Wall clock time and date at job start Tue Mar 31 2020 22:24:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31000 * 1
3 3 C 1.50696 * 119.99815 * 2 1
4 4 N 1.46898 * 109.47521 * 124.22293 * 3 2 1
5 5 C 1.46904 * 110.99598 * 60.35615 * 4 3 2
6 6 C 1.50700 * 109.47020 * 66.05286 * 5 4 3
7 7 H 1.07999 * 119.99919 * 359.97438 * 6 5 4
8 8 C 1.37873 * 120.00006 * 180.02562 * 6 5 4
9 9 N 1.31513 * 120.00323 * 359.97438 * 8 6 5
10 10 Si 1.86800 * 120.00162 * 179.97438 * 8 6 5
11 11 H 1.48502 * 109.47118 * 59.99896 * 10 8 6
12 12 H 1.48500 * 109.47244 * 179.97438 * 10 8 6
13 13 H 1.48502 * 109.47143 * 300.00244 * 10 8 6
14 14 C 1.46897 * 110.99799 * 296.41073 * 4 3 2
15 15 C 1.50701 * 109.46937 * 287.22037 * 14 4 3
16 16 O 1.21279 * 119.99942 * 354.26097 * 15 14 4
17 17 N 1.34778 * 119.99961 * 174.26154 * 15 14 4
18 18 C 1.46924 * 120.63273 * 359.71848 * 17 15 14
19 19 C 1.52758 * 109.00848 * 233.58506 * 18 17 15
20 20 C 1.53042 * 109.38561 * 305.58690 * 19 18 17
21 21 C 1.50699 * 109.45074 * 181.25462 * 20 19 18
22 22 O 1.20832 * 119.99874 * 239.94414 * 21 20 19
23 23 O 1.34231 * 119.99947 * 59.93577 * 21 20 19
24 24 C 1.45198 * 116.99729 * 180.02562 * 23 21 20
25 25 C 1.53006 * 109.47048 * 180.02562 * 24 23 21
26 26 C 1.53038 * 109.53465 * 61.24124 * 20 19 18
27 27 C 1.46929 * 120.62729 * 180.02562 * 17 15 14
28 28 H 1.08000 * 120.00502 * 359.97438 * 1 2 3
29 29 H 1.08005 * 119.99588 * 179.97438 * 1 2 3
30 30 H 1.08000 * 120.00062 * 179.97438 * 2 1 3
31 31 H 1.09009 * 109.47152 * 4.22255 * 3 2 1
32 32 H 1.09001 * 109.47333 * 244.22392 * 3 2 1
33 33 H 1.09001 * 109.47015 * 186.04885 * 5 4 3
34 34 H 1.09002 * 109.47475 * 306.04932 * 5 4 3
35 35 H 0.96994 * 120.00567 * 180.02562 * 9 8 6
36 36 H 1.08995 * 109.47735 * 47.21957 * 14 4 3
37 37 H 1.09000 * 109.47422 * 167.22125 * 14 4 3
38 38 H 1.08999 * 109.58342 * 353.42434 * 18 17 15
39 39 H 1.08999 * 109.58732 * 113.84578 * 18 17 15
40 40 H 1.09005 * 109.56305 * 185.55613 * 19 18 17
41 41 H 1.08997 * 109.35788 * 65.50253 * 19 18 17
42 42 H 1.08998 * 109.46073 * 301.22137 * 20 19 18
43 43 H 1.09007 * 109.47353 * 299.99833 * 24 23 21
44 44 H 1.08993 * 109.47656 * 60.00237 * 24 23 21
45 45 H 1.08998 * 109.46698 * 300.00380 * 25 24 23
46 46 H 1.09005 * 109.46907 * 59.99634 * 25 24 23
47 47 H 1.08990 * 109.47228 * 179.97438 * 25 24 23
48 48 H 1.09008 * 109.49700 * 178.68079 * 26 20 19
49 49 H 1.09000 * 109.52774 * 58.60355 * 26 20 19
50 50 H 1.09003 * 109.58871 * 246.15274 * 27 17 15
51 51 H 1.09002 * 109.59182 * 6.44191 * 27 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0634 1.3051 0.0000
4 7 2.9829 1.3398 1.1451
5 6 3.9563 0.2420 1.0721
6 6 4.8578 0.4484 -0.1178
7 1 4.7210 1.3087 -0.7561
8 6 5.8565 -0.4617 -0.3921
9 7 6.0228 -1.5097 0.3849
10 14 6.9735 -0.2063 -1.8674
11 1 7.6936 1.0847 -1.7254
12 1 7.9576 -1.3160 -1.9412
13 1 6.1577 -0.1841 -3.1080
14 6 2.2443 1.3048 2.4144
15 6 1.5718 2.6342 2.6412
16 8 1.7791 3.5561 1.8808
17 7 0.7402 2.7988 3.6889
18 6 0.4745 1.6897 4.6152
19 6 -1.0352 1.4835 4.7244
20 6 -1.7012 2.8042 5.1173
21 6 -3.1872 2.5952 5.2555
22 8 -3.9525 3.2216 4.5613
23 8 -3.6606 1.7132 6.1497
24 6 -5.1027 1.5633 6.2279
25 6 -5.4503 0.5231 7.2948
26 6 -1.4323 3.8542 4.0369
27 6 0.0769 4.0888 3.9227
28 1 -0.5401 0.9353 0.0004
29 1 -0.5400 -0.9354 -0.0004
30 1 1.8500 -0.9353 0.0004
31 1 1.3575 2.1322 0.0757
32 1 2.6321 1.3964 -0.9254
33 1 4.5548 0.2259 1.9829
34 1 3.4281 -0.7057 0.9677
35 1 6.7256 -2.1497 0.1922
36 1 1.4905 0.5185 2.3747
37 1 2.9364 1.1035 3.2321
38 1 0.9400 0.7792 4.2380
39 1 0.8798 1.9295 5.5982
40 1 -1.2467 0.7297 5.4829
41 1 -1.4250 1.1515 3.7622
42 1 -1.2929 3.1482 6.0676
43 1 -5.5536 2.5197 6.4929
44 1 -5.4869 1.2358 5.2619
45 1 -4.9993 -0.4333 7.0302
46 1 -5.0661 0.8510 8.2607
47 1 -6.5328 0.4109 7.3538
48 1 -1.9264 4.7878 4.3058
49 1 -1.8185 3.5005 3.0809
50 1 0.4490 4.5287 4.8480
51 1 0.2821 4.7615 3.0899
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000428873906.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:24:24
Heat of formation + Delta-G solvation = -95.788333 kcal
Electronic energy + Delta-G solvation = -30263.720800 eV
Core-core repulsion = 26163.916326 eV
Total energy + Delta-G solvation = -4099.804474 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-41.09042 -39.94005 -37.86869 -36.94748 -36.42226 -33.33093 -32.91889 -32.25521
-31.94530 -31.38977 -28.41169 -26.82684 -26.23932 -24.31672 -23.57540 -23.32209
-22.11831 -21.23318 -20.53038 -19.26996 -18.55718 -18.05512 -17.17877 -16.94117
-16.40710 -16.24803 -15.66437 -15.59072 -14.97658 -14.74733 -14.71904 -14.28676
-14.22041 -14.00859 -13.73831 -13.55679 -13.28711 -13.19310 -12.95514 -12.66229
-12.58388 -12.31562 -12.18821 -12.08889 -11.93132 -11.55546 -11.34477 -11.24015
-11.13768 -10.98732 -10.90857 -10.88589 -10.81214 -10.63566 -10.60737 -10.49121
-9.92683 -9.54109 -9.13784 -8.86262 -8.63121 -8.42931 -7.22320 -6.02736
-4.02984 1.86953 2.27661 2.71790 2.96199 3.03716 3.35992 3.39206
3.43661 4.14575 4.30655 4.35491 4.43981 4.50089 4.55333 4.70731
4.76268 4.83618 4.90212 5.01777 5.07824 5.17612 5.25495 5.32145
5.33494 5.33587 5.37800 5.46687 5.51426 5.54287 5.55990 5.70643
5.73653 5.78318 5.82103 5.84154 5.96810 6.11103 6.12782 6.41136
6.54052 6.70999 7.03586 7.10114 7.32165 7.33409 7.41723 7.47078
7.80866 8.04591 8.16130 8.47545 8.57342 9.04313 9.60988 11.08065
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.020244 B = 0.002320 C = 0.002251
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1382.784457 B =12064.438042 C =12433.225557
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.162 4.162
3 C 0.087 3.913
4 N -0.511 5.511
5 C 0.191 3.809
6 C -0.504 4.504
7 H 0.064 0.936
8 C 0.056 3.944
9 N -0.900 5.900
10 Si 0.898 3.102
11 H -0.276 1.276
12 H -0.289 1.289
13 H -0.277 1.277
14 C 0.035 3.965
15 C 0.519 3.481
16 O -0.515 6.515
17 N -0.625 5.625
18 C 0.110 3.890
19 C -0.127 4.127
20 C -0.078 4.078
21 C 0.466 3.534
22 O -0.506 6.506
23 O -0.357 6.357
24 C 0.061 3.939
25 C -0.153 4.153
26 C -0.118 4.118
27 C 0.114 3.886
28 H 0.087 0.913
29 H 0.087 0.913
30 H 0.114 0.886
31 H 0.066 0.934
32 H 0.092 0.908
33 H 0.029 0.971
34 H 0.000 1.000
35 H 0.261 0.739
36 H 0.056 0.944
37 H 0.096 0.904
38 H 0.095 0.905
39 H 0.073 0.927
40 H 0.090 0.910
41 H 0.075 0.925
42 H 0.112 0.888
43 H 0.069 0.931
44 H 0.070 0.930
45 H 0.068 0.932
46 H 0.067 0.933
47 H 0.079 0.921
48 H 0.082 0.918
49 H 0.077 0.923
50 H 0.066 0.934
51 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.808 4.224 15.719 26.417
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.253 4.253
2 C -0.181 4.181
3 C -0.040 4.040
4 N -0.233 5.233
5 C 0.067 3.933
6 C -0.542 4.542
7 H 0.082 0.918
8 C -0.145 4.145
9 N -0.540 5.540
10 Si 0.726 3.274
11 H -0.201 1.201
12 H -0.214 1.214
13 H -0.203 1.203
14 C -0.096 4.096
15 C 0.308 3.692
16 O -0.388 6.388
17 N -0.362 5.362
18 C -0.013 4.013
19 C -0.166 4.166
20 C -0.097 4.097
21 C 0.309 3.691
22 O -0.393 6.393
23 O -0.274 6.274
24 C -0.013 4.013
25 C -0.210 4.210
26 C -0.156 4.156
27 C -0.008 4.008
28 H 0.105 0.895
29 H 0.106 0.894
30 H 0.132 0.868
31 H 0.084 0.916
32 H 0.110 0.890
33 H 0.047 0.953
34 H 0.017 0.983
35 H 0.071 0.929
36 H 0.074 0.926
37 H 0.115 0.885
38 H 0.113 0.887
39 H 0.091 0.909
40 H 0.108 0.892
41 H 0.094 0.906
42 H 0.129 0.871
43 H 0.087 0.913
44 H 0.088 0.912
45 H 0.087 0.913
46 H 0.086 0.914
47 H 0.098 0.902
48 H 0.101 0.899
49 H 0.095 0.905
50 H 0.085 0.915
51 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -20.519 5.197 15.085 25.992
hybrid contribution -0.133 -0.867 -0.612 1.070
sum -20.652 4.330 14.472 25.587
Atomic orbital electron populations
1.23685 0.95989 1.00677 1.04910 1.24019 0.96187 1.01792 0.96135
1.21320 0.94153 0.92316 0.96250 1.62093 1.14235 1.48825 0.98185
1.19829 0.89103 0.86268 0.98146 1.21096 1.14253 1.08297 1.10601
0.91797 1.24955 0.97515 0.95139 0.96924 1.69933 1.33171 1.12552
1.38348 0.86560 0.80338 0.77656 0.82877 1.20133 1.21438 1.20273
1.21995 0.97897 0.92825 0.96916 1.21032 0.77916 0.91042 0.79230
1.90662 1.60910 1.42735 1.44501 1.48236 1.47061 1.12309 1.28640
1.21616 0.94620 0.90888 0.94191 1.21882 0.95914 0.95377 1.03409
1.21115 0.87317 0.98849 1.02389 1.23816 0.92492 0.76150 0.76627
1.90678 1.59620 1.45938 1.43090 1.86510 1.26368 1.57923 1.56619
1.23040 0.77282 1.00374 1.00624 1.21810 1.02013 0.98739 0.98418
1.21852 0.96730 0.98465 0.98596 1.21490 0.90226 0.86329 1.02788
0.89453 0.89447 0.86763 0.91588 0.89001 0.95265 0.98276 0.92911
0.92596 0.88546 0.88688 0.90887 0.89151 0.90644 0.87051 0.91295
0.91203 0.91316 0.91436 0.90225 0.89899 0.90452 0.91540 0.88308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -3.32 14.32 29.01 0.42 -2.91 16
2 C -0.16 -2.95 7.51 -36.03 -0.27 -3.23 16
3 C 0.09 1.78 5.32 -4.98 -0.03 1.76 16
4 N -0.51 -11.10 4.28 -238.96 -1.02 -12.13 16
5 C 0.19 4.80 4.52 -4.97 -0.02 4.77 16
6 C -0.50 -14.00 8.51 -34.44 -0.29 -14.29 16
7 H 0.06 1.80 7.10 -52.49 -0.37 1.42 16
8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16
9 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16
10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16
11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16
12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16
13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
14 C 0.04 0.61 3.77 -4.98 -0.02 0.59 16
15 C 0.52 8.61 7.30 -10.98 -0.08 8.53 16
16 O -0.51 -10.51 14.61 5.56 0.08 -10.43 16
17 N -0.63 -7.59 2.98 -173.05 -0.52 -8.10 16
18 C 0.11 0.97 6.31 -3.94 -0.02 0.94 16
19 C -0.13 -0.99 5.28 -26.83 -0.14 -1.13 16
20 C -0.08 -0.62 2.59 -91.73 -0.24 -0.86 16
21 C 0.47 4.61 7.26 36.01 0.26 4.87 16
22 O -0.51 -6.46 15.73 -18.75 -0.29 -6.75 16
23 O -0.36 -3.14 10.10 -39.26 -0.40 -3.54 16
24 C 0.06 0.43 6.19 37.16 0.23 0.66 16
25 C -0.15 -0.71 10.29 37.16 0.38 -0.33 16
26 C -0.12 -1.11 4.65 -26.63 -0.12 -1.23 16
27 C 0.11 1.20 6.43 -3.73 -0.02 1.18 16
28 H 0.09 1.31 7.84 -52.49 -0.41 0.90 16
29 H 0.09 1.21 8.06 -52.48 -0.42 0.78 16
30 H 0.11 2.29 6.68 -52.49 -0.35 1.94 16
31 H 0.07 1.32 6.29 -51.92 -0.33 1.00 16
32 H 0.09 2.04 6.85 -51.93 -0.36 1.69 16
33 H 0.03 0.78 7.85 -51.93 -0.41 0.37 16
34 H 0.00 -0.01 6.16 -51.93 -0.32 -0.33 16
35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16
36 H 0.06 0.89 6.08 -51.93 -0.32 0.57 16
37 H 0.10 1.58 7.78 -51.93 -0.40 1.17 16
38 H 0.09 0.85 5.88 -51.93 -0.31 0.54 16
39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
40 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16
41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
42 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16
43 H 0.07 0.48 8.13 -51.92 -0.42 0.05 16
44 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16
45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16
46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
47 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16
48 H 0.08 0.72 8.07 -51.92 -0.42 0.30 16
49 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16
50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
51 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16
LS Contribution 406.99 15.07 6.13 6.13
Total: -1.00 -33.53 406.99 -8.93 -42.46
By element:
Atomic # 1 Polarization: 8.86 SS G_CDS: -8.56 Total: 0.30 kcal
Atomic # 6 Polarization: 0.86 SS G_CDS: -0.07 Total: 0.78 kcal
Atomic # 7 Polarization: -44.85 SS G_CDS: -0.80 Total: -45.65 kcal
Atomic # 8 Polarization: -20.11 SS G_CDS: -0.61 Total: -20.72 kcal
Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal
Total LS contribution 6.13 Total: 6.13 kcal
Total: -33.53 -8.93 -42.46 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000428873906.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.327 kcal
(2) G-P(sol) polarization free energy of solvation -33.532 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.860 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.788 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds