Wall clock time and date at job start Tue Mar 31 2020 22:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47302 * 2 1 4 4 C 1.34235 * 116.99889 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99894 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99934 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.50733 * 299.92445 * 6 4 3 8 8 O 1.42902 * 109.47246 * 59.99352 * 7 6 4 9 9 C 1.42899 * 114.00308 * 180.02562 * 8 7 6 10 10 C 1.53125 * 109.50500 * 60.00035 * 6 4 3 11 11 C 1.53128 * 109.15691 * 62.28563 * 10 6 4 12 12 C 1.53036 * 109.27845 * 57.65648 * 11 10 6 13 13 N 1.46850 * 109.52242 * 300.81990 * 12 11 10 14 14 C 1.46896 * 110.99801 * 185.83812 * 13 12 11 15 15 C 1.52999 * 109.47157 * 164.07224 * 14 13 12 16 16 H 1.08999 * 109.46882 * 55.47481 * 15 14 13 17 17 C 1.47197 * 109.47195 * 295.47228 * 15 14 13 18 18 N 5.38118 * 161.98755 * 147.73291 * 2 1 3 19 19 C 1.53006 * 109.47079 * 175.47476 * 15 14 13 20 20 C 1.50698 * 109.46772 * 185.00269 * 19 15 14 21 21 H 1.07999 * 120.00571 * 359.97438 * 20 19 15 22 22 C 1.37881 * 119.99693 * 179.97438 * 20 19 15 23 23 N 1.31517 * 120.00183 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47087 * 89.99932 * 24 22 20 26 26 H 1.48493 * 109.47474 * 209.99999 * 24 22 20 27 27 H 1.48508 * 109.47363 * 330.00305 * 24 22 20 28 28 C 1.46846 * 111.19917 * 61.74280 * 13 12 11 29 29 H 1.08994 * 109.46942 * 59.99904 * 1 2 3 30 30 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46756 * 299.99927 * 1 2 3 32 32 H 1.09006 * 109.47304 * 120.00069 * 2 1 3 33 33 H 1.09004 * 109.47233 * 239.99346 * 2 1 3 34 34 H 1.08994 * 109.47540 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46519 * 300.00040 * 7 6 4 36 36 H 1.08997 * 109.47104 * 180.02562 * 9 8 7 37 37 H 1.09006 * 109.47043 * 300.00929 * 9 8 7 38 38 H 1.09004 * 109.46400 * 60.00261 * 9 8 7 39 39 H 1.08992 * 109.52417 * 182.18864 * 10 6 4 40 40 H 1.09002 * 109.51891 * 302.38530 * 10 6 4 41 41 H 1.09000 * 109.50028 * 177.59853 * 11 10 6 42 42 H 1.09005 * 109.50014 * 297.67632 * 11 10 6 43 43 H 1.09002 * 109.46046 * 60.83542 * 12 11 10 44 44 H 1.08998 * 109.46086 * 180.80174 * 12 11 10 45 45 H 1.08998 * 109.47548 * 284.07579 * 14 13 12 46 46 H 1.09007 * 109.47311 * 44.07277 * 14 13 12 47 47 H 1.09001 * 109.46855 * 304.99738 * 19 15 14 48 48 H 1.09000 * 109.47306 * 65.00058 * 19 15 14 49 49 H 0.96998 * 120.00073 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.46443 * 178.23810 * 28 13 12 51 51 H 1.09008 * 109.46203 * 58.27165 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 -0.0012 7 6 3.4509 3.6840 -1.2511 8 8 2.0239 3.7592 -1.2528 9 6 1.4790 4.4407 -2.3844 10 6 3.4499 3.6859 1.2488 11 6 3.9742 2.9649 2.4938 12 6 5.5010 2.8848 2.4259 13 7 5.9008 2.1593 1.2133 14 6 7.3534 1.9424 1.1847 15 6 7.6882 0.8677 0.1484 16 1 7.2794 1.1567 -0.8198 17 6 7.1010 -0.4160 0.5655 18 7 6.6474 -1.4070 0.8883 19 6 9.2072 0.7216 0.0376 20 6 9.5394 -0.2467 -1.0682 21 1 8.7465 -0.7119 -1.6351 22 6 10.8557 -0.5389 -1.3563 23 7 11.8214 0.0278 -0.6664 24 14 11.2675 -1.7398 -2.7266 25 1 11.4108 -1.0004 -4.0064 26 1 12.5418 -2.4336 -2.4105 27 1 10.1772 -2.7403 -2.8524 28 6 5.4492 2.8580 0.0033 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8682 4.6909 -1.2513 35 1 3.7876 3.1514 -2.1406 36 1 0.3916 4.4553 -2.3108 37 1 1.8551 5.4636 -2.4082 38 1 1.7749 3.9234 -3.2971 39 1 3.8345 4.7055 1.2293 40 1 2.3603 3.7069 1.2718 41 1 3.6781 3.5170 3.3858 42 1 3.5578 1.9583 2.5338 43 1 5.9167 3.8921 2.4001 44 1 5.8765 2.3594 3.3039 45 1 7.8546 2.8728 0.9181 46 1 7.6916 1.6164 2.1684 47 1 9.6503 1.6925 -0.1843 48 1 9.6060 0.3472 0.9805 49 1 12.7474 -0.1781 -0.8689 50 1 5.7871 2.3131 -0.8782 51 1 5.8652 3.8654 -0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374175295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:37 Heat of formation + Delta-G solvation = -110.534558 kcal Electronic energy + Delta-G solvation = -31509.849634 eV Core-core repulsion = 27409.405716 eV Total energy + Delta-G solvation = -4100.443918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.95117 -38.83305 -37.88574 -36.38788 -35.96642 -34.13934 -33.24564 -32.16572 -31.51822 -30.94959 -27.51311 -26.89957 -25.48111 -24.65187 -24.31093 -22.52655 -22.22932 -21.47994 -21.11916 -19.39869 -17.07366 -16.92835 -16.81863 -16.39107 -16.23983 -16.07325 -15.78390 -15.50537 -14.88398 -14.66676 -14.39830 -14.21968 -13.95729 -13.64223 -13.38318 -13.15917 -13.02740 -12.82978 -12.56037 -12.44988 -12.25220 -12.17144 -12.08542 -11.75622 -11.70877 -11.64825 -11.42029 -11.39346 -11.13181 -11.01657 -10.91239 -10.71356 -10.59182 -10.49685 -10.39816 -10.31293 -10.02317 -9.98631 -9.77275 -9.42658 -9.15028 -8.40346 -8.07996 -6.04469 -4.06580 2.55667 2.80306 3.32347 3.37383 3.39171 3.45307 3.97779 4.07832 4.18170 4.41653 4.46459 4.48929 4.64755 4.91334 4.92460 4.95550 5.00720 5.03659 5.07197 5.13986 5.16830 5.21115 5.24072 5.28951 5.33913 5.41879 5.44961 5.50342 5.54923 5.58772 5.65226 5.73583 5.75123 5.81774 5.83512 5.89948 5.95818 6.07605 6.09396 6.20414 6.49376 6.60516 6.72977 6.88029 7.22223 7.24086 7.48936 7.61041 7.91932 8.15510 8.30744 8.88355 8.99490 9.58374 11.06556 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.003203 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.098094 B = 8739.768447 C = 9015.815154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.062 3.938 3 O -0.345 6.345 4 C 0.467 3.533 5 O -0.464 6.464 6 C -0.040 4.040 7 C 0.071 3.929 8 O -0.371 6.371 9 C 0.032 3.968 10 C -0.103 4.103 11 C -0.121 4.121 12 C 0.053 3.947 13 N -0.528 5.528 14 C 0.067 3.933 15 C 0.015 3.985 16 H 0.095 0.905 17 C 0.262 3.738 18 N -0.479 5.479 19 C 0.031 3.969 20 C -0.522 4.522 21 H 0.056 0.944 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.890 3.110 25 H -0.279 1.279 26 H -0.286 1.286 27 H -0.274 1.274 28 C 0.073 3.927 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.035 0.965 48 H 0.025 0.975 49 H 0.261 0.739 50 H 0.091 0.909 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.588 13.845 1.449 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 O -0.263 6.263 4 C 0.307 3.693 5 O -0.347 6.347 6 C -0.042 4.042 7 C -0.007 4.007 8 O -0.289 6.289 9 C -0.065 4.065 10 C -0.141 4.141 11 C -0.159 4.159 12 C -0.075 4.075 13 N -0.252 5.252 14 C -0.062 4.062 15 C -0.007 4.007 16 H 0.113 0.887 17 C -0.055 4.055 18 N -0.156 5.156 19 C -0.008 4.008 20 C -0.560 4.560 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.532 5.532 24 Si 0.718 3.282 25 H -0.205 1.205 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.055 4.055 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.053 0.947 48 H 0.043 0.957 49 H 0.071 0.929 50 H 0.109 0.891 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.208 11.474 2.123 25.087 hybrid contribution 1.088 0.421 -1.240 1.702 sum -21.120 11.895 0.883 24.255 Atomic orbital electron populations 1.21743 0.93103 1.02401 1.03178 1.22896 0.94901 0.81186 1.02288 1.86572 1.24517 1.30853 1.84337 1.22997 0.80682 0.91788 0.73818 1.90812 1.59936 1.41846 1.42154 1.20658 0.95985 0.90411 0.97145 1.22439 0.82473 0.99508 0.96271 1.88004 1.19003 1.77810 1.44119 1.22732 0.99510 0.95562 0.88683 1.21596 1.02253 0.98350 0.91891 1.21654 0.95519 1.01168 0.97535 1.22132 0.95359 0.96474 0.93494 1.61816 1.14586 1.47963 1.00836 1.22203 0.85552 0.97917 1.00499 1.19127 0.99265 0.84448 0.97818 0.88709 1.28581 0.90844 0.93940 0.92160 1.80937 1.11621 1.12751 1.10247 1.19173 0.85115 0.98327 0.98147 1.21158 0.92048 1.25671 1.17121 0.92535 1.24945 0.96450 0.96114 0.96475 1.69941 0.99578 1.43389 1.40314 0.86612 0.77900 0.81455 0.82258 1.20542 1.21181 1.19834 1.21943 0.90269 0.97718 0.95609 0.91699 0.90766 0.91761 0.91677 0.91771 0.91746 0.92495 0.89624 0.94190 0.94178 0.90878 0.89765 0.90983 0.91498 0.94653 0.90526 0.92842 0.90193 0.94652 0.95653 0.92895 0.89065 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.35 -4.68 8.88 -45.23 -0.40 -5.08 16 4 C 0.47 6.86 5.26 36.00 0.19 7.05 16 5 O -0.46 -8.57 14.99 -18.75 -0.28 -8.85 16 6 C -0.04 -0.47 0.57 -155.58 -0.09 -0.55 16 7 C 0.07 0.68 4.80 37.16 0.18 0.86 16 8 O -0.37 -3.77 8.77 -52.33 -0.46 -4.23 16 9 C 0.03 0.23 11.01 101.05 1.11 1.34 16 10 C -0.10 -1.02 4.56 -26.60 -0.12 -1.14 16 11 C -0.12 -1.28 5.84 -26.65 -0.16 -1.44 16 12 C 0.05 0.62 5.44 -3.83 -0.02 0.60 16 13 N -0.53 -7.51 3.17 -234.67 -0.74 -8.25 16 14 C 0.07 1.04 4.34 -3.83 -0.02 1.02 16 15 C 0.02 0.30 2.22 -93.41 -0.21 0.10 16 16 H 0.10 1.81 6.50 -51.93 -0.34 1.48 16 17 C 0.26 5.99 13.66 -20.74 -0.28 5.71 16 18 N -0.48 -11.91 18.54 42.18 0.78 -11.13 16 19 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 20 C -0.52 -14.32 8.60 -34.44 -0.30 -14.62 16 21 H 0.06 1.57 7.59 -52.49 -0.40 1.17 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.94 13.29 55.43 0.74 -25.21 16 24 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.07 0.90 3.58 -3.83 -0.01 0.89 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.87 7.35 -51.93 -0.38 0.49 16 43 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.91 7.96 -51.93 -0.41 0.49 16 45 H 0.05 0.74 8.06 -51.93 -0.42 0.32 16 46 H 0.08 1.25 7.87 -51.93 -0.41 0.84 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.09 1.26 6.36 -51.93 -0.33 0.93 16 51 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 412.68 15.07 6.22 6.22 Total: -1.00 -34.05 412.68 -7.49 -41.53 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -8.99 Total: -3.91 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.67 Total: 2.14 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.78 Total: -44.59 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -1.14 Total: -18.16 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.05 -7.49 -41.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374175295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.003 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds