Wall clock time and date at job start Tue Mar 31 2020 22:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45200 * 109.46942 * 2 1 4 4 C 1.34232 * 117.00087 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99486 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00238 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.50287 * 59.99369 * 6 4 3 8 8 O 1.42895 * 109.47399 * 299.92181 * 7 6 4 9 9 C 1.42899 * 114.00160 * 179.97438 * 8 7 6 10 10 C 1.53119 * 109.50040 * 299.91782 * 6 4 3 11 11 C 1.53123 * 109.16205 * 182.36457 * 10 6 4 12 12 C 1.53042 * 109.27676 * 57.65104 * 11 10 6 13 13 N 1.46842 * 109.52297 * 300.82413 * 12 11 10 14 14 C 1.46900 * 110.99696 * 185.83578 * 13 12 11 15 15 C 1.53004 * 109.47226 * 164.07572 * 14 13 12 16 16 H 1.09003 * 109.47072 * 56.08438 * 15 14 13 17 17 C 1.47196 * 109.47123 * 296.08875 * 15 14 13 18 18 N 8.47157 * 130.18617 * 29.56252 * 2 1 3 19 19 C 1.52993 * 109.47167 * 176.08375 * 15 14 13 20 20 C 1.50706 * 109.46936 * 185.00481 * 19 15 14 21 21 H 1.07996 * 119.99834 * 359.97438 * 20 19 15 22 22 C 1.37879 * 120.00062 * 180.02562 * 20 19 15 23 23 N 1.31516 * 119.99920 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00369 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47028 * 89.99850 * 24 22 20 26 26 H 1.48497 * 109.47652 * 210.00184 * 24 22 20 27 27 H 1.48504 * 109.47006 * 330.00238 * 24 22 20 28 28 C 1.46850 * 111.20161 * 61.74339 * 13 12 11 29 29 H 1.09000 * 109.47405 * 60.00391 * 1 2 3 30 30 H 1.09000 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47315 * 299.99831 * 1 2 3 32 32 H 1.09001 * 109.47315 * 240.00169 * 2 1 3 33 33 H 1.08992 * 109.47579 * 119.99911 * 2 1 3 34 34 H 1.09001 * 109.46978 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46981 * 59.92181 * 7 6 4 36 36 H 1.09001 * 109.47538 * 180.02562 * 9 8 7 37 37 H 1.08998 * 109.47114 * 59.99926 * 9 8 7 38 38 H 1.09006 * 109.47268 * 300.00371 * 9 8 7 39 39 H 1.08998 * 109.52594 * 302.27006 * 10 6 4 40 40 H 1.09001 * 109.52401 * 62.39554 * 10 6 4 41 41 H 1.08995 * 109.50563 * 177.59343 * 11 10 6 42 42 H 1.09001 * 109.50015 * 297.71784 * 11 10 6 43 43 H 1.09001 * 109.45606 * 60.83980 * 12 11 10 44 44 H 1.08995 * 109.46293 * 180.81716 * 12 11 10 45 45 H 1.08998 * 109.47799 * 284.07459 * 14 13 12 46 46 H 1.09003 * 109.47044 * 44.07828 * 14 13 12 47 47 H 1.08996 * 109.47494 * 304.99890 * 19 15 14 48 48 H 1.08997 * 109.47595 * 65.00550 * 19 15 14 49 49 H 0.97004 * 119.99990 * 180.02562 * 23 22 20 50 50 H 1.08993 * 109.46834 * 178.23859 * 28 13 12 51 51 H 1.09004 * 109.45806 * 58.26753 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 3.4500 3.6844 1.2496 8 8 2.0231 3.7612 1.2495 9 6 1.4777 4.4431 2.3807 10 6 3.4502 3.6857 -1.2503 11 6 4.0868 5.0782 -1.2721 12 6 5.6104 4.9378 -1.2383 13 7 6.0099 4.2161 -0.0235 14 6 7.4722 4.1834 0.1124 15 6 7.8427 3.7922 1.5445 16 1 7.3769 2.8385 1.7927 17 6 7.3658 4.8281 2.4751 18 7 6.9965 5.6293 3.1930 19 6 9.3627 3.6628 1.6607 20 6 9.7203 3.1590 3.0353 21 1 8.9413 2.9522 3.7541 22 6 11.0420 2.9630 3.3755 23 7 11.9907 3.2163 2.5006 24 14 11.4854 2.3392 5.0795 25 1 11.5264 0.8548 5.0680 26 1 12.8170 2.8682 5.4695 27 1 10.4650 2.7986 6.0558 28 6 5.4490 2.8591 -0.0031 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8673 4.6914 1.2497 35 1 3.7852 3.1513 2.1393 36 1 0.3903 4.4582 2.3063 37 1 1.8548 5.4655 2.4052 38 1 1.7719 3.9254 3.2937 39 1 3.7517 3.1334 -2.1404 40 1 2.3645 3.7807 -1.2310 41 1 3.7895 5.6000 -2.1816 42 1 3.7541 5.6439 -0.4018 43 1 5.9435 4.3838 -2.1160 44 1 6.0664 5.9277 -1.2391 45 1 7.8855 3.4522 -0.5823 46 1 7.8801 5.1690 -0.1120 47 1 9.7261 2.9605 0.9105 48 1 9.8238 4.6373 1.4997 49 1 12.9206 3.0781 2.7398 50 1 5.7878 2.3394 0.8930 51 1 5.7830 2.3149 -0.8866 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374175294.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:34 Heat of formation + Delta-G solvation = -132.872657 kcal Electronic energy + Delta-G solvation = -31160.073298 eV Core-core repulsion = 27058.660727 eV Total energy + Delta-G solvation = -4101.412571 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10875 -40.28089 -38.71894 -37.88423 -37.51120 -35.77136 -34.95089 -33.33716 -32.42839 -32.24783 -28.71145 -28.28409 -26.31601 -26.08994 -25.44122 -23.87908 -23.59848 -23.07002 -21.99124 -20.00559 -18.78983 -18.43936 -18.15262 -17.93976 -17.62027 -17.14040 -16.76114 -16.47037 -16.38956 -15.82853 -15.64952 -15.44716 -14.99275 -14.78430 -14.71530 -14.39693 -14.35129 -14.10970 -13.88042 -13.69559 -13.57030 -13.56052 -13.20650 -13.09665 -13.00110 -12.85861 -12.72229 -12.55807 -12.48163 -12.40012 -12.34891 -12.29476 -12.00744 -11.87334 -11.64242 -11.49324 -11.43582 -11.37052 -11.16434 -11.01445 -10.57196 -10.55153 -9.28737 -8.20224 -6.28037 1.10392 1.38849 1.40431 1.49669 1.60672 2.06743 2.14253 2.40482 2.69233 2.89500 3.15262 3.35062 3.45990 3.59018 3.72028 4.00750 4.02497 4.05689 4.11597 4.18947 4.29028 4.33428 4.35489 4.36912 4.50973 4.55139 4.56928 4.60745 4.63347 4.71394 4.78448 4.82752 4.86511 4.87830 4.92310 4.95221 4.95470 4.98556 5.10625 5.16566 5.27602 5.41517 5.46179 5.47006 5.61742 5.78469 5.97948 6.11457 6.17407 6.21916 6.72257 6.82717 6.93757 7.40288 8.90645 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.003071 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.438884 B = 9115.563836 C = 9644.767499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.336 6.336 4 C 0.476 3.524 5 O -0.538 6.538 6 C -0.037 4.037 7 C 0.085 3.915 8 O -0.385 6.385 9 C 0.029 3.971 10 C -0.098 4.098 11 C -0.108 4.108 12 C 0.049 3.951 13 N -0.547 5.547 14 C 0.074 3.926 15 C 0.019 3.981 16 H 0.105 0.895 17 C 0.267 3.733 18 N -0.509 5.509 19 C 0.039 3.961 20 C -0.539 4.539 21 H 0.051 0.949 22 C 0.013 3.987 23 N -0.922 5.922 24 Si 0.946 3.054 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.276 1.276 28 C 0.076 3.924 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.032 0.968 36 H 0.105 0.895 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.067 0.933 43 H 0.049 0.951 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.033 0.967 48 H 0.006 0.994 49 H 0.264 0.736 50 H 0.072 0.928 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.105 -1.280 -11.484 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.251 6.251 4 C 0.319 3.681 5 O -0.428 6.428 6 C -0.039 4.039 7 C 0.008 3.992 8 O -0.304 6.304 9 C -0.067 4.067 10 C -0.135 4.135 11 C -0.145 4.145 12 C -0.078 4.078 13 N -0.272 5.272 14 C -0.054 4.054 15 C -0.003 4.003 16 H 0.123 0.877 17 C -0.049 4.049 18 N -0.186 5.186 19 C 0.000 4.000 20 C -0.577 4.577 21 H 0.069 0.931 22 C -0.186 4.186 23 N -0.562 5.562 24 Si 0.772 3.228 25 H -0.194 1.194 26 H -0.208 1.208 27 H -0.201 1.201 28 C -0.053 4.053 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.123 0.877 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.105 0.895 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.051 0.949 48 H 0.025 0.975 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.614 -0.201 -10.176 26.635 hybrid contribution 1.520 -1.326 0.661 2.123 sum -23.093 -1.527 -9.515 25.023 Atomic orbital electron populations 1.21767 0.90297 1.04087 1.03676 1.23283 0.97265 0.79740 1.02135 1.86624 1.23002 1.32691 1.82804 1.23701 0.81194 0.92025 0.71145 1.90669 1.61274 1.43947 1.46920 1.20562 0.95296 0.88543 0.99461 1.22293 0.81996 1.00485 0.94441 1.87901 1.19082 1.78273 1.45125 1.22855 1.00329 0.95726 0.87836 1.21564 1.02205 0.96212 0.93564 1.21597 0.93532 0.95777 1.03636 1.22281 0.96654 0.99060 0.89810 1.61841 1.09956 1.15407 1.39965 1.22068 0.86761 1.03206 0.93412 1.19164 0.97848 0.92679 0.90581 0.87739 1.29268 0.90120 0.93108 0.92387 1.81034 1.12888 1.12781 1.11946 1.18976 0.87712 0.96878 0.96406 1.21535 0.92204 1.44224 0.99773 0.93112 1.25680 0.96722 0.95761 1.00444 1.70024 1.00377 1.49610 1.36162 0.85727 0.77436 0.79046 0.80576 1.19379 1.20775 1.20110 1.21858 0.90461 0.90324 1.02616 0.91040 0.88391 0.91621 0.91298 0.92171 0.90229 0.94963 0.87665 0.93742 0.94738 0.90950 0.89319 0.88330 0.91474 0.93233 0.89541 0.91099 0.89172 0.94867 0.97528 0.92683 0.90961 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 10.29 71.98 0.74 -0.96 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.34 -7.90 8.95 -45.74 -0.41 -8.31 16 4 C 0.48 12.64 6.55 71.24 0.47 13.10 16 5 O -0.54 -17.17 15.74 21.96 0.35 -16.82 16 6 C -0.04 -0.86 0.56 -52.88 -0.03 -0.89 16 7 C 0.08 2.07 4.35 71.98 0.31 2.38 16 8 O -0.38 -8.67 8.69 -132.65 -1.15 -9.82 16 9 C 0.03 0.52 11.01 113.37 1.25 1.77 16 10 C -0.10 -1.76 4.60 30.67 0.14 -1.62 16 11 C -0.11 -1.71 5.74 30.65 0.18 -1.53 16 12 C 0.05 0.90 5.44 86.33 0.47 1.37 16 13 N -0.55 -13.26 3.57 -896.36 -3.20 -16.46 16 14 C 0.07 2.05 4.35 86.30 0.38 2.42 16 15 C 0.02 0.70 2.21 -12.60 -0.03 0.67 16 16 H 0.10 3.73 6.52 -2.39 -0.02 3.72 16 17 C 0.27 10.89 13.65 89.42 1.22 12.11 16 18 N -0.51 -22.39 18.55 20.02 0.37 -22.01 16 19 C 0.04 1.81 4.42 29.85 0.13 1.94 16 20 C -0.54 -29.00 8.60 25.60 0.22 -28.78 16 21 H 0.05 2.73 7.59 -2.91 -0.02 2.71 16 22 C 0.01 0.72 5.46 84.65 0.46 1.18 16 23 N -0.92 -53.20 13.29 21.45 0.28 -52.91 16 24 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 25 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 28 C 0.08 1.92 3.32 86.32 0.29 2.20 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 33 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 34 H 0.08 2.01 6.01 -2.39 -0.01 1.99 16 35 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.09 1.59 7.62 -2.39 -0.02 1.58 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.22 6.58 -2.39 -0.02 1.20 16 43 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.09 1.50 7.96 -2.39 -0.02 1.48 16 45 H 0.07 1.81 8.06 -2.39 -0.02 1.79 16 46 H 0.09 2.40 7.87 -2.39 -0.02 2.38 16 47 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 50 H 0.07 2.11 6.40 -2.39 -0.02 2.10 16 51 H 0.06 1.40 8.08 -2.38 -0.02 1.38 16 Total: -1.00 -67.60 411.34 5.81 -61.79 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.90 Total: 11.74 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 6.64 Total: 6.74 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -2.54 Total: -91.38 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -1.22 Total: -34.95 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -67.60 5.81 -61.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374175294.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.082 kcal (2) G-P(sol) polarization free energy of solvation -67.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds