Wall clock time and date at job start Tue Mar 31 2020 21:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42895 * 109.47128 * 2 1 4 4 C 1.42899 * 114.00050 * 179.97438 * 3 2 1 5 5 H 1.08997 * 112.88771 * 18.65693 * 4 3 2 6 6 C 1.54241 * 113.66274 * 247.18090 * 4 3 2 7 7 C 1.53947 * 87.19373 * 270.26421 * 6 4 3 8 8 H 1.08999 * 113.66342 * 220.75608 * 7 6 4 9 9 N 1.46493 * 113.66533 * 89.78458 * 7 6 4 10 10 C 1.34784 * 119.99864 * 106.01541 * 9 7 6 11 11 O 1.21588 * 119.99858 * 359.72927 * 10 9 7 12 12 N 1.34777 * 119.99964 * 179.73002 * 10 9 7 13 13 C 1.47021 * 125.64901 * 0.02562 * 12 10 9 14 14 C 1.54325 * 107.26976 * 181.02837 * 13 12 10 15 15 C 1.55151 * 102.94312 * 22.19419 * 14 13 12 16 16 O 1.42902 * 111.00499 * 82.57269 * 15 14 13 17 17 C 1.50697 * 111.00520 * 206.42714 * 15 14 13 18 18 H 1.08002 * 119.99935 * 359.97438 * 17 15 14 19 19 C 1.37878 * 120.00185 * 180.02562 * 17 15 14 20 20 N 1.31510 * 119.99975 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00082 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47460 * 59.99995 * 21 19 17 23 23 H 1.48504 * 109.47413 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47419 * 300.00066 * 21 19 17 25 25 C 1.47427 * 125.64553 * 179.72156 * 12 10 9 26 26 C 1.52912 * 113.66386 * 149.99801 * 4 3 2 27 27 C 1.52905 * 121.13588 * 215.29221 * 26 4 3 28 28 C 1.53952 * 86.78266 * 100.82400 * 27 26 4 29 29 C 1.52910 * 121.13615 * 323.85730 * 26 4 3 30 30 H 1.08996 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47297 * 299.99900 * 1 2 3 32 32 H 1.09008 * 109.47088 * 60.00083 * 1 2 3 33 33 H 1.09006 * 109.47162 * 239.99913 * 2 1 3 34 34 H 1.09002 * 109.46693 * 120.00479 * 2 1 3 35 35 H 1.09008 * 113.58371 * 155.70646 * 6 4 3 36 36 H 1.08999 * 113.67121 * 24.83514 * 6 4 3 37 37 H 0.97000 * 120.00740 * 285.74233 * 9 7 6 38 38 H 1.08998 * 109.88454 * 300.44923 * 13 12 10 39 39 H 1.09003 * 109.88170 * 61.45444 * 13 12 10 40 40 H 1.09000 * 110.71816 * 140.55971 * 14 13 12 41 41 H 1.09007 * 110.71703 * 263.83277 * 14 13 12 42 42 H 0.96703 * 113.99825 * 179.97438 * 16 15 14 43 43 H 0.97006 * 119.99941 * 180.02562 * 20 19 17 44 44 H 1.09003 * 110.36265 * 274.74173 * 25 12 10 45 45 H 1.09001 * 110.36901 * 37.06095 * 25 12 10 46 46 H 1.09001 * 113.66237 * 215.28921 * 27 26 4 47 47 H 1.08993 * 113.66562 * 346.34937 * 27 26 4 48 48 H 1.09000 * 113.57626 * 270.13604 * 28 27 26 49 49 H 1.08997 * 113.58502 * 139.33256 * 28 27 26 50 50 H 1.09004 * 113.66091 * 13.64974 * 29 26 4 51 51 H 1.09002 * 113.66181 * 144.70326 * 29 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9287 0.5451 -0.3203 6 6 4.0042 2.0553 1.3029 7 6 3.8579 3.4396 0.6453 8 1 4.6973 4.1072 0.8399 9 7 2.5589 4.0717 0.8882 10 6 2.4615 5.1010 1.7529 11 8 3.4509 5.5017 2.3349 12 7 1.2673 5.6861 1.9722 13 6 -0.0034 5.3036 1.3394 14 6 -1.0879 6.2635 1.8725 15 6 -0.2643 7.4913 2.3431 16 8 0.0380 8.3562 1.2464 17 6 -0.9852 8.2389 3.4350 18 1 -1.9474 7.8924 3.7823 19 6 -0.4170 9.3660 3.9899 20 7 0.7543 9.7883 3.5667 21 14 -1.3110 10.2931 5.3429 22 1 -1.5252 9.3911 6.5030 23 1 -0.4951 11.4595 5.7663 24 1 -2.6238 10.7663 4.8349 25 6 1.0179 6.8115 2.8913 26 6 3.9472 2.7175 -0.6997 27 6 5.2489 2.6978 -1.5017 28 6 4.3696 2.6032 -2.7618 29 6 3.2510 3.2726 -1.9428 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8901 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.0389 1.7705 1.4941 36 1 3.3588 1.9141 2.1699 37 1 1.7695 3.7521 0.4238 38 1 0.0777 5.4005 0.2567 39 1 -0.2535 4.2756 1.6017 40 1 -1.7789 6.5443 1.0776 41 1 -1.6229 5.8143 2.7093 42 1 0.5514 9.1380 1.4920 43 1 1.1542 10.5810 3.9574 44 1 0.8521 6.4445 3.9042 45 1 1.8548 7.5097 2.8721 46 1 5.8184 3.6248 -1.4343 47 1 5.8579 1.8112 -1.3256 48 1 4.1404 1.5795 -3.0576 49 1 4.7281 3.2137 -3.5906 50 1 2.2639 2.8450 -2.1190 51 1 3.2589 4.3611 -1.9993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591967343.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:44 Heat of formation + Delta-G solvation = -96.579861 kcal Electronic energy + Delta-G solvation = -31371.839333 eV Core-core repulsion = 27272.000536 eV Total energy + Delta-G solvation = -4099.838797 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.11215 -40.84140 -38.97590 -38.16964 -36.07123 -36.02359 -34.15333 -33.61034 -31.81254 -31.35731 -29.56790 -27.20870 -26.59677 -25.70465 -25.30648 -24.09249 -23.60130 -21.88510 -21.44419 -20.85107 -19.67608 -19.15547 -18.76175 -17.47518 -17.30840 -16.94305 -16.81218 -16.68544 -16.54892 -16.13649 -15.99936 -15.42294 -15.03936 -14.87437 -14.65755 -14.40961 -13.99285 -13.80498 -13.74042 -13.50640 -13.45259 -13.31118 -13.22543 -12.91658 -12.81337 -12.71748 -12.52962 -12.42712 -12.32225 -12.24471 -12.11444 -12.08178 -11.90555 -11.39447 -11.28858 -11.21992 -11.11003 -10.97715 -10.64123 -10.34477 -10.28897 -10.01445 -9.30459 -8.25151 -6.42693 1.43893 1.44404 1.53039 1.65787 2.14498 2.38349 2.51593 3.00675 3.08122 3.44960 3.56042 3.78464 3.79174 3.82499 3.89827 3.98508 4.10729 4.17322 4.24856 4.25924 4.31571 4.43056 4.49791 4.55763 4.60169 4.63328 4.74769 4.75426 4.81012 4.88491 4.93573 4.96636 5.00436 5.03461 5.07774 5.09808 5.11170 5.15828 5.30096 5.33238 5.37406 5.41319 5.44459 5.56521 5.68956 5.76432 6.02810 6.21364 6.38812 6.64439 7.09284 7.30023 7.39215 7.60453 8.80451 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016996 B = 0.002970 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.040954 B = 9425.963880 C =10062.076972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.382 6.382 4 C 0.105 3.895 5 H 0.103 0.897 6 C -0.170 4.170 7 C 0.140 3.860 8 H 0.071 0.929 9 N -0.702 5.702 10 C 0.710 3.290 11 O -0.647 6.647 12 N -0.633 5.633 13 C 0.112 3.888 14 C -0.109 4.109 15 C 0.234 3.766 16 O -0.590 6.590 17 C -0.558 4.558 18 H 0.072 0.928 19 C 0.024 3.976 20 N -0.919 5.919 21 Si 0.968 3.032 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.268 1.268 25 C 0.128 3.872 26 C -0.111 4.111 27 C -0.100 4.100 28 C -0.126 4.126 29 C -0.126 4.126 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.116 0.884 36 H 0.058 0.942 37 H 0.408 0.592 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.377 0.623 43 H 0.271 0.729 44 H 0.041 0.959 45 H 0.036 0.964 46 H 0.083 0.917 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.682 -22.379 -11.864 25.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.301 6.301 4 C 0.047 3.953 5 H 0.121 0.879 6 C -0.209 4.209 7 C 0.034 3.966 8 H 0.089 0.911 9 N -0.356 5.356 10 C 0.412 3.588 11 O -0.530 6.530 12 N -0.369 5.369 13 C -0.010 4.010 14 C -0.147 4.147 15 C 0.193 3.807 16 O -0.399 6.399 17 C -0.596 4.596 18 H 0.090 0.910 19 C -0.176 4.176 20 N -0.559 5.559 21 Si 0.793 3.207 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.192 1.192 25 C 0.004 3.996 26 C -0.112 4.112 27 C -0.138 4.138 28 C -0.164 4.164 29 C -0.163 4.163 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.134 0.866 36 H 0.077 0.923 37 H 0.244 0.756 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.227 0.773 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.102 0.898 47 H 0.112 0.888 48 H 0.113 0.887 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.110 -22.297 -11.777 25.549 hybrid contribution -0.058 1.289 1.328 1.851 sum 4.052 -21.009 -10.449 23.811 Atomic orbital electron populations 1.21767 0.93361 1.03201 1.02532 1.22689 0.95877 0.82696 1.00881 1.87824 1.19797 1.28061 1.94409 1.22692 0.81695 0.96930 0.94004 0.87925 1.24057 1.02664 0.96051 0.98094 1.21606 0.84665 0.93326 0.96996 0.91123 1.44476 1.11689 1.33826 1.45622 1.15767 0.82167 0.80279 0.80572 1.90819 1.37137 1.68796 1.56245 1.47822 1.06774 1.36062 1.46276 1.22026 0.82891 0.98901 0.97227 1.22597 0.96677 0.93819 1.01600 1.19869 0.88918 0.87273 0.84603 1.86049 1.77376 1.39149 1.37309 1.21818 1.06003 1.11491 1.20262 0.90995 1.25874 0.95195 0.97781 0.98770 1.69692 1.17128 1.25077 1.43963 0.85459 0.78518 0.77756 0.79000 1.19478 1.21118 1.19240 1.22730 1.00043 0.85856 0.90983 1.23253 1.00221 0.95685 0.92028 1.22594 0.93675 1.03468 0.94047 1.22809 0.95496 1.01647 0.96399 1.22532 0.99212 0.99564 0.95027 0.89313 0.93037 0.92063 0.91695 0.93063 0.86623 0.92307 0.75572 0.91571 0.89899 0.89602 0.89170 0.77261 0.91996 0.94104 0.94509 0.89815 0.88786 0.88693 0.90762 0.90932 0.91809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.75 6.50 71.98 0.47 1.22 16 3 O -0.38 -7.41 8.72 -148.98 -1.30 -8.71 16 4 C 0.11 1.84 4.18 30.99 0.13 1.96 16 5 H 0.10 1.23 7.87 -2.39 -0.02 1.21 16 6 C -0.17 -3.79 7.74 31.33 0.24 -3.55 16 7 C 0.14 3.97 4.09 45.28 0.19 4.15 16 8 H 0.07 2.38 7.51 -2.39 -0.02 2.36 16 9 N -0.70 -23.55 4.91 -456.41 -2.24 -25.79 16 10 C 0.71 31.62 8.49 179.05 1.52 33.14 16 11 O -0.65 -34.42 16.22 -3.99 -0.06 -34.48 16 12 N -0.63 -28.16 3.32 -829.28 -2.76 -30.92 16 13 C 0.11 4.00 6.15 86.73 0.53 4.53 16 14 C -0.11 -4.32 6.12 31.78 0.19 -4.13 16 15 C 0.23 11.78 0.89 -10.07 -0.01 11.77 16 16 O -0.59 -31.80 13.19 -148.98 -1.97 -33.76 16 17 C -0.56 -29.65 8.25 25.60 0.21 -29.44 16 18 H 0.07 3.65 7.76 -2.91 -0.02 3.63 16 19 C 0.02 1.29 5.30 84.66 0.45 1.74 16 20 N -0.92 -51.54 10.72 21.45 0.23 -51.31 16 21 Si 0.97 42.43 29.54 68.60 2.03 44.46 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 23 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 24 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 25 C 0.13 6.64 5.64 86.93 0.49 7.13 16 26 C -0.11 -2.17 0.83 -52.31 -0.04 -2.21 16 27 C -0.10 -1.49 7.84 30.88 0.24 -1.24 16 28 C -0.13 -1.74 8.08 31.23 0.25 -1.49 16 29 C -0.13 -2.48 7.32 30.89 0.23 -2.25 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.66 8.14 -2.38 -0.02 0.65 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 12.30 6.58 -92.71 -0.61 11.69 16 38 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.09 3.29 8.01 -2.38 -0.02 3.27 16 42 H 0.38 21.46 6.93 -74.05 -0.51 20.95 16 43 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 44 H 0.04 2.19 8.03 -2.39 -0.02 2.17 16 45 H 0.04 2.20 7.64 -2.39 -0.02 2.18 16 46 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 49 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.07 1.44 7.83 -2.38 -0.02 1.42 16 51 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -69.65 404.25 -0.44 -70.09 By element: Atomic # 1 Polarization: 50.51 SS G_CDS: -0.20 Total: 50.31 kcal Atomic # 6 Polarization: 14.28 SS G_CDS: 5.83 Total: 20.11 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.77 Total: -108.02 kcal Atomic # 8 Polarization: -73.62 SS G_CDS: -3.33 Total: -76.95 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -69.65 -0.44 -70.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591967343.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.488 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds