Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45194 * 109.47208 * 2 1 4 4 C 1.34235 * 116.99823 * 180.02562 * 3 2 1 5 5 O 1.20817 * 120.00011 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99807 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.50155 * 60.00080 * 6 4 3 8 8 O 1.42901 * 109.46949 * 300.07666 * 7 6 4 9 9 C 1.42905 * 113.99613 * 180.02562 * 8 7 6 10 10 C 1.53122 * 109.53587 * 299.90468 * 6 4 3 11 11 C 1.53121 * 109.15525 * 297.69423 * 10 6 4 12 12 C 1.53039 * 109.28016 * 302.34258 * 11 10 6 13 13 N 1.46853 * 109.51878 * 59.18610 * 12 11 10 14 14 C 1.46902 * 110.99752 * 174.16007 * 13 12 11 15 15 C 1.53002 * 109.46998 * 190.44609 * 14 13 12 16 16 H 1.09003 * 109.47076 * 305.15839 * 15 14 13 17 17 C 1.47205 * 109.46741 * 65.15794 * 15 14 13 18 18 N 5.35122 * 163.90260 * 202.65507 * 2 1 3 19 19 C 1.52997 * 109.47161 * 185.16011 * 15 14 13 20 20 C 1.50698 * 109.47040 * 175.00217 * 19 15 14 21 21 H 1.07999 * 120.00282 * 359.97438 * 20 19 15 22 22 C 1.37875 * 119.99734 * 179.97438 * 20 19 15 23 23 N 1.31517 * 120.00608 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00073 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46990 * 59.99676 * 24 22 20 26 26 H 1.48495 * 109.47371 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47158 * 300.00138 * 24 22 20 28 28 C 1.46848 * 111.19833 * 298.25377 * 13 12 11 29 29 H 1.08997 * 109.47324 * 59.99377 * 1 2 3 30 30 H 1.08999 * 109.47353 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46577 * 299.99491 * 1 2 3 32 32 H 1.09004 * 109.46577 * 240.00509 * 2 1 3 33 33 H 1.08997 * 109.47324 * 120.00623 * 2 1 3 34 34 H 1.08994 * 109.46937 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.46992 * 60.07965 * 7 6 4 36 36 H 1.08996 * 109.46805 * 180.02562 * 9 8 7 37 37 H 1.08994 * 109.47059 * 59.99615 * 9 8 7 38 38 H 1.09005 * 109.47015 * 299.99788 * 9 8 7 39 39 H 1.08996 * 109.52513 * 57.59545 * 10 6 4 40 40 H 1.08993 * 109.52284 * 177.79204 * 10 6 4 41 41 H 1.09008 * 109.49935 * 182.41065 * 11 10 6 42 42 H 1.08991 * 109.50797 * 62.29162 * 11 10 6 43 43 H 1.08997 * 109.46345 * 299.16903 * 12 11 10 44 44 H 1.08994 * 109.45710 * 179.19268 * 12 11 10 45 45 H 1.08997 * 109.46967 * 310.44978 * 14 13 12 46 46 H 1.09003 * 109.46867 * 70.44695 * 14 13 12 47 47 H 1.09004 * 109.46650 * 294.99946 * 19 15 14 48 48 H 1.09000 * 109.47389 * 54.99902 * 19 15 14 49 49 H 0.96995 * 120.00382 * 180.02562 * 23 22 20 50 50 H 1.09005 * 109.46201 * 301.73403 * 28 13 12 51 51 H 1.08994 * 109.46410 * 181.75667 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0015 6 6 3.9209 2.9373 0.0000 7 6 3.4503 3.6842 1.2497 8 8 2.0232 3.7578 1.2516 9 6 1.4779 4.4404 2.3824 10 6 3.4511 3.6862 -1.2503 11 6 3.9768 2.9655 -2.4948 12 6 5.5035 2.8855 -2.4253 13 7 5.9021 2.1596 -1.2125 14 6 7.3547 1.9426 -1.1824 15 6 7.7017 0.9695 -0.0539 16 1 7.2963 1.3438 0.8862 17 6 7.1200 -0.3504 -0.3481 18 7 6.6714 -1.3693 -0.5715 19 6 9.2221 0.8428 0.0609 20 6 9.5661 -0.0182 1.2488 21 1 8.7791 -0.4332 1.8611 22 6 10.8857 -0.2762 1.5541 23 7 11.8441 0.2287 0.8084 24 14 11.3123 -1.3429 3.0271 25 1 10.7144 -2.6909 2.8518 26 1 12.7879 -1.4660 3.1384 27 1 10.7735 -0.7194 4.2625 28 6 5.4492 2.8580 -0.0027 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8669 4.6914 1.2494 35 1 3.7879 3.1526 2.1394 36 1 0.3905 4.4530 2.3096 37 1 1.8529 5.4636 2.4047 38 1 1.7746 3.9248 3.2959 39 1 2.3617 3.7073 -1.2745 40 1 3.8358 4.7058 -1.2301 41 1 3.6817 3.5179 -3.3870 42 1 3.5611 1.9588 -2.5352 43 1 5.9192 3.8927 -2.3989 44 1 5.8799 2.3602 -3.3030 45 1 7.6795 1.5248 -2.1352 46 1 7.8605 2.8929 -1.0111 47 1 9.6180 0.3857 -0.8460 48 1 9.6604 1.8323 0.1902 49 1 12.7724 0.0469 1.0230 50 1 5.8651 3.8655 0.0123 51 1 5.7861 2.3129 0.8789 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374175293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = -129.449321 kcal Electronic energy + Delta-G solvation = -31535.188918 eV Core-core repulsion = 27433.924794 eV Total energy + Delta-G solvation = -4101.264124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97842 -39.91785 -38.74189 -37.81911 -37.22781 -35.71665 -34.94145 -33.40275 -32.38610 -32.34077 -28.66394 -28.09739 -26.21649 -25.95651 -25.33171 -23.89764 -23.33522 -22.97361 -22.09951 -20.40013 -18.55712 -18.27833 -18.08849 -17.69806 -17.34605 -16.96693 -16.85883 -16.49263 -16.26665 -15.80594 -15.65045 -15.34028 -14.94357 -14.67079 -14.62001 -14.33819 -14.22882 -14.15818 -13.71439 -13.62895 -13.56267 -13.28613 -13.15929 -13.05110 -12.98010 -12.87361 -12.68369 -12.65353 -12.47920 -12.42303 -12.35916 -12.22195 -11.90520 -11.86222 -11.51467 -11.41720 -11.39285 -11.25421 -11.03734 -10.97749 -10.54953 -10.50666 -9.07461 -8.19629 -6.27503 1.38652 1.41031 1.46237 1.48192 1.82843 2.20114 2.30506 2.40970 2.60051 3.13690 3.15693 3.44864 3.57672 3.62474 3.81321 3.98899 4.04335 4.12752 4.14293 4.20230 4.32916 4.34069 4.35005 4.42376 4.48469 4.61631 4.62282 4.64657 4.66188 4.74897 4.76556 4.84295 4.90899 4.91915 4.92262 4.95899 4.97356 5.00169 5.09187 5.15299 5.28006 5.37002 5.46148 5.62916 5.67778 5.79102 6.09969 6.20620 6.26066 6.31143 6.83639 7.04735 7.07916 7.40443 8.91048 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012918 B = 0.003215 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.036856 B = 8706.772937 C = 8953.565745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 O -0.344 6.344 4 C 0.464 3.536 5 O -0.511 6.511 6 C -0.038 4.038 7 C 0.073 3.927 8 O -0.390 6.390 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.116 4.116 12 C 0.053 3.947 13 N -0.551 5.551 14 C 0.078 3.922 15 C 0.022 3.978 16 H 0.106 0.894 17 C 0.270 3.730 18 N -0.518 5.518 19 C 0.041 3.959 20 C -0.540 4.540 21 H 0.047 0.953 22 C 0.015 3.985 23 N -0.921 5.921 24 Si 0.946 3.054 25 H -0.284 1.284 26 H -0.278 1.278 27 H -0.263 1.263 28 C 0.070 3.930 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.033 0.967 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.000 1.000 48 H 0.039 0.961 49 H 0.265 0.735 50 H 0.084 0.916 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.748 15.919 -1.916 27.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.018 4.018 3 O -0.261 6.261 4 C 0.306 3.694 5 O -0.397 6.397 6 C -0.040 4.040 7 C -0.005 4.005 8 O -0.309 6.309 9 C -0.069 4.069 10 C -0.132 4.132 11 C -0.154 4.154 12 C -0.074 4.074 13 N -0.276 5.276 14 C -0.050 4.050 15 C 0.001 3.999 16 H 0.123 0.877 17 C -0.046 4.046 18 N -0.196 5.196 19 C 0.002 3.998 20 C -0.578 4.578 21 H 0.065 0.935 22 C -0.184 4.184 23 N -0.561 5.561 24 Si 0.771 3.229 25 H -0.211 1.211 26 H -0.203 1.203 27 H -0.187 1.187 28 C -0.058 4.058 29 H 0.089 0.911 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.066 0.934 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.052 0.948 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.096 0.904 47 H 0.019 0.981 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.102 0.898 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.387 13.535 -2.434 27.130 hybrid contribution 1.363 -0.356 1.143 1.814 sum -22.024 13.179 -1.292 25.699 Atomic orbital electron populations 1.21725 0.90092 1.03771 1.03771 1.23030 0.97235 0.80656 1.00838 1.86591 1.24243 1.31367 1.83904 1.23796 0.80581 0.92807 0.72171 1.90795 1.60833 1.43629 1.44471 1.20763 0.95262 0.88754 0.99209 1.22446 0.82663 1.00610 0.94745 1.87971 1.19079 1.78459 1.45416 1.22889 1.00083 0.96182 0.87731 1.21589 1.02110 0.99292 0.90254 1.21632 0.94722 0.99853 0.99201 1.22183 0.95964 0.97342 0.91891 1.61700 1.13318 1.50004 1.02576 1.22001 0.87214 0.98092 0.97726 1.19174 0.96451 0.83975 1.00333 0.87674 1.29185 0.90067 0.94448 0.90919 1.80868 1.12798 1.14343 1.11546 1.18975 0.87696 0.97522 0.95587 1.21481 0.91993 1.31465 1.12852 0.93504 1.25662 0.96565 0.97047 0.99166 1.70011 1.00069 1.45909 1.40095 0.85797 0.77251 0.79154 0.80670 1.21051 1.20302 1.18721 1.21997 0.90935 0.98815 0.94054 0.91070 0.89026 0.91077 0.93258 0.93187 0.88696 0.93436 0.88669 0.92435 0.94341 0.90023 0.87906 0.88416 0.94767 0.91962 0.91218 0.90669 0.90384 0.98145 0.94281 0.92626 0.89846 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.29 71.98 0.74 -1.55 16 2 C 0.06 1.43 6.19 71.98 0.45 1.88 16 3 O -0.34 -9.43 8.88 -45.75 -0.41 -9.84 16 4 C 0.46 13.81 5.26 71.24 0.37 14.19 16 5 O -0.51 -19.68 14.88 21.99 0.33 -19.35 16 6 C -0.04 -0.83 0.57 -52.87 -0.03 -0.86 16 7 C 0.07 1.26 4.80 71.98 0.35 1.61 16 8 O -0.39 -7.20 8.77 -132.57 -1.16 -8.36 16 9 C 0.03 0.33 11.01 113.37 1.25 1.58 16 10 C -0.10 -1.60 4.56 30.68 0.14 -1.46 16 11 C -0.12 -2.22 5.84 30.65 0.18 -2.04 16 12 C 0.05 1.11 5.46 86.33 0.47 1.58 16 13 N -0.55 -15.04 3.22 -896.34 -2.89 -17.93 16 14 C 0.08 2.36 4.32 86.30 0.37 2.73 16 15 C 0.02 0.89 2.14 -12.60 -0.03 0.86 16 16 H 0.11 3.98 6.23 -2.39 -0.01 3.96 16 17 C 0.27 12.67 13.57 89.45 1.21 13.89 16 18 N -0.52 -26.68 18.53 20.00 0.37 -26.31 16 19 C 0.04 1.97 4.42 29.85 0.13 2.10 16 20 C -0.54 -29.86 8.60 25.60 0.22 -29.64 16 21 H 0.05 2.62 7.59 -2.91 -0.02 2.60 16 22 C 0.01 0.83 5.46 84.65 0.46 1.29 16 23 N -0.92 -53.62 13.29 21.45 0.28 -53.34 16 24 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 25 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 27 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 28 C 0.07 1.62 3.57 86.33 0.31 1.93 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.05 1.37 8.13 -2.38 -0.02 1.36 16 33 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 34 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.08 1.46 7.70 -2.39 -0.02 1.45 16 40 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.03 0.87 7.36 -2.39 -0.02 0.86 16 43 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.53 8.01 -2.39 -0.02 1.51 16 45 H 0.07 2.34 7.98 -2.39 -0.02 2.32 16 46 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 47 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 48 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 50 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.07 1.92 6.08 -2.39 -0.01 1.91 16 Total: -1.00 -75.49 412.12 6.04 -69.45 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.89 Total: 10.93 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 6.60 Total: 8.09 kcal Atomic # 7 Polarization: -95.35 SS G_CDS: -2.23 Total: -97.58 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.24 Total: -37.55 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.49 6.04 -69.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374175293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.000 kcal (2) G-P(sol) polarization free energy of solvation -75.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds