Wall clock time and date at job start Tue Mar 31 2020 20:46:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 N 1.46502 * 109.47279 * 2 1
4 4 C 1.46500 * 120.00339 * 275.45560 * 3 2 1
5 5 C 1.50702 * 109.47048 * 270.00193 * 4 3 2
6 6 H 1.07998 * 119.99775 * 359.97438 * 5 4 3
7 7 C 1.37874 * 119.99832 * 180.02562 * 5 4 3
8 8 N 1.31517 * 119.99699 * 179.97438 * 7 5 4
9 9 Si 1.86803 * 120.00035 * 359.97438 * 7 5 4
10 10 H 1.48501 * 109.46705 * 90.00484 * 9 7 5
11 11 H 1.48498 * 109.46833 * 210.00204 * 9 7 5
12 12 H 1.48494 * 109.47104 * 330.00189 * 9 7 5
13 13 C 1.34781 * 119.99753 * 95.45232 * 3 2 1
14 14 O 1.21275 * 119.99858 * 184.97411 * 13 3 2
15 15 C 1.50699 * 120.00158 * 4.97919 * 13 3 2
16 16 C 1.52870 * 119.42552 * 280.75509 * 15 13 3
17 17 C 1.53124 * 60.43335 * 249.33021 * 16 15 13
18 18 H 1.08999 * 120.24930 * 111.99126 * 17 16 15
19 19 C 1.54702 * 117.54922 * 268.00831 * 17 16 15
20 20 C 1.54959 * 102.70383 * 40.88278 * 19 17 16
21 21 N 1.47383 * 117.18239 * 76.59804 * 15 13 3
22 22 C 1.34776 * 126.94715 * 344.29685 * 21 15 13
23 23 O 1.21517 * 120.00006 * 5.24635 * 22 21 15
24 24 O 1.34638 * 120.00211 * 185.24058 * 22 21 15
25 25 C 1.45196 * 117.00056 * 184.25503 * 24 22 21
26 26 C 1.53001 * 109.46942 * 60.87344 * 25 24 22
27 27 C 1.52997 * 109.46967 * 180.87411 * 25 24 22
28 28 C 1.53001 * 109.47396 * 300.87506 * 25 24 22
29 29 H 1.09004 * 109.47347 * 305.59832 * 1 2 3
30 30 H 1.09005 * 109.47170 * 65.59565 * 1 2 3
31 31 H 1.08998 * 109.47377 * 185.59556 * 1 2 3
32 32 H 1.08999 * 109.47215 * 240.00386 * 2 1 3
33 33 H 1.09006 * 109.47411 * 120.00258 * 2 1 3
34 34 H 1.09001 * 109.46412 * 29.99673 * 4 3 2
35 35 H 1.08997 * 109.47196 * 149.99936 * 4 3 2
36 36 H 0.97006 * 119.99754 * 179.97438 * 8 7 5
37 37 H 1.09002 * 117.45619 * 356.94553 * 16 15 13
38 38 H 1.08999 * 117.45586 * 141.71246 * 16 15 13
39 39 H 1.09001 * 110.77138 * 282.57472 * 19 17 16
40 40 H 1.09002 * 110.76105 * 159.18130 * 19 17 16
41 41 H 1.08997 * 110.65652 * 279.10588 * 20 19 17
42 42 H 1.09000 * 110.66365 * 155.99168 * 20 19 17
43 43 H 1.08992 * 109.47044 * 63.34652 * 26 25 24
44 44 H 1.09003 * 109.47096 * 183.34455 * 26 25 24
45 45 H 1.09002 * 109.47530 * 303.33985 * 26 25 24
46 46 H 1.08998 * 109.47661 * 60.00222 * 27 25 24
47 47 H 1.08997 * 109.47366 * 180.02562 * 27 25 24
48 48 H 1.09003 * 109.47007 * 299.99671 * 27 25 24
49 49 H 1.09001 * 109.47273 * 66.29816 * 28 25 24
50 50 H 1.09002 * 109.47301 * 186.29828 * 28 25 24
51 51 H 1.08999 * 109.46713 * 306.29888 * 28 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1488 2.1121 -1.2629
5 6 3.5270 1.8912 -1.8311
6 1 4.2350 1.2689 -1.3039
7 6 3.8844 2.4843 -3.0233
8 7 5.0873 2.2918 -3.5189
9 14 2.6599 3.5611 -3.9348
10 1 2.8022 4.9672 -3.4789
11 1 2.9239 3.4847 -5.3941
12 1 1.2805 3.0873 -3.6558
13 6 2.3475 1.9796 1.1620
14 8 2.6653 3.1499 1.1726
15 6 2.3207 1.1943 2.4479
16 6 0.9840 0.9388 3.1442
17 6 2.0025 1.8841 3.7875
18 1 1.7935 2.9517 3.8566
19 6 3.0022 1.2770 4.8000
20 6 3.3853 -0.0693 4.1352
21 7 3.4394 0.2668 2.6939
22 6 4.3317 -0.1840 1.7899
23 8 4.3180 0.2490 0.6546
24 8 5.2383 -1.1139 2.1448
25 6 6.2279 -1.4836 1.1488
26 6 7.0538 -0.2528 0.7692
27 6 7.1513 -2.5603 1.7224
28 6 5.5216 -2.0272 -0.0948
29 1 -0.3634 0.5982 0.8356
30 1 -0.3634 0.4246 -0.9359
31 1 -0.3634 -1.0227 0.1002
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.4021 1.7512 -1.9703
35 1 1.9957 3.1764 -1.0843
36 1 5.3386 2.7088 -4.3579
37 1 0.0935 1.3852 2.7018
38 1 0.8384 -0.0356 3.6104
39 1 2.5221 1.1092 5.7641
40 1 3.8779 1.9169 4.9094
41 1 2.6216 -0.8233 4.3258
42 1 4.3591 -0.4090 4.4877
43 1 7.6036 0.0990 1.6420
44 1 7.7567 -0.5165 -0.0211
45 1 6.3894 0.5358 0.4160
46 1 6.5630 -3.4371 1.9929
47 1 7.8945 -2.8375 0.9749
48 1 7.6546 -2.1730 2.6083
49 1 4.9511 -1.2276 -0.5673
50 1 6.2635 -2.4079 -0.7968
51 1 4.8471 -2.8333 0.1937
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000495679642.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:46:23
Heat of formation + Delta-G solvation = -55.192357 kcal
Electronic energy + Delta-G solvation = -33228.041547 eV
Core-core repulsion = 29129.997446 eV
Total energy + Delta-G solvation = -4098.044100 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.09744 -39.75201 -38.04997 -36.37740 -35.21231 -33.94568 -32.61709 -32.40475
-30.43662 -30.12088 -27.64223 -27.20619 -27.02227 -24.44293 -24.18889 -22.87751
-22.65647 -20.89042 -20.23933 -19.41876 -18.32658 -17.25787 -16.67526 -16.57854
-16.06677 -15.64154 -15.48253 -15.12633 -14.62036 -14.40518 -14.19715 -13.98135
-13.46968 -13.41446 -13.30248 -13.00820 -12.93480 -12.75177 -12.35382 -12.28945
-12.19967 -12.09635 -11.88134 -11.68444 -11.56735 -11.55659 -11.39702 -11.20462
-11.14611 -10.94649 -10.78625 -10.67152 -10.56546 -10.42495 -10.25424 -10.02057
-10.01213 -9.54133 -9.21014 -8.98277 -8.39696 -8.37149 -7.48296 -5.87102
-3.81764 2.05532 3.05615 3.38926 3.39722 3.44760 3.47178 3.62454
3.82538 4.14110 4.39183 4.54864 4.56947 4.75023 4.90951 4.95874
4.97824 5.01810 5.16374 5.27234 5.41871 5.43948 5.48604 5.57415
5.58106 5.61237 5.67580 5.70555 5.72956 5.78663 5.84692 5.92409
5.96992 5.98680 6.09232 6.12477 6.16626 6.17313 6.29544 6.32799
6.55252 6.73846 6.75558 6.82501 6.85929 7.09476 7.53089 7.69172
7.82386 8.42141 8.63887 8.76251 9.07122 9.46429 9.75385 11.26306
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.009476 B = 0.006066 C = 0.004350
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2954.268323 B = 4614.617405 C = 6434.599122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.119 3.881
3 N -0.560 5.560
4 C 0.218 3.782
5 C -0.514 4.514
6 H 0.103 0.897
7 C 0.068 3.932
8 N -0.902 5.902
9 Si 0.866 3.134
10 H -0.277 1.277
11 H -0.288 1.288
12 H -0.268 1.268
13 C 0.563 3.437
14 O -0.537 6.537
15 C 0.088 3.912
16 C -0.146 4.146
17 C -0.150 4.150
18 H 0.129 0.871
19 C -0.104 4.104
20 C 0.101 3.899
21 N -0.574 5.574
22 C 0.650 3.350
23 O -0.497 6.497
24 O -0.368 6.368
25 C 0.140 3.860
26 C -0.181 4.181
27 C -0.136 4.136
28 C -0.183 4.183
29 H 0.052 0.948
30 H 0.057 0.943
31 H 0.058 0.942
32 H 0.078 0.922
33 H 0.062 0.938
34 H 0.025 0.975
35 H 0.032 0.968
36 H 0.259 0.741
37 H 0.114 0.886
38 H 0.103 0.897
39 H 0.086 0.914
40 H 0.084 0.916
41 H 0.073 0.927
42 H 0.090 0.910
43 H 0.052 0.948
44 H 0.070 0.930
45 H 0.093 0.907
46 H 0.062 0.938
47 H 0.079 0.921
48 H 0.062 0.938
49 H 0.103 0.897
50 H 0.066 0.934
51 H 0.052 0.948
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.519 -11.058 16.914 20.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.006 4.006
3 N -0.289 5.289
4 C 0.097 3.903
5 C -0.552 4.552
6 H 0.121 0.879
7 C -0.132 4.132
8 N -0.542 5.542
9 Si 0.693 3.307
10 H -0.203 1.203
11 H -0.214 1.214
12 H -0.193 1.193
13 C 0.347 3.653
14 O -0.414 6.414
15 C -0.002 4.002
16 C -0.185 4.185
17 C -0.170 4.170
18 H 0.147 0.853
19 C -0.142 4.142
20 C -0.021 4.021
21 N -0.317 5.317
22 C 0.405 3.595
23 O -0.380 6.380
24 O -0.284 6.284
25 C 0.103 3.897
26 C -0.238 4.238
27 C -0.194 4.194
28 C -0.240 4.240
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.077 0.923
32 H 0.096 0.904
33 H 0.080 0.920
34 H 0.043 0.957
35 H 0.050 0.950
36 H 0.069 0.931
37 H 0.132 0.868
38 H 0.122 0.878
39 H 0.105 0.895
40 H 0.102 0.898
41 H 0.092 0.908
42 H 0.108 0.892
43 H 0.071 0.929
44 H 0.089 0.911
45 H 0.112 0.888
46 H 0.081 0.919
47 H 0.097 0.903
48 H 0.081 0.919
49 H 0.121 0.879
50 H 0.085 0.915
51 H 0.071 0.929
Dipole moment (debyes) X Y Z Total
from point charges -4.039 -10.357 16.175 19.627
hybrid contribution -0.425 0.429 -0.681 0.910
sum -4.463 -9.928 15.495 18.936
Atomic orbital electron populations
1.22279 0.97124 1.01239 1.02179 1.21259 0.92531 0.84171 1.02599
1.47520 1.61841 1.12866 1.06718 1.19651 0.98136 0.92351 0.80131
1.21704 0.97580 1.30306 1.05633 0.87909 1.24847 0.94935 0.96211
0.97233 1.69904 1.18801 1.45138 1.20348 0.87022 0.82419 0.82038
0.79184 1.20273 1.21403 1.19343 1.18549 0.77721 0.86235 0.82813
1.90661 1.48427 1.16446 1.85866 1.21313 0.89198 0.94717 0.94928
1.23533 0.92587 1.01099 1.01245 1.23728 0.99733 0.99915 0.93638
0.85284 1.22306 0.98459 0.95888 0.97505 1.22561 1.02739 0.97191
0.79656 1.46640 1.28208 1.48439 1.08374 1.17699 0.79261 0.79128
0.83459 1.91273 1.71626 1.58194 1.16923 1.86214 1.41142 1.54626
1.46458 1.22046 0.85822 0.94987 0.86816 1.22461 1.01001 0.98835
1.01528 1.21832 0.98404 0.97394 1.01737 1.22553 1.01573 1.02955
0.96936 0.92922 0.92343 0.92277 0.90360 0.91966 0.95680 0.94990
0.93092 0.86830 0.87828 0.89517 0.89772 0.90843 0.89196 0.92873
0.91065 0.88800 0.91865 0.90270 0.91893 0.87875 0.91549 0.92883
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.37 10.23 37.15 0.38 -1.99 16
2 C 0.12 2.11 4.93 -4.04 -0.02 2.09 16
3 N -0.56 -12.31 1.57 -175.06 -0.27 -12.59 16
4 C 0.22 5.63 4.29 -5.19 -0.02 5.60 16
5 C -0.51 -15.32 9.93 -34.44 -0.34 -15.67 16
6 H 0.10 3.34 5.86 -52.49 -0.31 3.03 16
7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16
8 N -0.90 -28.65 13.96 55.43 0.77 -27.88 16
9 Si 0.87 22.49 27.47 -169.99 -4.67 17.82 16
10 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16
11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
12 H -0.27 -6.59 6.54 56.52 0.37 -6.22 16
13 C 0.56 12.33 5.74 -10.98 -0.06 12.27 16
14 O -0.54 -14.04 16.50 5.56 0.09 -13.95 16
15 C 0.09 1.42 1.52 -132.04 -0.20 1.22 16
16 C -0.15 -1.68 9.02 -26.73 -0.24 -1.92 16
17 C -0.15 -1.90 6.92 -89.14 -0.62 -2.51 16
18 H 0.13 1.69 8.14 -51.93 -0.42 1.27 16
19 C -0.10 -1.02 7.01 -24.80 -0.17 -1.20 16
20 C 0.10 1.09 6.61 -2.13 -0.01 1.08 16
21 N -0.57 -9.02 3.03 -162.20 -0.49 -9.51 16
22 C 0.65 11.89 7.11 54.05 0.38 12.28 16
23 O -0.50 -11.04 6.57 -19.29 -0.13 -11.17 16
24 O -0.37 -5.90 9.39 -40.32 -0.38 -6.27 16
25 C 0.14 2.10 1.13 -90.62 -0.10 2.00 16
26 C -0.18 -3.05 8.43 37.16 0.31 -2.73 16
27 C -0.14 -1.50 8.85 37.16 0.33 -1.17 16
28 C -0.18 -2.92 8.24 37.16 0.31 -2.61 16
29 H 0.05 0.68 6.56 -51.93 -0.34 0.34 16
30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16
33 H 0.06 1.04 5.38 -51.93 -0.28 0.76 16
34 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16
35 H 0.03 0.89 6.79 -51.93 -0.35 0.53 16
36 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16
37 H 0.11 1.25 7.12 -51.93 -0.37 0.88 16
38 H 0.10 0.94 7.14 -51.93 -0.37 0.57 16
39 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16
41 H 0.07 0.64 7.28 -51.93 -0.38 0.26 16
42 H 0.09 0.91 7.89 -51.93 -0.41 0.50 16
43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
45 H 0.09 2.04 6.03 -51.93 -0.31 1.73 16
46 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16
47 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
49 H 0.10 2.10 5.88 -51.93 -0.31 1.80 16
50 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16
51 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
LS Contribution 391.87 15.07 5.91 5.91
Total: -1.00 -36.68 391.87 -7.81 -44.49
By element:
Atomic # 1 Polarization: 12.92 SS G_CDS: -8.46 Total: 4.46 kcal
Atomic # 6 Polarization: 8.87 SS G_CDS: -0.18 Total: 8.69 kcal
Atomic # 7 Polarization: -49.98 SS G_CDS: 0.01 Total: -49.97 kcal
Atomic # 8 Polarization: -30.98 SS G_CDS: -0.41 Total: -31.39 kcal
Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -36.68 -7.81 -44.49 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000495679642.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -10.704 kcal
(2) G-P(sol) polarization free energy of solvation -36.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.383 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.192 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds