Wall clock time and date at job start Tue Mar 31 2020 20:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47416 * 2 1 4 4 C 1.46497 * 120.00243 * 89.99931 * 3 2 1 5 5 C 1.50708 * 109.47141 * 270.00210 * 4 3 2 6 6 H 1.07991 * 119.99789 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00089 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 C 1.34782 * 120.00018 * 270.00109 * 3 2 1 14 14 O 1.21287 * 119.99886 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00168 * 359.97438 * 13 3 2 16 16 H 1.09004 * 115.55771 * 325.64017 * 15 13 3 17 17 C 1.53157 * 117.51656 * 111.39024 * 15 13 3 18 18 C 1.52326 * 117.52026 * 179.81406 * 15 13 3 19 19 C 1.53293 * 128.81994 * 134.66293 * 18 15 13 20 20 N 1.47719 * 85.85521 * 196.98857 * 19 18 15 21 21 C 1.34780 * 134.39592 * 204.12455 * 20 19 18 22 22 O 1.21508 * 120.00259 * 179.97438 * 21 20 19 23 23 O 1.34634 * 119.99621 * 359.95858 * 21 20 19 24 24 C 1.45202 * 117.00115 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.46904 * 59.99919 * 24 23 21 26 26 C 1.52994 * 109.47396 * 180.02562 * 24 23 21 27 27 C 1.52998 * 109.47332 * 300.00413 * 24 23 21 28 28 C 1.47722 * 91.21359 * 24.09591 * 20 19 18 29 29 H 1.08999 * 109.47296 * 300.00425 * 1 2 3 30 30 H 1.09005 * 109.47172 * 60.00329 * 1 2 3 31 31 H 1.09000 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47090 * 240.00022 * 2 1 3 33 33 H 1.09002 * 109.47227 * 120.00196 * 2 1 3 34 34 H 1.08994 * 109.47995 * 150.00185 * 4 3 2 35 35 H 1.09000 * 109.47072 * 30.00143 * 4 3 2 36 36 H 0.96997 * 119.99848 * 180.02562 * 8 7 5 37 37 H 1.09002 * 117.51668 * 214.87428 * 17 15 13 38 38 H 1.08996 * 117.52015 * 359.95818 * 17 15 13 39 39 H 1.08994 * 113.81205 * 311.22510 * 19 18 15 40 40 H 1.09003 * 113.80718 * 82.75356 * 19 18 15 41 41 H 1.09004 * 109.47066 * 60.00335 * 25 24 23 42 42 H 1.08995 * 109.47383 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47269 * 300.00522 * 25 24 23 44 44 H 1.09001 * 109.46885 * 60.00191 * 26 24 23 45 45 H 1.09005 * 109.47011 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47202 * 300.00050 * 26 24 23 47 47 H 1.08998 * 109.47350 * 59.99108 * 27 24 23 48 48 H 1.08994 * 109.47555 * 179.97438 * 27 24 23 49 49 H 1.09001 * 109.46973 * 299.99823 * 27 24 23 50 50 H 1.09005 * 113.81259 * 221.67001 * 28 20 19 51 51 H 1.09005 * 113.92382 * 90.15077 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0066 2.7823 1.7037 6 1 0.1157 2.7247 1.0962 7 6 0.9949 3.5049 2.8779 8 7 -0.1011 4.1244 3.2578 9 14 2.5359 3.6038 3.9291 10 1 2.5403 2.4866 4.9075 11 1 2.5569 4.8985 4.6562 12 1 3.7356 3.5050 3.0595 13 6 2.2430 2.0165 -1.1672 14 8 2.6478 3.1598 -1.1672 15 6 1.9923 1.3060 -2.4723 16 1 2.2032 0.2365 -2.4736 17 6 0.8250 1.7981 -3.3331 18 6 2.2609 2.0787 -3.7573 19 6 2.9975 1.6173 -5.0200 20 7 3.0914 3.0518 -5.3597 21 6 3.2358 3.7411 -6.5089 22 8 3.2836 4.9551 -6.4873 23 8 3.3274 3.0846 -7.6807 24 6 3.4809 3.8913 -8.8782 25 6 4.7606 4.7233 -8.7719 26 6 3.5666 2.9769 -10.1017 27 6 2.2768 4.8241 -9.0226 28 6 2.9630 3.4294 -3.9374 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.0644 2.7984 1.1385 35 1 2.5506 1.3451 2.0283 36 1 -0.1092 4.6331 4.0837 37 1 0.2687 1.0524 -3.9011 38 1 0.2382 2.6351 -2.9548 39 1 3.9609 1.1483 -4.8207 40 1 2.3761 1.0422 -5.7065 41 1 5.6185 4.0588 -8.6691 42 1 4.8757 5.3293 -9.6705 43 1 4.6991 5.3748 -7.9002 44 1 2.6547 2.3846 -10.1772 45 1 3.6823 3.5826 -11.0006 46 1 4.4243 2.3121 -9.9991 47 1 2.2152 5.4756 -8.1509 48 1 2.3923 5.4301 -9.9212 49 1 1.3651 4.2315 -9.0982 50 1 2.3144 4.2887 -3.7669 51 1 3.9153 3.5038 -3.4121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492821410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:32 Heat of formation + Delta-G solvation = -42.168789 kcal Electronic energy + Delta-G solvation = -30213.473813 eV Core-core repulsion = 26115.994457 eV Total energy + Delta-G solvation = -4097.479356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01620 -40.10226 -38.61855 -36.73549 -35.42828 -34.61930 -33.99992 -32.60651 -30.21357 -28.39521 -27.71910 -27.62494 -27.58603 -26.41712 -24.25850 -22.80160 -22.18613 -21.68535 -19.79538 -18.96904 -18.16261 -17.67719 -17.16817 -16.82649 -16.57907 -16.44449 -15.50277 -15.31154 -14.97946 -14.57373 -14.36151 -14.22619 -14.03563 -13.68190 -13.49051 -13.27017 -13.13900 -12.74648 -12.60118 -12.49885 -12.41607 -12.28188 -12.13110 -12.11159 -12.02865 -11.69689 -11.65043 -11.50309 -11.38617 -11.09448 -10.86086 -10.74351 -10.58967 -10.52468 -10.44383 -10.23544 -10.10155 -9.87929 -9.49967 -9.04938 -8.82122 -8.59290 -7.75543 -6.08862 -4.07197 1.88034 2.78857 3.03253 3.26182 3.34625 3.38869 3.49839 3.67413 3.89767 4.21772 4.39442 4.47322 4.49141 4.52759 4.67026 4.79107 5.06588 5.08662 5.18576 5.20969 5.22308 5.25365 5.29082 5.37692 5.40679 5.43795 5.51061 5.52132 5.63276 5.65141 5.67806 5.73063 5.75299 5.80477 5.86400 5.93800 6.03008 6.08444 6.12165 6.13365 6.31963 6.39371 6.64402 6.83421 6.96007 7.32299 7.60607 7.62188 8.22022 8.28135 8.46313 8.90877 8.96849 9.51634 11.04287 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002370 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.954716 B =11809.776831 C =12486.800867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.113 3.887 3 N -0.588 5.588 4 C 0.216 3.784 5 C -0.525 4.525 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.536 3.464 14 O -0.537 6.537 15 C -0.156 4.156 16 H 0.127 0.873 17 C -0.111 4.111 18 C -0.155 4.155 19 C 0.150 3.850 20 N -0.632 5.632 21 C 0.674 3.326 22 O -0.567 6.567 23 O -0.364 6.364 24 C 0.135 3.865 25 C -0.184 4.184 26 C -0.139 4.139 27 C -0.184 4.184 28 C 0.189 3.811 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.025 0.975 36 H 0.264 0.736 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 -9.914 -22.899 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.319 5.319 4 C 0.095 3.905 5 C -0.563 4.563 6 H 0.095 0.905 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.322 3.678 14 O -0.414 6.414 15 C -0.178 4.178 16 H 0.144 0.856 17 C -0.148 4.148 18 C -0.157 4.157 19 C 0.028 3.972 20 N -0.375 5.375 21 C 0.431 3.569 22 O -0.457 6.457 23 O -0.279 6.279 24 C 0.098 3.902 25 C -0.241 4.241 26 C -0.196 4.196 27 C -0.241 4.241 28 C 0.069 3.931 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.059 0.941 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.224 -8.670 -22.993 25.349 hybrid contribution 0.620 0.023 0.732 0.959 sum 6.844 -8.647 -22.261 24.842 Atomic orbital electron populations 1.22220 0.95861 1.00897 1.03867 1.21437 0.94995 0.83134 1.01559 1.47876 1.63752 1.13420 1.06829 1.19693 0.98293 0.92640 0.79867 1.21325 0.97268 1.30673 1.07041 0.90510 1.24862 0.95920 0.94858 0.97433 1.69890 1.27177 1.33017 1.23515 0.86891 0.84407 0.77854 0.80841 1.20198 1.21018 1.18865 1.19292 0.78417 0.86126 0.83946 1.90672 1.46401 1.17377 1.86972 1.22318 1.05402 0.99922 0.90157 0.85571 1.22825 0.89177 1.03171 0.99605 1.22457 1.00424 0.97953 0.94853 1.22667 0.99454 0.82949 0.92154 1.48658 1.75004 1.09221 1.04617 1.17411 0.76022 0.83443 0.80054 1.90905 1.56447 1.12101 1.86226 1.86295 1.86092 1.41192 1.14350 1.22051 0.96289 0.90620 0.81205 1.22516 0.96065 1.00928 1.04558 1.21847 1.03241 0.99699 0.94851 1.22519 0.96867 1.00303 1.04397 1.22545 1.00349 0.96191 0.74015 0.90349 0.92913 0.92916 0.91700 0.90902 0.94122 0.95750 0.92601 0.87401 0.87355 0.88979 0.89576 0.92254 0.91203 0.89325 0.91509 0.90199 0.91556 0.89296 0.91227 0.92189 0.89170 0.88255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.24 37.15 0.38 -2.10 16 2 C 0.11 1.62 6.00 -4.05 -0.02 1.59 16 3 N -0.59 -11.27 2.46 -175.06 -0.43 -11.70 16 4 C 0.22 5.05 4.27 -5.19 -0.02 5.03 16 5 C -0.52 -14.50 9.48 -34.44 -0.33 -14.82 16 6 H 0.08 2.32 7.66 -52.49 -0.40 1.92 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.54 10.00 7.46 -10.99 -0.08 9.92 16 14 O -0.54 -12.16 14.71 5.55 0.08 -12.08 16 15 C -0.16 -2.01 5.29 -92.04 -0.49 -2.50 16 16 H 0.13 1.24 6.44 -51.93 -0.33 0.91 16 17 C -0.11 -1.31 10.24 -26.99 -0.28 -1.58 16 18 C -0.16 -1.90 3.04 -155.02 -0.47 -2.37 16 19 C 0.15 1.52 8.89 -3.23 -0.03 1.49 16 20 N -0.63 -8.55 3.61 -187.60 -0.68 -9.23 16 21 C 0.67 9.96 8.22 54.06 0.44 10.41 16 22 O -0.57 -9.70 12.61 -19.28 -0.24 -9.95 16 23 O -0.36 -4.61 9.87 -40.31 -0.40 -5.01 16 24 C 0.14 1.38 1.13 -90.62 -0.10 1.28 16 25 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 26 C -0.14 -0.98 8.85 37.15 0.33 -0.66 16 27 C -0.18 -1.87 8.37 37.16 0.31 -1.55 16 28 C 0.19 2.76 7.27 -3.23 -0.02 2.73 16 29 H 0.08 1.44 7.26 -51.93 -0.38 1.07 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.70 6.00 -51.92 -0.31 0.39 16 33 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 34 H 0.04 1.04 6.48 -51.93 -0.34 0.70 16 35 H 0.02 0.54 7.32 -51.93 -0.38 0.16 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.14 5.88 -51.93 -0.31 0.83 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.09 1.16 5.88 -51.93 -0.31 0.85 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 51 H 0.10 1.50 8.00 -51.93 -0.42 1.08 16 LS Contribution 409.13 15.07 6.17 6.17 Total: -1.00 -34.60 409.13 -8.22 -42.83 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.66 Total: 1.63 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.16 Total: 7.28 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.33 Total: -47.43 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.56 Total: -27.04 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.60 -8.22 -42.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492821410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.657 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds