Wall clock time and date at job start Tue Mar 31 2020 22:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45202 * 109.47011 * 2 1 4 4 C 1.34228 * 116.99976 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00322 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00220 * 180.02562 * 4 3 2 7 7 C 1.53007 * 109.49963 * 299.91770 * 6 4 3 8 8 O 1.42895 * 109.47102 * 59.99889 * 7 6 4 9 9 C 1.42900 * 114.00119 * 179.97438 * 8 7 6 10 10 C 1.53113 * 109.50285 * 59.99624 * 6 4 3 11 11 C 1.53120 * 109.16302 * 62.28961 * 10 6 4 12 12 C 1.53037 * 109.27495 * 57.65185 * 11 10 6 13 13 N 1.46839 * 109.52571 * 300.82018 * 12 11 10 14 14 C 1.46900 * 111.00322 * 185.84158 * 13 12 11 15 15 C 1.53002 * 109.47214 * 66.15737 * 14 13 12 16 16 H 1.09000 * 109.47370 * 303.69243 * 15 14 13 17 17 C 1.47210 * 109.46630 * 63.69071 * 15 14 13 18 18 N 5.63132 * 155.33257 * 124.64322 * 2 1 3 19 19 C 1.52997 * 109.47179 * 183.68585 * 15 14 13 20 20 C 1.50703 * 109.46826 * 175.00011 * 19 15 14 21 21 H 1.07995 * 119.99876 * 0.02562 * 20 19 15 22 22 C 1.37875 * 119.99907 * 180.02562 * 20 19 15 23 23 N 1.31517 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47088 * 89.99810 * 24 22 20 26 26 H 1.48502 * 109.47114 * 209.99753 * 24 22 20 27 27 H 1.48497 * 109.47083 * 329.99866 * 24 22 20 28 28 C 1.46854 * 111.19989 * 61.74266 * 13 12 11 29 29 H 1.08998 * 109.46997 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46733 * 299.99780 * 1 2 3 31 31 H 1.09002 * 109.47163 * 59.99493 * 1 2 3 32 32 H 1.08990 * 109.47414 * 120.00177 * 2 1 3 33 33 H 1.09000 * 109.47366 * 240.00623 * 2 1 3 34 34 H 1.08999 * 109.46908 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.47143 * 300.00362 * 7 6 4 36 36 H 1.08990 * 109.47135 * 300.00055 * 9 8 7 37 37 H 1.09000 * 109.46752 * 60.00328 * 9 8 7 38 38 H 1.08998 * 109.47241 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.51984 * 182.19725 * 10 6 4 40 40 H 1.08997 * 109.52329 * 302.37967 * 10 6 4 41 41 H 1.09000 * 109.50541 * 177.59235 * 11 10 6 42 42 H 1.08994 * 109.49857 * 297.71179 * 11 10 6 43 43 H 1.09001 * 109.46513 * 60.84001 * 12 11 10 44 44 H 1.09001 * 109.45835 * 180.81807 * 12 11 10 45 45 H 1.09000 * 109.47610 * 186.16470 * 14 13 12 46 46 H 1.09005 * 109.46996 * 306.16065 * 14 13 12 47 47 H 1.08999 * 109.47708 * 295.00203 * 19 15 14 48 48 H 1.09003 * 109.46598 * 55.00763 * 19 15 14 49 49 H 0.97000 * 119.99753 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.46090 * 178.23780 * 28 13 12 51 51 H 1.09005 * 109.45473 * 58.27569 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9375 0.0000 7 6 3.4507 3.6852 -1.2494 8 8 2.0237 3.7603 -1.2508 9 6 1.4787 4.4437 -2.3814 10 6 3.4498 3.6850 1.2505 11 6 3.9742 2.9631 2.4949 12 6 5.5010 2.8832 2.4268 13 7 5.9008 2.1587 1.2137 14 6 7.3534 1.9417 1.1848 15 6 7.7504 0.9946 2.3189 16 1 7.4094 1.4036 3.2700 17 6 7.1283 -0.3214 2.0995 18 7 6.6475 -1.3360 1.9336 19 6 9.2724 0.8411 2.3460 20 6 9.6720 0.0078 3.5365 21 1 8.9160 -0.3744 4.2063 22 6 11.0028 -0.2667 3.7703 23 7 11.9235 0.1992 2.9548 24 14 11.4982 -1.3001 5.2454 25 1 11.5270 -2.7336 4.8584 26 1 12.8464 -0.8856 5.7099 27 1 10.5150 -1.1028 6.3407 28 6 5.4490 2.8582 0.0041 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 3.8672 4.6924 -1.2483 35 1 3.7873 3.1533 -2.1393 36 1 1.8547 5.4665 -2.4035 37 1 1.7745 3.9279 -3.2949 38 1 0.3913 4.4574 -2.3082 39 1 3.8344 4.7048 1.2318 40 1 2.3603 3.7061 1.2736 41 1 3.6782 3.5145 3.3874 42 1 3.5584 1.9563 2.5338 43 1 5.9167 3.8905 2.4018 44 1 5.8766 2.3569 3.3043 45 1 7.6362 1.5019 0.2283 46 1 7.8659 2.8954 1.3117 47 1 9.6045 0.3504 1.4311 48 1 9.7355 1.8251 2.4195 49 1 12.8597 0.0058 3.1191 50 1 5.7870 2.3140 -0.8777 51 1 5.8650 3.8657 -0.0094 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374175296.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:40 Heat of formation + Delta-G solvation = -110.396965 kcal Electronic energy + Delta-G solvation = -31189.377143 eV Core-core repulsion = 27088.939191 eV Total energy + Delta-G solvation = -4100.437952 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.99054 -38.88076 -37.96213 -36.51259 -35.97555 -34.23068 -33.23637 -32.02755 -31.58844 -31.12579 -27.57311 -26.86049 -25.63269 -24.52396 -24.28083 -22.68321 -22.27801 -21.68141 -20.96579 -19.42208 -17.11345 -16.90934 -16.76079 -16.47928 -16.41708 -16.13640 -15.80324 -15.57973 -14.89049 -14.52658 -14.43758 -14.22376 -14.08282 -13.75786 -13.43430 -13.18176 -13.01095 -12.82817 -12.67952 -12.47385 -12.24108 -12.20434 -12.12357 -11.82455 -11.79083 -11.65269 -11.47251 -11.43387 -11.16422 -11.02335 -10.91971 -10.75757 -10.57464 -10.51501 -10.42315 -10.36532 -10.07324 -9.98955 -9.84091 -9.46857 -9.17131 -8.41732 -8.07447 -6.05871 -4.08372 2.49211 2.75085 3.31506 3.32542 3.38909 3.42532 3.92681 4.02201 4.10862 4.38593 4.43740 4.45296 4.61824 4.87326 4.88678 4.93333 4.97142 5.00353 5.03861 5.08424 5.11989 5.15129 5.20733 5.25020 5.32491 5.37466 5.39320 5.51638 5.54246 5.58364 5.62419 5.70073 5.73149 5.80829 5.85781 5.87972 5.93861 6.05161 6.14208 6.24519 6.45640 6.58086 6.67222 6.81867 7.20729 7.25840 7.47297 7.59168 7.90005 8.09070 8.28345 8.78911 8.96780 9.56712 11.05149 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.002808 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.357107 B = 9970.269255 C =10713.225258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.345 6.345 4 C 0.469 3.531 5 O -0.469 6.469 6 C -0.041 4.041 7 C 0.072 3.928 8 O -0.370 6.370 9 C 0.032 3.968 10 C -0.103 4.103 11 C -0.121 4.121 12 C 0.046 3.954 13 N -0.528 5.528 14 C 0.067 3.933 15 C 0.012 3.988 16 H 0.097 0.903 17 C 0.254 3.746 18 N -0.474 5.474 19 C 0.032 3.968 20 C -0.523 4.523 21 H 0.056 0.944 22 C 0.062 3.938 23 N -0.893 5.893 24 Si 0.891 3.109 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.078 3.922 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.039 0.961 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.053 0.947 47 H 0.026 0.974 48 H 0.036 0.964 49 H 0.262 0.738 50 H 0.084 0.916 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 13.324 -9.245 27.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.013 4.013 3 O -0.262 6.262 4 C 0.309 3.691 5 O -0.353 6.353 6 C -0.043 4.043 7 C -0.006 4.006 8 O -0.289 6.289 9 C -0.065 4.065 10 C -0.141 4.141 11 C -0.159 4.159 12 C -0.081 4.081 13 N -0.252 5.252 14 C -0.061 4.061 15 C -0.010 4.010 16 H 0.115 0.885 17 C -0.063 4.063 18 N -0.150 5.150 19 C -0.007 4.007 20 C -0.561 4.561 21 H 0.075 0.925 22 C -0.140 4.140 23 N -0.531 5.531 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.211 1.211 27 H -0.198 1.198 28 C -0.050 4.050 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.102 0.898 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -22.520 10.920 -9.362 26.722 hybrid contribution 1.166 0.491 0.543 1.377 sum -21.354 11.411 -8.819 25.768 Atomic orbital electron populations 1.21748 0.93028 1.02450 1.03226 1.22910 0.94984 0.81133 1.02285 1.86576 1.24446 1.30918 1.84251 1.23002 0.80679 0.91768 0.73622 1.90790 1.60024 1.41985 1.42463 1.20672 0.95963 0.90389 0.97265 1.22429 0.82550 0.99449 0.96139 1.88017 1.18951 1.77687 1.44214 1.22732 0.99597 0.95533 0.88626 1.21603 1.02256 0.98376 0.91869 1.21658 0.95624 1.01139 0.97503 1.22248 0.95228 0.96630 0.94042 1.61820 1.14568 1.47972 1.00835 1.22186 0.85440 0.98461 0.99992 1.19202 0.99006 0.84428 0.98324 0.88484 1.28656 0.91193 0.94287 0.92163 1.80909 1.11624 1.12866 1.09618 1.19163 0.84791 0.98449 0.98278 1.21145 0.92220 1.32578 1.10198 0.92543 1.24948 0.96651 0.95823 0.96565 1.69942 1.00776 1.45278 1.37153 0.86602 0.77832 0.80706 0.82992 1.20654 1.21140 1.19766 1.21826 0.90369 0.97633 0.95172 0.90718 0.91667 0.91724 0.91561 0.91838 0.91762 0.92731 0.94161 0.94267 0.89559 0.90826 0.89762 0.90785 0.91532 0.94392 0.89672 0.90151 0.92934 0.95597 0.94557 0.92861 0.89799 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 37.16 0.38 -0.87 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.34 -4.57 8.88 -45.21 -0.40 -4.97 16 4 C 0.47 6.74 5.26 36.01 0.19 6.93 16 5 O -0.47 -8.53 14.99 -18.75 -0.28 -8.81 16 6 C -0.04 -0.46 0.57 -155.58 -0.09 -0.55 16 7 C 0.07 0.65 4.80 37.16 0.18 0.82 16 8 O -0.37 -3.57 8.77 -52.32 -0.46 -4.03 16 9 C 0.03 0.21 11.01 101.05 1.11 1.32 16 10 C -0.10 -1.03 4.56 -26.61 -0.12 -1.15 16 11 C -0.12 -1.36 5.84 -26.65 -0.16 -1.52 16 12 C 0.05 0.57 5.30 -3.84 -0.02 0.55 16 13 N -0.53 -7.57 3.18 -234.67 -0.75 -8.32 16 14 C 0.07 1.05 4.34 -3.82 -0.02 1.04 16 15 C 0.01 0.24 2.12 -93.40 -0.20 0.04 16 16 H 0.10 1.77 6.28 -51.93 -0.33 1.44 16 17 C 0.25 5.74 13.63 -20.79 -0.28 5.45 16 18 N -0.47 -11.68 18.53 42.11 0.78 -10.89 16 19 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 20 C -0.52 -14.23 8.60 -34.44 -0.30 -14.52 16 21 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 24 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 28 C 0.08 0.93 3.73 -3.83 -0.01 0.91 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.06 0.77 8.13 -51.93 -0.42 0.34 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.91 7.35 -51.93 -0.38 0.53 16 43 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 1.14 6.16 -51.93 -0.32 0.82 16 45 H 0.08 1.30 7.98 -51.93 -0.41 0.88 16 46 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 50 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 51 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 412.32 15.07 6.21 6.21 Total: -1.00 -34.10 412.32 -7.48 -41.58 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -8.97 Total: -3.95 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 0.68 Total: 1.68 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.77 Total: -44.35 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -1.14 Total: -17.81 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.10 -7.48 -41.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374175296.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.819 kcal (2) G-P(sol) polarization free energy of solvation -34.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds