Wall clock time and date at job start Tue Mar 31 2020 22:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47302 * 2 1 4 4 C 1.34235 * 116.99889 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99894 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99934 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.50733 * 299.92445 * 6 4 3 8 8 O 1.42902 * 109.47246 * 59.99352 * 7 6 4 9 9 C 1.42899 * 114.00308 * 180.02562 * 8 7 6 10 10 C 1.53125 * 109.50500 * 60.00035 * 6 4 3 11 11 C 1.53128 * 109.15691 * 62.28563 * 10 6 4 12 12 C 1.53036 * 109.27845 * 57.65648 * 11 10 6 13 13 N 1.46850 * 109.52242 * 300.81990 * 12 11 10 14 14 C 1.46896 * 110.99801 * 185.83812 * 13 12 11 15 15 C 1.52999 * 109.47157 * 164.07224 * 14 13 12 16 16 H 1.08999 * 109.46882 * 55.47481 * 15 14 13 17 17 C 1.47197 * 109.47195 * 295.47228 * 15 14 13 18 18 N 5.38118 * 161.98755 * 147.73291 * 2 1 3 19 19 C 1.53006 * 109.47079 * 175.47476 * 15 14 13 20 20 C 1.50698 * 109.46772 * 185.00269 * 19 15 14 21 21 H 1.07999 * 120.00571 * 359.97438 * 20 19 15 22 22 C 1.37881 * 119.99693 * 179.97438 * 20 19 15 23 23 N 1.31517 * 120.00183 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99944 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47087 * 89.99932 * 24 22 20 26 26 H 1.48493 * 109.47474 * 209.99999 * 24 22 20 27 27 H 1.48508 * 109.47363 * 330.00305 * 24 22 20 28 28 C 1.46846 * 111.19917 * 61.74280 * 13 12 11 29 29 H 1.08994 * 109.46942 * 59.99904 * 1 2 3 30 30 H 1.08998 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46756 * 299.99927 * 1 2 3 32 32 H 1.09006 * 109.47304 * 120.00069 * 2 1 3 33 33 H 1.09004 * 109.47233 * 239.99346 * 2 1 3 34 34 H 1.08994 * 109.47540 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46519 * 300.00040 * 7 6 4 36 36 H 1.08997 * 109.47104 * 180.02562 * 9 8 7 37 37 H 1.09006 * 109.47043 * 300.00929 * 9 8 7 38 38 H 1.09004 * 109.46400 * 60.00261 * 9 8 7 39 39 H 1.08992 * 109.52417 * 182.18864 * 10 6 4 40 40 H 1.09002 * 109.51891 * 302.38530 * 10 6 4 41 41 H 1.09000 * 109.50028 * 177.59853 * 11 10 6 42 42 H 1.09005 * 109.50014 * 297.67632 * 11 10 6 43 43 H 1.09002 * 109.46046 * 60.83542 * 12 11 10 44 44 H 1.08998 * 109.46086 * 180.80174 * 12 11 10 45 45 H 1.08998 * 109.47548 * 284.07579 * 14 13 12 46 46 H 1.09007 * 109.47311 * 44.07277 * 14 13 12 47 47 H 1.09001 * 109.46855 * 304.99738 * 19 15 14 48 48 H 1.09000 * 109.47306 * 65.00058 * 19 15 14 49 49 H 0.96998 * 120.00073 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.46443 * 178.23810 * 28 13 12 51 51 H 1.09008 * 109.46203 * 58.27165 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9372 -0.0012 7 6 3.4509 3.6840 -1.2511 8 8 2.0239 3.7592 -1.2528 9 6 1.4790 4.4407 -2.3844 10 6 3.4499 3.6859 1.2488 11 6 3.9742 2.9649 2.4938 12 6 5.5010 2.8848 2.4259 13 7 5.9008 2.1593 1.2133 14 6 7.3534 1.9424 1.1847 15 6 7.6882 0.8677 0.1484 16 1 7.2794 1.1567 -0.8198 17 6 7.1010 -0.4160 0.5655 18 7 6.6474 -1.4070 0.8883 19 6 9.2072 0.7216 0.0376 20 6 9.5394 -0.2467 -1.0682 21 1 8.7465 -0.7119 -1.6351 22 6 10.8557 -0.5389 -1.3563 23 7 11.8214 0.0278 -0.6664 24 14 11.2675 -1.7398 -2.7266 25 1 11.4108 -1.0004 -4.0064 26 1 12.5418 -2.4336 -2.4105 27 1 10.1772 -2.7403 -2.8524 28 6 5.4492 2.8580 0.0033 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 3.8682 4.6909 -1.2513 35 1 3.7876 3.1514 -2.1406 36 1 0.3916 4.4553 -2.3108 37 1 1.8551 5.4636 -2.4082 38 1 1.7749 3.9234 -3.2971 39 1 3.8345 4.7055 1.2293 40 1 2.3603 3.7069 1.2718 41 1 3.6781 3.5170 3.3858 42 1 3.5578 1.9583 2.5338 43 1 5.9167 3.8921 2.4001 44 1 5.8765 2.3594 3.3039 45 1 7.8546 2.8728 0.9181 46 1 7.6916 1.6164 2.1684 47 1 9.6503 1.6925 -0.1843 48 1 9.6060 0.3472 0.9805 49 1 12.7474 -0.1781 -0.8689 50 1 5.7871 2.3131 -0.8782 51 1 5.8652 3.8654 -0.0111 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374175295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:37 Heat of formation + Delta-G solvation = -130.403424 kcal Electronic energy + Delta-G solvation = -31510.711213 eV Core-core repulsion = 27409.405716 eV Total energy + Delta-G solvation = -4101.305497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.97503 -39.90417 -38.73416 -37.81543 -37.22749 -35.70427 -34.94146 -33.39098 -32.38942 -32.35942 -28.67424 -28.08540 -26.22074 -25.92080 -25.33395 -23.87116 -23.34242 -23.01137 -22.10505 -20.39369 -18.55798 -18.26098 -18.09342 -17.69958 -17.36137 -16.95531 -16.85651 -16.49368 -16.26545 -15.81049 -15.62700 -15.34596 -14.94027 -14.67653 -14.61697 -14.33184 -14.23403 -14.17561 -13.71034 -13.62753 -13.56428 -13.27496 -13.15826 -13.05311 -12.98136 -12.86996 -12.67971 -12.63762 -12.47778 -12.43084 -12.36299 -12.21428 -11.90865 -11.86330 -11.53590 -11.41062 -11.38767 -11.26243 -11.04173 -10.98035 -10.54674 -10.50323 -9.07574 -8.19803 -6.27422 1.37718 1.40011 1.45975 1.49802 1.82751 2.19390 2.29494 2.40901 2.60145 3.13660 3.15474 3.45333 3.57783 3.62396 3.81377 3.98734 4.04194 4.13642 4.14375 4.20047 4.33098 4.33984 4.36351 4.42831 4.48838 4.62036 4.62529 4.64830 4.66259 4.75260 4.76621 4.83589 4.90725 4.91806 4.91956 4.95935 4.97110 5.00088 5.08767 5.15181 5.27652 5.36698 5.46500 5.63304 5.67647 5.79312 6.10136 6.21171 6.26380 6.31543 6.83834 7.04567 7.07479 7.40527 8.91029 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012959 B = 0.003203 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.098094 B = 8739.768447 C = 9015.815154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.057 3.943 3 O -0.344 6.344 4 C 0.465 3.535 5 O -0.512 6.512 6 C -0.039 4.039 7 C 0.073 3.927 8 O -0.391 6.391 9 C 0.027 3.973 10 C -0.095 4.095 11 C -0.117 4.117 12 C 0.054 3.946 13 N -0.552 5.552 14 C 0.078 3.922 15 C 0.024 3.976 16 H 0.104 0.896 17 C 0.272 3.728 18 N -0.521 5.521 19 C 0.041 3.959 20 C -0.539 4.539 21 H 0.046 0.954 22 C 0.014 3.986 23 N -0.921 5.921 24 Si 0.946 3.054 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.071 3.929 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.033 0.967 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.039 0.961 48 H 0.001 0.999 49 H 0.265 0.735 50 H 0.070 0.930 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.600 16.512 1.010 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.018 4.018 3 O -0.261 6.261 4 C 0.307 3.693 5 O -0.398 6.398 6 C -0.040 4.040 7 C -0.004 4.004 8 O -0.310 6.310 9 C -0.069 4.069 10 C -0.132 4.132 11 C -0.154 4.154 12 C -0.074 4.074 13 N -0.277 5.277 14 C -0.051 4.051 15 C 0.002 3.998 16 H 0.121 0.879 17 C -0.044 4.044 18 N -0.199 5.199 19 C 0.002 3.998 20 C -0.577 4.577 21 H 0.064 0.936 22 C -0.185 4.185 23 N -0.561 5.561 24 Si 0.772 3.228 25 H -0.189 1.189 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.057 4.057 29 H 0.090 0.910 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.051 0.949 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.019 0.981 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.249 14.167 1.677 27.277 hybrid contribution 1.341 -0.436 -1.106 1.792 sum -21.909 13.730 0.570 25.862 Atomic orbital electron populations 1.21723 0.90086 1.03772 1.03777 1.23033 0.97244 0.80656 1.00839 1.86591 1.24253 1.31363 1.83895 1.23804 0.80568 0.92819 0.72127 1.90793 1.60854 1.43666 1.44531 1.20766 0.95319 0.88714 0.99208 1.22446 0.82651 1.00606 0.94725 1.87970 1.19125 1.78526 1.45352 1.22889 1.00076 0.96192 0.87719 1.21591 1.02100 0.99301 0.90242 1.21634 0.94743 0.99815 0.99242 1.22183 0.95943 0.97359 0.91866 1.61669 1.13367 1.50049 1.02585 1.22004 0.87212 0.97215 0.98626 1.19146 0.96296 0.84440 0.99886 0.87875 1.29252 0.89972 0.94165 0.91015 1.80918 1.12956 1.14096 1.11906 1.18983 0.87752 0.97386 0.95693 1.21505 0.91977 1.26277 1.17925 0.93606 1.25662 0.96519 0.97677 0.98602 1.70020 0.99904 1.44556 1.41584 0.85732 0.77321 0.79392 0.80355 1.18866 1.20674 1.20651 1.21990 0.90883 0.98817 0.93963 0.91020 0.89033 0.91111 0.93346 0.93103 0.88678 0.93348 0.88701 0.92444 0.94302 0.87866 0.90041 0.88464 0.94859 0.91905 0.91388 0.90230 0.90623 0.94272 0.98088 0.92638 0.91128 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 10.29 71.98 0.74 -1.55 16 2 C 0.06 1.43 6.19 71.98 0.45 1.88 16 3 O -0.34 -9.42 8.88 -45.76 -0.41 -9.83 16 4 C 0.46 13.78 5.26 71.23 0.37 14.16 16 5 O -0.51 -19.70 14.99 21.95 0.33 -19.37 16 6 C -0.04 -0.82 0.57 -52.88 -0.03 -0.85 16 7 C 0.07 1.24 4.80 71.98 0.35 1.59 16 8 O -0.39 -7.12 8.77 -132.64 -1.16 -8.28 16 9 C 0.03 0.33 11.01 113.37 1.25 1.57 16 10 C -0.09 -1.60 4.56 30.68 0.14 -1.46 16 11 C -0.12 -2.25 5.84 30.65 0.18 -2.07 16 12 C 0.05 1.13 5.44 86.32 0.47 1.60 16 13 N -0.55 -15.04 3.17 -896.36 -2.84 -17.88 16 14 C 0.08 2.34 4.34 86.30 0.37 2.72 16 15 C 0.02 0.96 2.22 -12.60 -0.03 0.94 16 16 H 0.10 3.96 6.50 -2.39 -0.02 3.95 16 17 C 0.27 12.81 13.66 89.43 1.22 14.03 16 18 N -0.52 -26.88 18.54 20.01 0.37 -26.51 16 19 C 0.04 1.96 4.42 29.85 0.13 2.09 16 20 C -0.54 -29.91 8.60 25.60 0.22 -29.69 16 21 H 0.05 2.59 7.59 -2.91 -0.02 2.56 16 22 C 0.01 0.81 5.46 84.66 0.46 1.28 16 23 N -0.92 -53.60 13.29 21.45 0.28 -53.32 16 24 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 25 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 26 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 27 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 28 C 0.07 1.63 3.58 86.33 0.31 1.94 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.05 1.36 8.13 -2.38 -0.02 1.34 16 33 H 0.05 1.39 8.13 -2.38 -0.02 1.38 16 34 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.48 8.14 -2.38 -0.02 0.47 16 38 H 0.04 0.46 8.14 -2.38 -0.02 0.45 16 39 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 1.46 7.69 -2.39 -0.02 1.44 16 41 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.03 0.86 7.35 -2.38 -0.02 0.84 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 45 H 0.08 1.98 8.06 -2.39 -0.02 1.96 16 46 H 0.08 2.32 7.87 -2.38 -0.02 2.31 16 47 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 49 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.07 1.90 6.36 -2.39 -0.02 1.88 16 51 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -75.76 412.68 6.10 -69.66 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.89 Total: 10.56 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 6.60 Total: 8.16 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -2.18 Total: -97.71 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -1.24 Total: -37.48 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.76 6.10 -69.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374175295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.748 kcal (2) G-P(sol) polarization free energy of solvation -75.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds