polarization free energy of solvation -88.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds