Wall clock time and date at job start Tue Mar 31 2020 21:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47128 * 2 1 4 4 C 1.42899 * 114.00050 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.88771 * 18.65693 * 4 3 2 6 6 C 1.54241 * 113.66274 * 247.18090 * 4 3 2 7 7 C 1.53947 * 87.19373 * 270.26421 * 6 4 3 8 8 H 1.08999 * 113.66342 * 220.75608 * 7 6 4 9 9 N 1.46493 * 113.66533 * 89.78458 * 7 6 4 10 10 C 1.34784 * 119.99864 * 106.01541 * 9 7 6 11 11 O 1.21588 * 119.99858 * 359.72927 * 10 9 7 12 12 N 1.34777 * 119.99964 * 179.73002 * 10 9 7 13 13 C 1.47021 * 125.64901 * 0.02562 * 12 10 9 14 14 C 1.54325 * 107.26976 * 181.02837 * 13 12 10 15 15 C 1.55151 * 102.94312 * 22.19419 * 14 13 12 16 16 O 1.42902 * 111.00499 * 82.57269 * 15 14 13 17 17 C 1.50697 * 111.00520 * 206.42714 * 15 14 13 18 18 H 1.08002 * 119.99935 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00185 * 180.02562 * 17 15 14 20 20 N 1.31510 * 119.99975 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00082 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47460 * 59.99995 * 21 19 17 23 23 H 1.48504 * 109.47413 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47419 * 300.00066 * 21 19 17 25 25 C 1.47427 * 125.64553 * 179.72156 * 12 10 9 26 26 C 1.52912 * 113.66386 * 149.99801 * 4 3 2 27 27 C 1.52905 * 121.13588 * 215.29221 * 26 4 3 28 28 C 1.53952 * 86.78266 * 100.82400 * 27 26 4 29 29 C 1.52910 * 121.13615 * 323.85730 * 26 4 3 30 30 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47297 * 299.99900 * 1 2 3 32 32 H 1.09008 * 109.47088 * 60.00083 * 1 2 3 33 33 H 1.09006 * 109.47162 * 239.99913 * 2 1 3 34 34 H 1.09002 * 109.46693 * 120.00479 * 2 1 3 35 35 H 1.09008 * 113.58371 * 155.70646 * 6 4 3 36 36 H 1.08999 * 113.67121 * 24.83514 * 6 4 3 37 37 H 0.97000 * 120.00740 * 285.74233 * 9 7 6 38 38 H 1.08998 * 109.88454 * 300.44923 * 13 12 10 39 39 H 1.09003 * 109.88170 * 61.45444 * 13 12 10 40 40 H 1.09000 * 110.71816 * 140.55971 * 14 13 12 41 41 H 1.09007 * 110.71703 * 263.83277 * 14 13 12 42 42 H 0.96703 * 113.99825 * 179.97438 * 16 15 14 43 43 H 0.97006 * 119.99941 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.36265 * 274.74173 * 25 12 10 45 45 H 1.09001 * 110.36901 * 37.06095 * 25 12 10 46 46 H 1.09001 * 113.66237 * 215.28921 * 27 26 4 47 47 H 1.08993 * 113.66562 * 346.34937 * 27 26 4 48 48 H 1.09000 * 113.57626 * 270.13604 * 28 27 26 49 49 H 1.08997 * 113.58502 * 139.33256 * 28 27 26 50 50 H 1.09004 * 113.66091 * 13.64974 * 29 26 4 51 51 H 1.09002 * 113.66181 * 144.70326 * 29 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9287 0.5451 -0.3203 6 6 4.0042 2.0553 1.3029 7 6 3.8579 3.4396 0.6453 8 1 4.6973 4.1072 0.8399 9 7 2.5589 4.0717 0.8882 10 6 2.4615 5.1010 1.7529 11 8 3.4509 5.5017 2.3349 12 7 1.2673 5.6861 1.9722 13 6 -0.0034 5.3036 1.3394 14 6 -1.0879 6.2635 1.8725 15 6 -0.2643 7.4913 2.3431 16 8 0.0380 8.3562 1.2464 17 6 -0.9852 8.2389 3.4350 18 1 -1.9474 7.8924 3.7823 19 6 -0.4170 9.3660 3.9899 20 7 0.7543 9.7883 3.5667 21 14 -1.3110 10.2931 5.3429 22 1 -1.5252 9.3911 6.5030 23 1 -0.4951 11.4595 5.7663 24 1 -2.6238 10.7663 4.8349 25 6 1.0179 6.8115 2.8913 26 6 3.9472 2.7175 -0.6997 27 6 5.2489 2.6978 -1.5017 28 6 4.3696 2.6032 -2.7618 29 6 3.2510 3.2726 -1.9428 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.0389 1.7705 1.4941 36 1 3.3588 1.9141 2.1699 37 1 1.7695 3.7521 0.4238 38 1 0.0777 5.4005 0.2567 39 1 -0.2535 4.2756 1.6017 40 1 -1.7789 6.5443 1.0776 41 1 -1.6229 5.8143 2.7093 42 1 0.5514 9.1380 1.4920 43 1 1.1542 10.5810 3.9574 44 1 0.8521 6.4445 3.9042 45 1 1.8548 7.5097 2.8721 46 1 5.8184 3.6248 -1.4343 47 1 5.8579 1.8112 -1.3256 48 1 4.1404 1.5795 -3.0576 49 1 4.7281 3.2137 -3.5906 50 1 2.2639 2.8450 -2.1190 51 1 3.2589 4.3611 -1.9993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591967343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:45 Heat of formation + Delta-G solvation = -76.037675 kcal Electronic energy + Delta-G solvation = -31370.948557 eV Core-core repulsion = 27272.000536 eV Total energy + Delta-G solvation = -4098.948021 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.11509 -39.21659 -37.45249 -37.16934 -34.93252 -34.15268 -32.32153 -32.09265 -30.93726 -29.78784 -27.71689 -25.92246 -25.35400 -24.76324 -24.14026 -23.02594 -22.44304 -20.91970 -19.56850 -19.29964 -18.57696 -17.52441 -17.04912 -16.59910 -16.01663 -15.85791 -15.68944 -15.12321 -15.08544 -14.90965 -14.30600 -14.08048 -13.70572 -13.45767 -13.14740 -12.97173 -12.90319 -12.75344 -12.64995 -12.47408 -12.07823 -12.00212 -11.92815 -11.74105 -11.56182 -11.42672 -11.34539 -11.11781 -10.98720 -10.73771 -10.51718 -10.51501 -10.45304 -10.36016 -10.12829 -10.08119 -9.50952 -9.49322 -9.32252 -8.63794 -8.59193 -8.29775 -7.56858 -6.24097 -4.33647 3.04000 3.24856 3.30555 3.32147 3.41674 3.83249 4.23804 4.29980 4.40586 4.50508 4.55613 4.70692 4.75226 4.84266 4.88736 4.93160 5.03043 5.09462 5.12735 5.26807 5.40240 5.50331 5.51577 5.62087 5.65742 5.67630 5.69842 5.74846 5.76049 5.83337 5.91547 5.92253 5.98727 6.01424 6.12757 6.19225 6.23113 6.33352 6.59011 6.78271 6.95394 6.99828 7.06307 7.13417 7.31447 7.39910 7.79042 7.82081 8.06829 8.65496 8.73292 9.28357 9.36048 9.52642 10.83058 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002970 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.040954 B = 9425.963880 C =10062.076972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.092 3.908 5 H 0.072 0.928 6 C -0.174 4.174 7 C 0.167 3.833 8 H 0.098 0.902 9 N -0.723 5.723 10 C 0.718 3.282 11 O -0.601 6.601 12 N -0.627 5.627 13 C 0.108 3.892 14 C -0.116 4.116 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.113 3.887 26 C -0.119 4.119 27 C -0.104 4.104 28 C -0.140 4.140 29 C -0.118 4.118 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.047 0.953 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.399 0.601 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.386 0.614 43 H 0.271 0.729 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -19.571 -10.595 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.280 6.280 4 C 0.034 3.966 5 H 0.090 0.910 6 C -0.214 4.214 7 C 0.059 3.941 8 H 0.116 0.884 9 N -0.378 5.378 10 C 0.420 3.580 11 O -0.481 6.481 12 N -0.363 5.363 13 C -0.015 4.015 14 C -0.154 4.154 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.009 4.009 26 C -0.120 4.120 27 C -0.142 4.142 28 C -0.177 4.177 29 C -0.156 4.156 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.238 0.762 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.895 -19.426 -10.460 22.600 hybrid contribution -0.314 0.424 0.941 1.079 sum 4.581 -19.002 -9.520 21.741 Atomic orbital electron populations 1.21750 0.93583 1.02184 1.03446 1.22505 0.95640 0.83731 0.99789 1.87846 1.19437 1.26247 1.94439 1.22772 0.81662 0.96220 0.95931 0.91029 1.24047 1.01542 0.97826 0.97949 1.21236 0.86907 0.92765 0.93165 0.88356 1.44632 1.10207 1.35504 1.47414 1.15523 0.82906 0.79492 0.80108 1.90863 1.35618 1.67249 1.54331 1.47857 1.05397 1.36671 1.46411 1.21886 0.85104 0.97702 0.96854 1.22595 0.96490 0.95684 1.00646 1.19619 0.88529 0.86237 0.84738 1.86060 1.77562 1.39272 1.36500 1.21472 1.05626 1.10956 1.19615 0.91567 1.25079 0.94590 0.96864 0.96682 1.69566 1.15935 1.24846 1.42982 0.86453 0.79583 0.79131 0.81660 1.20026 1.21086 1.20024 1.23159 1.01372 0.85529 0.90830 1.23201 0.98553 0.96294 0.93938 1.22562 0.94311 1.02663 0.94681 1.22844 0.97280 1.00893 0.96704 1.22535 0.98305 1.00656 0.94093 0.91233 0.91590 0.91749 0.93578 0.93484 0.88711 0.90298 0.76562 0.92806 0.93229 0.90849 0.90587 0.76234 0.91848 0.92648 0.90204 0.89051 0.91188 0.90519 0.91346 0.90823 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.06 0.50 6.50 37.16 0.24 0.74 16 3 O -0.36 -3.95 8.72 -35.23 -0.31 -4.25 16 4 C 0.09 0.94 4.18 -26.13 -0.11 0.83 16 5 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 6 C -0.17 -2.05 7.74 -25.59 -0.20 -2.25 16 7 C 0.17 2.35 4.09 -67.48 -0.28 2.07 16 8 H 0.10 1.57 7.51 -51.93 -0.39 1.18 16 9 N -0.72 -12.00 4.91 -58.23 -0.29 -12.29 16 10 C 0.72 15.44 8.49 -86.91 -0.74 14.70 16 11 O -0.60 -15.13 16.22 5.29 0.09 -15.05 16 12 N -0.63 -13.66 3.32 -176.09 -0.59 -14.24 16 13 C 0.11 2.00 6.15 -3.06 -0.02 1.98 16 14 C -0.12 -2.37 6.12 -24.90 -0.15 -2.52 16 15 C 0.25 6.19 0.89 -89.51 -0.08 6.11 16 16 O -0.58 -15.35 13.19 -35.23 -0.46 -15.81 16 17 C -0.54 -14.19 8.25 -34.44 -0.28 -14.47 16 18 H 0.07 1.70 7.76 -52.49 -0.41 1.29 16 19 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 20 N -0.89 -24.25 10.72 55.43 0.59 -23.66 16 21 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.11 2.83 5.64 -2.41 -0.01 2.81 16 26 C -0.12 -1.26 0.83 -154.71 -0.13 -1.39 16 27 C -0.10 -0.90 7.84 -26.28 -0.21 -1.11 16 28 C -0.14 -1.17 8.08 -25.75 -0.21 -1.38 16 29 C -0.12 -1.25 7.32 -26.28 -0.19 -1.45 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.94 8.14 -51.92 -0.42 0.51 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.40 6.16 6.58 -40.82 -0.27 5.90 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 41 H 0.08 1.46 8.01 -51.92 -0.42 1.04 16 42 H 0.39 10.51 6.93 45.56 0.32 10.83 16 43 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 45 H 0.08 2.25 7.64 -51.93 -0.40 1.85 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 50 H 0.07 0.80 7.83 -51.93 -0.41 0.39 16 51 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -30.56 404.25 -10.24 -40.80 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -8.27 Total: 17.21 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.08 Total: 5.66 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: -0.28 Total: -50.19 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -0.69 Total: -35.11 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.56 -10.24 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.233 kcal (2) G-P(sol) polarization free energy of solvation -30.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds