Wall clock time and date at job start Tue Mar 31 2020 22:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.47208 * 2 1 4 4 C 1.34235 * 116.99823 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99807 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.50155 * 60.00080 * 6 4 3 8 8 O 1.42901 * 109.46949 * 300.07666 * 7 6 4 9 9 C 1.42905 * 113.99613 * 180.02562 * 8 7 6 10 10 C 1.53122 * 109.53587 * 299.90468 * 6 4 3 11 11 C 1.53121 * 109.15525 * 297.69423 * 10 6 4 12 12 C 1.53039 * 109.28016 * 302.34258 * 11 10 6 13 13 N 1.46853 * 109.51878 * 59.18610 * 12 11 10 14 14 C 1.46902 * 110.99752 * 174.16007 * 13 12 11 15 15 C 1.53002 * 109.46998 * 190.44609 * 14 13 12 16 16 H 1.09003 * 109.47076 * 305.15839 * 15 14 13 17 17 C 1.47205 * 109.46741 * 65.15794 * 15 14 13 18 18 N 5.35122 * 163.90260 * 202.65507 * 2 1 3 19 19 C 1.52997 * 109.47161 * 185.16011 * 15 14 13 20 20 C 1.50698 * 109.47040 * 175.00217 * 19 15 14 21 21 H 1.07999 * 120.00282 * 359.97438 * 20 19 15 22 22 C 1.37875 * 119.99734 * 179.97438 * 20 19 15 23 23 N 1.31517 * 120.00608 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46990 * 59.99676 * 24 22 20 26 26 H 1.48495 * 109.47371 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47158 * 300.00138 * 24 22 20 28 28 C 1.46848 * 111.19833 * 298.25377 * 13 12 11 29 29 H 1.08997 * 109.47324 * 59.99377 * 1 2 3 30 30 H 1.08999 * 109.47353 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46577 * 299.99491 * 1 2 3 32 32 H 1.09004 * 109.46577 * 240.00509 * 2 1 3 33 33 H 1.08997 * 109.47324 * 120.00623 * 2 1 3 34 34 H 1.08994 * 109.46937 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46992 * 60.07965 * 7 6 4 36 36 H 1.08996 * 109.46805 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47059 * 59.99615 * 9 8 7 38 38 H 1.09005 * 109.47015 * 299.99788 * 9 8 7 39 39 H 1.08996 * 109.52513 * 57.59545 * 10 6 4 40 40 H 1.08993 * 109.52284 * 177.79204 * 10 6 4 41 41 H 1.09008 * 109.49935 * 182.41065 * 11 10 6 42 42 H 1.08991 * 109.50797 * 62.29162 * 11 10 6 43 43 H 1.08997 * 109.46345 * 299.16903 * 12 11 10 44 44 H 1.08994 * 109.45710 * 179.19268 * 12 11 10 45 45 H 1.08997 * 109.46967 * 310.44978 * 14 13 12 46 46 H 1.09003 * 109.46867 * 70.44695 * 14 13 12 47 47 H 1.09004 * 109.46650 * 294.99946 * 19 15 14 48 48 H 1.09000 * 109.47389 * 54.99902 * 19 15 14 49 49 H 0.96995 * 120.00382 * 180.02562 * 23 22 20 50 50 H 1.09005 * 109.46201 * 301.73403 * 28 13 12 51 51 H 1.08994 * 109.46410 * 181.75667 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9209 2.9373 0.0000 7 6 3.4503 3.6842 1.2497 8 8 2.0232 3.7578 1.2516 9 6 1.4779 4.4404 2.3824 10 6 3.4511 3.6862 -1.2503 11 6 3.9768 2.9655 -2.4948 12 6 5.5035 2.8855 -2.4253 13 7 5.9021 2.1596 -1.2125 14 6 7.3547 1.9426 -1.1824 15 6 7.7017 0.9695 -0.0539 16 1 7.2963 1.3438 0.8862 17 6 7.1200 -0.3504 -0.3481 18 7 6.6714 -1.3693 -0.5715 19 6 9.2221 0.8428 0.0609 20 6 9.5661 -0.0182 1.2488 21 1 8.7791 -0.4332 1.8611 22 6 10.8857 -0.2762 1.5541 23 7 11.8441 0.2287 0.8084 24 14 11.3123 -1.3429 3.0271 25 1 10.7144 -2.6909 2.8518 26 1 12.7879 -1.4660 3.1384 27 1 10.7735 -0.7194 4.2625 28 6 5.4492 2.8580 -0.0027 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8669 4.6914 1.2494 35 1 3.7879 3.1526 2.1394 36 1 0.3905 4.4530 2.3096 37 1 1.8529 5.4636 2.4047 38 1 1.7746 3.9248 3.2959 39 1 2.3617 3.7073 -1.2745 40 1 3.8358 4.7058 -1.2301 41 1 3.6817 3.5179 -3.3870 42 1 3.5611 1.9588 -2.5352 43 1 5.9192 3.8927 -2.3989 44 1 5.8799 2.3602 -3.3030 45 1 7.6795 1.5248 -2.1352 46 1 7.8605 2.8929 -1.0111 47 1 9.6180 0.3857 -0.8460 48 1 9.6604 1.8323 0.1902 49 1 12.7724 0.0469 1.0230 50 1 5.8651 3.8655 0.0123 51 1 5.7861 2.3129 0.8789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374175293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:32 Heat of formation + Delta-G solvation = -109.622366 kcal Electronic energy + Delta-G solvation = -31534.329156 eV Core-core repulsion = 27433.924794 eV Total energy + Delta-G solvation = -4100.404363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.95032 -38.83952 -37.88453 -36.39296 -35.97121 -34.15235 -33.24872 -32.17688 -31.51612 -30.93086 -27.50775 -26.90044 -25.47263 -24.68165 -24.31341 -22.52568 -22.22856 -21.45997 -21.11206 -19.40151 -17.07384 -16.93840 -16.81809 -16.38930 -16.23069 -16.06386 -15.78520 -15.49955 -14.88697 -14.66852 -14.41445 -14.21625 -13.96108 -13.63449 -13.38498 -13.16133 -13.01924 -12.82963 -12.56004 -12.43943 -12.24128 -12.16911 -12.07633 -11.75788 -11.71738 -11.64802 -11.42544 -11.41680 -11.13276 -11.00918 -10.90561 -10.73395 -10.58581 -10.48898 -10.42159 -10.31039 -10.01507 -9.96746 -9.76586 -9.43406 -9.16337 -8.40443 -8.07778 -6.04736 -4.07123 2.56287 2.80737 3.34243 3.38039 3.38144 3.42922 3.97978 4.08098 4.18681 4.42066 4.46017 4.49559 4.65285 4.91813 4.92506 4.96024 5.00852 5.03858 5.07884 5.13715 5.17381 5.21845 5.24766 5.29069 5.33519 5.42132 5.45440 5.51118 5.55175 5.58804 5.64953 5.73590 5.75368 5.81636 5.82780 5.89989 5.96317 6.07389 6.09584 6.20507 6.48533 6.59603 6.73357 6.88664 7.22196 7.24014 7.48310 7.60356 7.91263 8.16106 8.30064 8.87988 8.98697 9.57824 11.06241 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003215 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.036856 B = 8706.772937 C = 8953.565745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.345 6.345 4 C 0.467 3.533 5 O -0.463 6.463 6 C -0.040 4.040 7 C 0.070 3.930 8 O -0.371 6.371 9 C 0.032 3.968 10 C -0.103 4.103 11 C -0.121 4.121 12 C 0.053 3.947 13 N -0.528 5.528 14 C 0.067 3.933 15 C 0.014 3.986 16 H 0.095 0.905 17 C 0.260 3.740 18 N -0.475 5.475 19 C 0.032 3.968 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.890 3.110 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.276 1.276 28 C 0.071 3.929 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.052 0.948 47 H 0.025 0.975 48 H 0.035 0.965 49 H 0.262 0.738 50 H 0.051 0.949 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.655 13.245 -2.275 25.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 O -0.263 6.263 4 C 0.307 3.693 5 O -0.347 6.347 6 C -0.042 4.042 7 C -0.007 4.007 8 O -0.289 6.289 9 C -0.065 4.065 10 C -0.141 4.141 11 C -0.159 4.159 12 C -0.075 4.075 13 N -0.252 5.252 14 C -0.061 4.061 15 C -0.008 4.008 16 H 0.113 0.887 17 C -0.058 4.058 18 N -0.152 5.152 19 C -0.007 4.007 20 C -0.561 4.561 21 H 0.074 0.926 22 C -0.139 4.139 23 N -0.532 5.532 24 Si 0.718 3.282 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.057 4.057 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.054 0.946 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -22.261 10.835 -2.799 24.915 hybrid contribution 1.085 0.503 1.255 1.733 sum -21.176 11.338 -1.544 24.070 Atomic orbital electron populations 1.21745 0.93110 1.02392 1.03180 1.22891 0.94893 0.81204 1.02272 1.86573 1.24529 1.30834 1.84349 1.23001 0.80682 0.91797 0.73843 1.90813 1.59918 1.41827 1.42112 1.20659 0.95974 0.90407 0.97139 1.22441 0.82464 0.99526 0.96284 1.88005 1.18989 1.77744 1.44193 1.22730 0.99498 0.95559 0.88705 1.21593 1.02247 0.98359 0.91891 1.21652 0.95513 1.01158 0.97538 1.22125 0.95365 0.96477 0.93505 1.61831 1.14563 1.47944 1.00844 1.22200 0.85545 0.98380 1.00017 1.19153 0.99433 0.84406 0.97837 0.88717 1.28517 0.90954 0.94125 0.92163 1.80887 1.11453 1.12978 1.09884 1.19164 0.85028 0.98403 0.98108 1.21115 0.92018 1.31101 1.11893 0.92601 1.24939 0.96471 0.95842 0.96679 1.69928 0.99773 1.44778 1.38729 0.86672 0.77148 0.81251 0.83118 1.20212 1.21225 1.20117 1.21960 0.90266 0.97774 0.95694 0.91756 0.90774 0.91706 0.91694 0.91780 0.91735 0.92500 0.89630 0.94178 0.94184 0.89772 0.90872 0.90980 0.91502 0.94638 0.90522 0.90109 0.92957 0.95630 0.94649 0.92820 0.93075 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.35 -4.69 8.88 -45.25 -0.40 -5.09 16 4 C 0.47 6.88 5.26 36.01 0.19 7.07 16 5 O -0.46 -8.57 14.88 -18.74 -0.28 -8.85 16 6 C -0.04 -0.47 0.57 -155.57 -0.09 -0.56 16 7 C 0.07 0.69 4.80 37.16 0.18 0.87 16 8 O -0.37 -3.81 8.77 -52.39 -0.46 -4.27 16 9 C 0.03 0.23 11.01 101.05 1.11 1.34 16 10 C -0.10 -1.02 4.56 -26.61 -0.12 -1.14 16 11 C -0.12 -1.27 5.84 -26.65 -0.16 -1.43 16 12 C 0.05 0.61 5.46 -3.83 -0.02 0.59 16 13 N -0.53 -7.52 3.22 -234.66 -0.76 -8.28 16 14 C 0.07 1.04 4.32 -3.82 -0.02 1.03 16 15 C 0.01 0.27 2.14 -93.41 -0.20 0.07 16 16 H 0.10 1.79 6.23 -51.93 -0.32 1.47 16 17 C 0.26 5.93 13.57 -20.78 -0.28 5.65 16 18 N -0.48 -11.81 18.53 42.13 0.78 -11.03 16 19 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 20 C -0.52 -14.32 8.60 -34.44 -0.30 -14.62 16 21 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 22 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 24 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.07 0.90 3.57 -3.83 -0.01 0.88 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.86 7.70 -51.93 -0.40 0.46 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 42 H 0.07 0.86 7.36 -51.93 -0.38 0.48 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.89 8.01 -51.93 -0.42 0.48 16 45 H 0.08 1.27 7.98 -51.93 -0.41 0.86 16 46 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.09 1.30 6.08 -51.93 -0.32 0.98 16 LS Contribution 412.12 15.07 6.21 6.21 Total: -1.00 -33.94 412.12 -7.48 -41.43 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -8.97 Total: -3.76 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 0.68 Total: 2.10 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.76 Total: -44.49 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.14 Total: -18.22 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.94 -7.48 -41.43 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374175293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.195 kcal (2) G-P(sol) polarization free energy of solvation -33.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds