Wall clock time and date at job start Tue Mar 31 2020 22:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 119.99815 * 2 1 4 4 N 1.46898 * 109.47521 * 124.22293 * 3 2 1 5 5 C 1.46904 * 110.99598 * 60.35615 * 4 3 2 6 6 C 1.50700 * 109.47020 * 66.05286 * 5 4 3 7 7 H 1.07999 * 119.99919 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00006 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00323 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00162 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47118 * 59.99896 * 10 8 6 12 12 H 1.48500 * 109.47244 * 179.97438 * 10 8 6 13 13 H 1.48502 * 109.47143 * 300.00244 * 10 8 6 14 14 C 1.46897 * 110.99799 * 296.41073 * 4 3 2 15 15 C 1.50701 * 109.46937 * 287.22037 * 14 4 3 16 16 O 1.21279 * 119.99942 * 354.26097 * 15 14 4 17 17 N 1.34778 * 119.99961 * 174.26154 * 15 14 4 18 18 C 1.46924 * 120.63273 * 359.71848 * 17 15 14 19 19 C 1.52758 * 109.00848 * 233.58506 * 18 17 15 20 20 C 1.53042 * 109.38561 * 305.58690 * 19 18 17 21 21 C 1.50699 * 109.45074 * 181.25462 * 20 19 18 22 22 O 1.20832 * 119.99874 * 239.94414 * 21 20 19 23 23 O 1.34231 * 119.99947 * 59.93577 * 21 20 19 24 24 C 1.45198 * 116.99729 * 180.02562 * 23 21 20 25 25 C 1.53006 * 109.47048 * 180.02562 * 24 23 21 26 26 C 1.53038 * 109.53465 * 61.24124 * 20 19 18 27 27 C 1.46929 * 120.62729 * 180.02562 * 17 15 14 28 28 H 1.08000 * 120.00502 * 359.97438 * 1 2 3 29 29 H 1.08005 * 119.99588 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00062 * 179.97438 * 2 1 3 31 31 H 1.09009 * 109.47152 * 4.22255 * 3 2 1 32 32 H 1.09001 * 109.47333 * 244.22392 * 3 2 1 33 33 H 1.09001 * 109.47015 * 186.04885 * 5 4 3 34 34 H 1.09002 * 109.47475 * 306.04932 * 5 4 3 35 35 H 0.96994 * 120.00567 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47735 * 47.21957 * 14 4 3 37 37 H 1.09000 * 109.47422 * 167.22125 * 14 4 3 38 38 H 1.08999 * 109.58342 * 353.42434 * 18 17 15 39 39 H 1.08999 * 109.58732 * 113.84578 * 18 17 15 40 40 H 1.09005 * 109.56305 * 185.55613 * 19 18 17 41 41 H 1.08997 * 109.35788 * 65.50253 * 19 18 17 42 42 H 1.08998 * 109.46073 * 301.22137 * 20 19 18 43 43 H 1.09007 * 109.47353 * 299.99833 * 24 23 21 44 44 H 1.08993 * 109.47656 * 60.00237 * 24 23 21 45 45 H 1.08998 * 109.46698 * 300.00380 * 25 24 23 46 46 H 1.09005 * 109.46907 * 59.99634 * 25 24 23 47 47 H 1.08990 * 109.47228 * 179.97438 * 25 24 23 48 48 H 1.09008 * 109.49700 * 178.68079 * 26 20 19 49 49 H 1.09000 * 109.52774 * 58.60355 * 26 20 19 50 50 H 1.09003 * 109.58871 * 246.15274 * 27 17 15 51 51 H 1.09002 * 109.59182 * 6.44191 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9829 1.3398 1.1451 5 6 3.9563 0.2420 1.0721 6 6 4.8578 0.4484 -0.1178 7 1 4.7210 1.3087 -0.7561 8 6 5.8565 -0.4617 -0.3921 9 7 6.0228 -1.5097 0.3849 10 14 6.9735 -0.2063 -1.8674 11 1 7.6936 1.0847 -1.7254 12 1 7.9576 -1.3160 -1.9412 13 1 6.1577 -0.1841 -3.1080 14 6 2.2443 1.3048 2.4144 15 6 1.5718 2.6342 2.6412 16 8 1.7791 3.5561 1.8808 17 7 0.7402 2.7988 3.6889 18 6 0.4745 1.6897 4.6152 19 6 -1.0352 1.4835 4.7244 20 6 -1.7012 2.8042 5.1173 21 6 -3.1872 2.5952 5.2555 22 8 -3.9525 3.2216 4.5613 23 8 -3.6606 1.7132 6.1497 24 6 -5.1027 1.5633 6.2279 25 6 -5.4503 0.5231 7.2948 26 6 -1.4323 3.8542 4.0369 27 6 0.0769 4.0888 3.9227 28 1 -0.5401 0.9353 0.0004 29 1 -0.5400 -0.9354 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3575 2.1322 0.0757 32 1 2.6321 1.3964 -0.9254 33 1 4.5548 0.2259 1.9829 34 1 3.4281 -0.7057 0.9677 35 1 6.7256 -2.1497 0.1922 36 1 1.4905 0.5185 2.3747 37 1 2.9364 1.1035 3.2321 38 1 0.9400 0.7792 4.2380 39 1 0.8798 1.9295 5.5982 40 1 -1.2467 0.7297 5.4829 41 1 -1.4250 1.1515 3.7622 42 1 -1.2929 3.1482 6.0676 43 1 -5.5536 2.5197 6.4929 44 1 -5.4869 1.2358 5.2619 45 1 -4.9993 -0.4333 7.0302 46 1 -5.0661 0.8510 8.2607 47 1 -6.5328 0.4109 7.3538 48 1 -1.9264 4.7878 4.3058 49 1 -1.8185 3.5005 3.0809 50 1 0.4490 4.5287 4.8480 51 1 0.2821 4.7615 3.0899 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428873906.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:24 Heat of formation + Delta-G solvation = -95.788333 kcal Electronic energy + Delta-G solvation = -30263.720800 eV Core-core repulsion = 26163.916326 eV Total energy + Delta-G solvation = -4099.804474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09042 -39.94005 -37.86869 -36.94748 -36.42226 -33.33093 -32.91889 -32.25521 -31.94530 -31.38977 -28.41169 -26.82684 -26.23932 -24.31672 -23.57540 -23.32209 -22.11831 -21.23318 -20.53038 -19.26996 -18.55718 -18.05512 -17.17877 -16.94117 -16.40710 -16.24803 -15.66437 -15.59072 -14.97658 -14.74733 -14.71904 -14.28676 -14.22041 -14.00859 -13.73831 -13.55679 -13.28711 -13.19310 -12.95514 -12.66229 -12.58388 -12.31562 -12.18821 -12.08889 -11.93132 -11.55546 -11.34477 -11.24015 -11.13768 -10.98732 -10.90857 -10.88589 -10.81214 -10.63566 -10.60737 -10.49121 -9.92683 -9.54109 -9.13784 -8.86262 -8.63121 -8.42931 -7.22320 -6.02736 -4.02984 1.86953 2.27661 2.71790 2.96199 3.03716 3.35992 3.39206 3.43661 4.14575 4.30655 4.35491 4.43981 4.50089 4.55333 4.70731 4.76268 4.83618 4.90212 5.01777 5.07824 5.17612 5.25495 5.32145 5.33494 5.33587 5.37800 5.46687 5.51426 5.54287 5.55990 5.70643 5.73653 5.78318 5.82103 5.84154 5.96810 6.11103 6.12782 6.41136 6.54052 6.70999 7.03586 7.10114 7.32165 7.33409 7.41723 7.47078 7.80866 8.04591 8.16130 8.47545 8.57342 9.04313 9.60988 11.08065 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020244 B = 0.002320 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.784457 B =12064.438042 C =12433.225557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.162 4.162 3 C 0.087 3.913 4 N -0.511 5.511 5 C 0.191 3.809 6 C -0.504 4.504 7 H 0.064 0.936 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.035 3.965 15 C 0.519 3.481 16 O -0.515 6.515 17 N -0.625 5.625 18 C 0.110 3.890 19 C -0.127 4.127 20 C -0.078 4.078 21 C 0.466 3.534 22 O -0.506 6.506 23 O -0.357 6.357 24 C 0.061 3.939 25 C -0.153 4.153 26 C -0.118 4.118 27 C 0.114 3.886 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.029 0.971 34 H 0.000 1.000 35 H 0.261 0.739 36 H 0.056 0.944 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.066 0.934 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.808 4.224 15.719 26.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.181 4.181 3 C -0.040 4.040 4 N -0.233 5.233 5 C 0.067 3.933 6 C -0.542 4.542 7 H 0.082 0.918 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.726 3.274 11 H -0.201 1.201 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.096 4.096 15 C 0.308 3.692 16 O -0.388 6.388 17 N -0.362 5.362 18 C -0.013 4.013 19 C -0.166 4.166 20 C -0.097 4.097 21 C 0.309 3.691 22 O -0.393 6.393 23 O -0.274 6.274 24 C -0.013 4.013 25 C -0.210 4.210 26 C -0.156 4.156 27 C -0.008 4.008 28 H 0.105 0.895 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.047 0.953 34 H 0.017 0.983 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.095 0.905 50 H 0.085 0.915 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.519 5.197 15.085 25.992 hybrid contribution -0.133 -0.867 -0.612 1.070 sum -20.652 4.330 14.472 25.587 Atomic orbital electron populations 1.23685 0.95989 1.00677 1.04910 1.24019 0.96187 1.01792 0.96135 1.21320 0.94153 0.92316 0.96250 1.62093 1.14235 1.48825 0.98185 1.19829 0.89103 0.86268 0.98146 1.21096 1.14253 1.08297 1.10601 0.91797 1.24955 0.97515 0.95139 0.96924 1.69933 1.33171 1.12552 1.38348 0.86560 0.80338 0.77656 0.82877 1.20133 1.21438 1.20273 1.21995 0.97897 0.92825 0.96916 1.21032 0.77916 0.91042 0.79230 1.90662 1.60910 1.42735 1.44501 1.48236 1.47061 1.12309 1.28640 1.21616 0.94620 0.90888 0.94191 1.21882 0.95914 0.95377 1.03409 1.21115 0.87317 0.98849 1.02389 1.23816 0.92492 0.76150 0.76627 1.90678 1.59620 1.45938 1.43090 1.86510 1.26368 1.57923 1.56619 1.23040 0.77282 1.00374 1.00624 1.21810 1.02013 0.98739 0.98418 1.21852 0.96730 0.98465 0.98596 1.21490 0.90226 0.86329 1.02788 0.89453 0.89447 0.86763 0.91588 0.89001 0.95265 0.98276 0.92911 0.92596 0.88546 0.88688 0.90887 0.89151 0.90644 0.87051 0.91295 0.91203 0.91316 0.91436 0.90225 0.89899 0.90452 0.91540 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.32 14.32 29.01 0.42 -2.91 16 2 C -0.16 -2.95 7.51 -36.03 -0.27 -3.23 16 3 C 0.09 1.78 5.32 -4.98 -0.03 1.76 16 4 N -0.51 -11.10 4.28 -238.96 -1.02 -12.13 16 5 C 0.19 4.80 4.52 -4.97 -0.02 4.77 16 6 C -0.50 -14.00 8.51 -34.44 -0.29 -14.29 16 7 H 0.06 1.80 7.10 -52.49 -0.37 1.42 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.04 0.61 3.77 -4.98 -0.02 0.59 16 15 C 0.52 8.61 7.30 -10.98 -0.08 8.53 16 16 O -0.51 -10.51 14.61 5.56 0.08 -10.43 16 17 N -0.63 -7.59 2.98 -173.05 -0.52 -8.10 16 18 C 0.11 0.97 6.31 -3.94 -0.02 0.94 16 19 C -0.13 -0.99 5.28 -26.83 -0.14 -1.13 16 20 C -0.08 -0.62 2.59 -91.73 -0.24 -0.86 16 21 C 0.47 4.61 7.26 36.01 0.26 4.87 16 22 O -0.51 -6.46 15.73 -18.75 -0.29 -6.75 16 23 O -0.36 -3.14 10.10 -39.26 -0.40 -3.54 16 24 C 0.06 0.43 6.19 37.16 0.23 0.66 16 25 C -0.15 -0.71 10.29 37.16 0.38 -0.33 16 26 C -0.12 -1.11 4.65 -26.63 -0.12 -1.23 16 27 C 0.11 1.20 6.43 -3.73 -0.02 1.18 16 28 H 0.09 1.31 7.84 -52.49 -0.41 0.90 16 29 H 0.09 1.21 8.06 -52.48 -0.42 0.78 16 30 H 0.11 2.29 6.68 -52.49 -0.35 1.94 16 31 H 0.07 1.32 6.29 -51.92 -0.33 1.00 16 32 H 0.09 2.04 6.85 -51.93 -0.36 1.69 16 33 H 0.03 0.78 7.85 -51.93 -0.41 0.37 16 34 H 0.00 -0.01 6.16 -51.93 -0.32 -0.33 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.06 0.89 6.08 -51.93 -0.32 0.57 16 37 H 0.10 1.58 7.78 -51.93 -0.40 1.17 16 38 H 0.09 0.85 5.88 -51.93 -0.31 0.54 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.56 8.08 -51.93 -0.42 0.14 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.48 8.13 -51.92 -0.42 0.05 16 44 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 48 H 0.08 0.72 8.07 -51.92 -0.42 0.30 16 49 H 0.08 0.88 8.13 -51.93 -0.42 0.46 16 50 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -33.53 406.99 -8.93 -42.46 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -8.56 Total: 0.30 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -0.07 Total: 0.78 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.80 Total: -45.65 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.61 Total: -20.72 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.53 -8.93 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428873906.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.327 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds