Wall clock time and date at job start Tue Mar 31 2020 20:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46493 * 109.47416 * 2 1 4 4 C 1.46497 * 120.00243 * 89.99931 * 3 2 1 5 5 C 1.50708 * 109.47141 * 270.00210 * 4 3 2 6 6 H 1.07991 * 119.99789 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00008 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00089 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99938 * 0.02562 * 7 5 4 10 10 H 1.48506 * 109.47297 * 269.99556 * 9 7 5 11 11 H 1.48503 * 109.47261 * 149.99737 * 9 7 5 12 12 H 1.48500 * 109.47454 * 29.99730 * 9 7 5 13 13 C 1.34782 * 120.00018 * 270.00109 * 3 2 1 14 14 O 1.21287 * 119.99886 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00168 * 359.97438 * 13 3 2 16 16 H 1.09004 * 115.55771 * 325.64017 * 15 13 3 17 17 C 1.53157 * 117.51656 * 111.39024 * 15 13 3 18 18 C 1.52326 * 117.52026 * 179.81406 * 15 13 3 19 19 C 1.53293 * 128.81994 * 134.66293 * 18 15 13 20 20 N 1.47719 * 85.85521 * 196.98857 * 19 18 15 21 21 C 1.34780 * 134.39592 * 204.12455 * 20 19 18 22 22 O 1.21508 * 120.00259 * 179.97438 * 21 20 19 23 23 O 1.34634 * 119.99621 * 359.95858 * 21 20 19 24 24 C 1.45202 * 117.00115 * 179.97438 * 23 21 20 25 25 C 1.53002 * 109.46904 * 59.99919 * 24 23 21 26 26 C 1.52994 * 109.47396 * 180.02562 * 24 23 21 27 27 C 1.52998 * 109.47332 * 300.00413 * 24 23 21 28 28 C 1.47722 * 91.21359 * 24.09591 * 20 19 18 29 29 H 1.08999 * 109.47296 * 300.00425 * 1 2 3 30 30 H 1.09005 * 109.47172 * 60.00329 * 1 2 3 31 31 H 1.09000 * 109.47550 * 179.97438 * 1 2 3 32 32 H 1.09010 * 109.47090 * 240.00022 * 2 1 3 33 33 H 1.09002 * 109.47227 * 120.00196 * 2 1 3 34 34 H 1.08994 * 109.47995 * 150.00185 * 4 3 2 35 35 H 1.09000 * 109.47072 * 30.00143 * 4 3 2 36 36 H 0.96997 * 119.99848 * 180.02562 * 8 7 5 37 37 H 1.09002 * 117.51668 * 214.87428 * 17 15 13 38 38 H 1.08996 * 117.52015 * 359.95818 * 17 15 13 39 39 H 1.08994 * 113.81205 * 311.22510 * 19 18 15 40 40 H 1.09003 * 113.80718 * 82.75356 * 19 18 15 41 41 H 1.09004 * 109.47066 * 60.00335 * 25 24 23 42 42 H 1.08995 * 109.47383 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47269 * 300.00522 * 25 24 23 44 44 H 1.09001 * 109.46885 * 60.00191 * 26 24 23 45 45 H 1.09005 * 109.47011 * 180.02562 * 26 24 23 46 46 H 1.09004 * 109.47202 * 300.00050 * 26 24 23 47 47 H 1.08998 * 109.47350 * 59.99108 * 27 24 23 48 48 H 1.08994 * 109.47555 * 179.97438 * 27 24 23 49 49 H 1.09001 * 109.46973 * 299.99823 * 27 24 23 50 50 H 1.09005 * 113.81259 * 221.67001 * 28 20 19 51 51 H 1.09005 * 113.92382 * 90.15077 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0066 2.7823 1.7037 6 1 0.1157 2.7247 1.0962 7 6 0.9949 3.5049 2.8779 8 7 -0.1011 4.1244 3.2578 9 14 2.5359 3.6038 3.9291 10 1 2.5403 2.4866 4.9075 11 1 2.5569 4.8985 4.6562 12 1 3.7356 3.5050 3.0595 13 6 2.2430 2.0165 -1.1672 14 8 2.6478 3.1598 -1.1672 15 6 1.9923 1.3060 -2.4723 16 1 2.2032 0.2365 -2.4736 17 6 0.8250 1.7981 -3.3331 18 6 2.2609 2.0787 -3.7573 19 6 2.9975 1.6173 -5.0200 20 7 3.0914 3.0518 -5.3597 21 6 3.2358 3.7411 -6.5089 22 8 3.2836 4.9551 -6.4873 23 8 3.3274 3.0846 -7.6807 24 6 3.4809 3.8913 -8.8782 25 6 4.7606 4.7233 -8.7719 26 6 3.5666 2.9769 -10.1017 27 6 2.2768 4.8241 -9.0226 28 6 2.9630 3.4294 -3.9374 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 3.0644 2.7984 1.1385 35 1 2.5506 1.3451 2.0283 36 1 -0.1092 4.6331 4.0837 37 1 0.2687 1.0524 -3.9011 38 1 0.2382 2.6351 -2.9548 39 1 3.9609 1.1483 -4.8207 40 1 2.3761 1.0422 -5.7065 41 1 5.6185 4.0588 -8.6691 42 1 4.8757 5.3293 -9.6705 43 1 4.6991 5.3748 -7.9002 44 1 2.6547 2.3846 -10.1772 45 1 3.6823 3.5826 -11.0006 46 1 4.4243 2.3121 -9.9991 47 1 2.2152 5.4756 -8.1509 48 1 2.3923 5.4301 -9.9212 49 1 1.3651 4.2315 -9.0982 50 1 2.3144 4.2887 -3.7669 51 1 3.9153 3.5038 -3.4121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492821410.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:31 Heat of formation + Delta-G solvation = -65.032775 kcal Electronic energy + Delta-G solvation = -30214.465270 eV Core-core repulsion = 26115.994457 eV Total energy + Delta-G solvation = -4098.470813 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06576 -41.24245 -39.89284 -37.79332 -36.94092 -35.74532 -34.91806 -34.65581 -31.72744 -29.92517 -28.97578 -28.38290 -28.29274 -27.39216 -25.77074 -24.10887 -23.41705 -22.96122 -20.83340 -20.06156 -19.34724 -19.07301 -18.74053 -18.25130 -17.64143 -17.53259 -17.00024 -16.33268 -16.20031 -15.88603 -15.71259 -15.28775 -15.11050 -14.87161 -14.77773 -14.48985 -14.40994 -14.15136 -13.79181 -13.72574 -13.48471 -13.33352 -13.15463 -13.10925 -12.97846 -12.90209 -12.86654 -12.58559 -12.53028 -12.41409 -12.34937 -12.00619 -11.93713 -11.85371 -11.66858 -11.53877 -11.41203 -11.25373 -10.92111 -10.78453 -10.54759 -9.88489 -9.36765 -8.30735 -6.33846 0.88011 1.31440 1.36571 1.46438 1.64421 1.74062 2.23378 2.32615 2.67512 2.88467 3.03121 3.14181 3.44379 3.74878 3.75441 3.79476 3.92788 3.94365 4.17472 4.21230 4.27996 4.45730 4.46590 4.51539 4.55532 4.60008 4.62091 4.64923 4.75220 4.77740 4.80970 4.82140 4.83805 4.86329 4.88230 4.91777 4.99149 5.04024 5.07539 5.12125 5.13120 5.26956 5.33140 5.46256 5.49500 5.59929 5.73063 6.28375 6.58727 6.68157 6.77984 7.19890 7.26083 7.48478 8.85971 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002370 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.954716 B =11809.776831 C =12486.800867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.223 3.777 5 C -0.522 4.522 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.252 1.252 11 H -0.287 1.287 12 H -0.256 1.256 13 C 0.522 3.478 14 O -0.591 6.591 15 C -0.146 4.146 16 H 0.176 0.824 17 C -0.103 4.103 18 C -0.151 4.151 19 C 0.166 3.834 20 N -0.637 5.637 21 C 0.668 3.332 22 O -0.602 6.602 23 O -0.360 6.360 24 C 0.122 3.878 25 C -0.180 4.180 26 C -0.132 4.132 27 C -0.181 4.181 28 C 0.177 3.823 29 H 0.026 0.974 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.018 0.982 35 H 0.047 0.953 36 H 0.266 0.734 37 H 0.154 0.846 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.063 0.937 50 H 0.055 0.945 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.422 -13.967 -25.259 29.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.016 4.016 3 N -0.326 5.326 4 C 0.100 3.900 5 C -0.561 4.561 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.767 3.233 10 H -0.176 1.176 11 H -0.213 1.213 12 H -0.180 1.180 13 C 0.311 3.689 14 O -0.472 6.472 15 C -0.168 4.168 16 H 0.193 0.807 17 C -0.140 4.140 18 C -0.152 4.152 19 C 0.046 3.954 20 N -0.379 5.379 21 C 0.425 3.575 22 O -0.494 6.494 23 O -0.275 6.275 24 C 0.086 3.914 25 C -0.237 4.237 26 C -0.189 4.189 27 C -0.238 4.238 28 C 0.056 3.944 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.171 0.829 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.121 0.879 46 H 0.091 0.909 47 H 0.072 0.928 48 H 0.111 0.889 49 H 0.082 0.918 50 H 0.074 0.926 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.617 -12.807 -25.378 29.429 hybrid contribution 0.097 1.363 1.400 1.956 sum 7.714 -11.444 -23.978 27.666 Atomic orbital electron populations 1.22147 0.96305 1.02535 1.01241 1.21832 0.94553 0.80649 1.04601 1.47993 1.63850 1.15232 1.05522 1.19332 0.95154 0.92803 0.82699 1.21561 0.97557 1.30717 1.06285 0.94822 1.25836 0.99430 0.94556 0.99197 1.70054 1.29795 1.34582 1.24436 0.85765 0.79995 0.78375 0.79142 1.17623 1.21290 1.17978 1.20368 0.76987 0.85808 0.85710 1.90651 1.48583 1.20025 1.87958 1.22289 1.06263 1.01510 0.86700 0.80733 1.22953 0.88917 1.03052 0.99127 1.22444 1.00816 0.96285 0.95680 1.22899 1.00735 0.81086 0.90716 1.48757 1.74460 1.11046 1.03663 1.17628 0.75792 0.83204 0.80874 1.90894 1.57823 1.13818 1.86863 1.86305 1.85746 1.41306 1.14132 1.22473 0.96045 0.91474 0.81389 1.22475 0.96386 1.00769 1.04109 1.21866 1.03813 0.99518 0.93674 1.22478 0.97288 1.00149 1.03856 1.22425 0.99686 0.96916 0.75341 0.95468 0.93074 0.89015 0.86546 0.89915 0.96425 0.93546 0.92537 0.82858 0.90706 0.86573 0.86494 0.91746 0.88865 0.92773 0.90948 0.87883 0.90949 0.92806 0.88882 0.91777 0.92599 0.89437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 10.24 71.98 0.74 -3.76 16 2 C 0.11 2.70 6.00 86.38 0.52 3.22 16 3 N -0.60 -22.47 2.46 -826.16 -2.03 -24.50 16 4 C 0.22 10.55 4.27 85.64 0.37 10.92 16 5 C -0.52 -30.18 9.48 25.60 0.24 -29.94 16 6 H 0.03 2.17 7.66 -2.92 -0.02 2.15 16 7 C 0.01 0.42 5.47 84.65 0.46 0.89 16 8 N -0.95 -60.23 13.96 21.45 0.30 -59.93 16 9 Si 0.94 44.64 27.47 68.60 1.88 46.52 16 10 H -0.25 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 12 H -0.26 -11.65 6.54 99.48 0.65 -11.00 16 13 C 0.52 19.45 7.46 87.65 0.65 20.10 16 14 O -0.59 -28.14 14.71 -3.05 -0.04 -28.19 16 15 C -0.15 -3.37 5.29 -11.71 -0.06 -3.43 16 16 H 0.18 2.32 6.44 -2.38 -0.02 2.30 16 17 C -0.10 -2.22 10.24 30.42 0.31 -1.91 16 18 C -0.15 -3.42 3.04 -52.39 -0.16 -3.58 16 19 C 0.17 2.77 8.89 86.24 0.77 3.54 16 20 N -0.64 -16.96 3.61 -977.85 -3.53 -20.49 16 21 C 0.67 19.94 8.22 129.79 1.07 21.01 16 22 O -0.60 -21.87 12.61 19.82 0.25 -21.62 16 23 O -0.36 -8.65 9.87 -55.44 -0.55 -9.20 16 24 C 0.12 2.32 1.13 -10.80 -0.01 2.31 16 25 C -0.18 -3.49 8.37 71.98 0.60 -2.89 16 26 C -0.13 -1.44 8.85 71.98 0.64 -0.81 16 27 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 28 C 0.18 5.43 7.27 86.24 0.63 6.06 16 29 H 0.03 1.01 7.26 -2.39 -0.02 0.99 16 30 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 1.82 6.00 -2.38 -0.01 1.81 16 33 H 0.08 1.98 7.89 -2.39 -0.02 1.96 16 34 H 0.02 0.92 6.48 -2.39 -0.02 0.91 16 35 H 0.05 2.00 7.32 -2.39 -0.02 1.98 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.15 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 42 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.05 1.45 5.88 -2.39 -0.01 1.44 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.05 1.46 5.88 -2.39 -0.01 1.45 16 48 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 51 H 0.09 2.84 8.00 -2.38 -0.02 2.82 16 Total: -1.00 -85.48 409.13 4.50 -80.99 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.85 Total: 17.64 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 7.36 Total: 18.78 kcal Atomic # 7 Polarization: -99.66 SS G_CDS: -5.26 Total: -104.92 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -0.34 Total: -59.01 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.52 kcal Total: -85.48 4.50 -80.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492821410.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.954 kcal (2) G-P(sol) polarization free energy of solvation -85.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds