Wall clock time and date at job start Tue Mar 31 2020 22:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45196 * 109.47330 * 2 1 4 4 C 1.34225 * 116.99970 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00521 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00197 * 179.97438 * 4 3 2 7 7 C 1.50699 * 110.43530 * 300.70594 * 6 4 3 8 8 O 1.21278 * 119.99852 * 239.29744 * 7 6 4 9 9 N 1.34783 * 119.99991 * 59.29477 * 7 6 4 10 10 C 1.46493 * 119.99914 * 180.02562 * 9 7 6 11 11 C 1.53035 * 109.46185 * 204.99972 * 10 9 7 12 12 C 1.53194 * 109.31618 * 178.61035 * 11 10 9 13 13 N 1.46925 * 108.77112 * 54.64135 * 12 11 10 14 14 C 1.36927 * 120.63534 * 126.41528 * 13 12 11 15 15 H 1.08001 * 120.00618 * 207.94201 * 14 13 12 16 16 C 1.38820 * 120.00081 * 27.94124 * 14 13 12 17 17 N 1.31615 * 119.99968 * 17.51930 * 16 14 13 18 18 Si 1.86799 * 119.99918 * 197.52506 * 16 14 13 19 19 H 1.48501 * 109.47488 * 94.06659 * 18 16 14 20 20 H 1.48502 * 109.46661 * 214.06718 * 18 16 14 21 21 H 1.48495 * 109.47274 * 334.06079 * 18 16 14 22 22 C 1.46931 * 118.73572 * 306.38465 * 13 12 11 23 23 C 1.53045 * 109.46247 * 84.92975 * 10 9 7 24 24 C 1.54896 * 110.48570 * 63.24528 * 6 4 3 25 25 C 1.55233 * 102.58678 * 156.67802 * 24 6 4 26 26 C 1.54257 * 104.23498 * 322.08279 * 25 24 6 27 27 C 1.53876 * 106.59740 * 23.61341 * 26 25 24 28 28 H 1.09002 * 109.46831 * 60.00176 * 1 2 3 29 29 H 1.09004 * 109.47247 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47010 * 300.00081 * 1 2 3 31 31 H 1.08997 * 109.47316 * 239.99539 * 2 1 3 32 32 H 1.09009 * 109.47093 * 120.00122 * 2 1 3 33 33 H 0.96996 * 120.00055 * 0.02562 * 9 7 6 34 34 H 1.09012 * 109.45053 * 324.96566 * 10 9 7 35 35 H 1.08998 * 109.49966 * 298.56810 * 11 10 9 36 36 H 1.09008 * 109.49835 * 58.66491 * 11 10 9 37 37 H 1.08999 * 109.58540 * 174.41802 * 12 11 10 38 38 H 1.08993 * 109.58690 * 294.84691 * 12 11 10 39 39 H 0.96996 * 120.00010 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.58574 * 293.82691 * 22 13 12 41 41 H 1.09003 * 109.70391 * 173.47043 * 22 13 12 42 42 H 1.09002 * 109.49409 * 301.33755 * 23 10 9 43 43 H 1.08996 * 109.49258 * 61.43678 * 23 10 9 44 44 H 1.08997 * 110.75353 * 275.06911 * 24 6 4 45 45 H 1.08993 * 110.75549 * 38.43823 * 24 6 4 46 46 H 1.09002 * 110.46608 * 203.39272 * 25 24 6 47 47 H 1.09001 * 110.58361 * 80.83563 * 25 24 6 48 48 H 1.09004 * 110.03584 * 264.32940 * 26 25 24 49 49 H 1.09000 * 110.03326 * 142.89313 * 26 25 24 50 50 H 1.09007 * 110.02858 * 240.71281 * 27 26 25 51 51 H 1.09001 * 110.03298 * 119.28457 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4563 3.6984 -1.2149 8 8 4.2674 4.1354 -2.0034 9 7 2.1393 3.8934 -1.4250 10 6 1.6876 4.6328 -2.6063 11 6 0.3145 5.2485 -2.3282 12 6 -0.1391 6.0496 -3.5527 13 7 -0.0979 5.1743 -4.7321 14 6 -1.2009 5.0261 -5.5298 15 1 -1.3475 4.1109 -6.0842 16 6 -2.1309 6.0523 -5.6260 17 7 -1.8075 7.2710 -5.2485 18 14 -3.8412 5.7034 -6.2912 19 1 -4.7641 5.4241 -5.1618 20 1 -4.3283 6.8846 -7.0480 21 1 -3.7908 4.5244 -7.1925 22 6 1.1495 4.4614 -5.0395 23 6 1.5886 3.6782 -3.7984 24 6 3.5239 3.6887 1.2950 25 6 4.6329 4.7684 1.4131 26 6 5.9146 4.0484 0.9456 27 6 5.4618 2.8841 0.0471 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.4905 3.5441 -0.7942 34 1 2.4014 5.4248 -2.8336 35 1 -0.4054 4.4556 -2.1251 36 1 0.3806 5.9104 -1.4646 37 1 -1.1571 6.4074 -3.3987 38 1 0.5296 6.8971 -3.7030 39 1 -2.4574 7.9879 -5.3154 40 1 1.9233 5.1795 -5.3112 41 1 0.9843 3.7717 -5.8673 42 1 2.5618 3.2224 -3.9812 43 1 0.8568 2.9001 -3.5815 44 1 2.5420 4.1498 1.1884 45 1 3.5453 3.0171 2.1532 46 1 4.7358 5.0975 2.4471 47 1 4.4131 5.6161 0.7641 48 1 6.4624 3.6646 1.8063 49 1 6.5429 4.7352 0.3785 50 1 5.7900 1.9354 0.4718 51 1 5.8705 3.0059 -0.9560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592592230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:56 Heat of formation + Delta-G solvation = -136.763074 kcal Electronic energy + Delta-G solvation = -31548.629650 eV Core-core repulsion = 27447.048378 eV Total energy + Delta-G solvation = -4101.581272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.45664 -40.88089 -39.35110 -38.20415 -37.49305 -36.07069 -34.03218 -32.81817 -31.92663 -31.45743 -30.48587 -29.71481 -26.96085 -24.93665 -24.44323 -23.87184 -23.23516 -22.63728 -21.45944 -21.19174 -20.38638 -19.50896 -18.67375 -18.08638 -17.80971 -17.29006 -17.14150 -16.79036 -16.18134 -15.86997 -15.60538 -15.37555 -15.16590 -15.10643 -14.80544 -14.53546 -14.51466 -14.15026 -14.07725 -13.71035 -13.32716 -13.23428 -13.03428 -12.98310 -12.66817 -12.60822 -12.55921 -12.50203 -12.42030 -12.25598 -12.23714 -12.09289 -12.01725 -11.88733 -11.60996 -11.58562 -11.55880 -11.42400 -11.30442 -10.88313 -10.55455 -10.07965 -8.71384 -7.87628 -5.32955 0.77381 1.20311 1.49183 1.50256 1.59658 1.71865 2.05089 2.52379 3.03828 3.27923 3.35657 3.53509 3.64485 3.69268 3.88733 4.00759 4.02139 4.05096 4.15924 4.28025 4.30578 4.33172 4.36213 4.43813 4.44601 4.62195 4.63524 4.74788 4.80532 4.82694 4.84285 4.94455 4.94941 4.98816 5.01279 5.03299 5.10911 5.13778 5.18862 5.21724 5.27031 5.37589 5.40308 5.46274 5.48693 5.64971 5.71480 6.38694 6.45568 6.47196 7.10066 7.14831 7.83806 8.36924 9.19466 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014485 B = 0.003219 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.587864 B = 8695.453258 C = 9728.708896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.057 3.943 3 O -0.352 6.352 4 C 0.483 3.517 5 O -0.519 6.519 6 C -0.078 4.078 7 C 0.529 3.471 8 O -0.560 6.560 9 N -0.700 5.700 10 C 0.162 3.838 11 C -0.127 4.127 12 C 0.180 3.820 13 N -0.608 5.608 14 C -0.265 4.265 15 H 0.066 0.934 16 C -0.046 4.046 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.270 1.270 22 C 0.146 3.854 23 C -0.124 4.124 24 C -0.099 4.099 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.104 4.104 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.414 0.586 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.064 0.936 38 H -0.004 1.004 39 H 0.251 0.749 40 H 0.008 0.992 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.102 0.898 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.064 0.936 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -11.462 19.497 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.268 6.268 4 C 0.325 3.675 5 O -0.407 6.407 6 C -0.083 4.083 7 C 0.314 3.686 8 O -0.439 6.439 9 N -0.351 5.351 10 C 0.058 3.942 11 C -0.167 4.167 12 C 0.053 3.947 13 N -0.331 5.331 14 C -0.395 4.395 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.579 5.579 18 Si 0.796 3.204 19 H -0.208 1.208 20 H -0.223 1.223 21 H -0.195 1.195 22 C 0.020 3.980 23 C -0.164 4.164 24 C -0.137 4.137 25 C -0.160 4.160 26 C -0.155 4.155 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.117 0.883 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.014 0.986 39 H 0.060 0.940 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.123 0.877 46 H 0.121 0.879 47 H 0.076 0.924 48 H 0.109 0.891 49 H 0.083 0.917 50 H 0.107 0.893 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.027 -11.340 18.899 23.818 hybrid contribution -0.967 -0.188 -0.808 1.274 sum 8.060 -11.528 18.092 22.917 Atomic orbital electron populations 1.21844 0.90518 1.04409 1.03838 1.23336 0.96914 0.78612 1.02767 1.86456 1.22883 1.34342 1.83154 1.23101 0.81265 0.91330 0.71775 1.90649 1.61009 1.43097 1.45991 1.21772 0.99334 0.89320 0.97859 1.20061 0.82773 0.79890 0.85909 1.90700 1.54243 1.51586 1.47357 1.46079 1.06746 1.55935 1.26365 1.20724 0.95914 0.93189 0.84368 1.22257 0.94683 1.00409 0.99337 1.20569 0.99668 0.90127 0.84305 1.44334 1.08563 1.52934 1.27288 1.19513 0.99126 0.98046 1.22832 0.91632 1.25777 1.03133 0.94338 1.00937 1.70182 1.34570 0.99928 1.53238 0.85254 0.80332 0.76925 0.77918 1.20843 1.22347 1.19513 1.20928 0.87681 0.94008 0.95394 1.22174 1.00070 0.98370 0.95826 1.22751 1.00868 0.97569 0.92517 1.22458 0.93383 0.96975 1.03196 1.22118 0.98181 0.95968 0.99227 1.22149 0.88596 1.01301 1.02174 0.92109 0.88255 0.90399 0.91985 0.90055 0.74809 0.91893 0.91157 0.90072 0.91747 0.98579 0.93983 0.97408 0.92552 0.92782 0.91630 0.88731 0.87686 0.87939 0.92445 0.89101 0.91671 0.89320 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 10.29 71.98 0.74 -1.10 16 2 C 0.06 0.94 6.19 71.98 0.45 1.38 16 3 O -0.35 -7.08 8.71 -51.37 -0.45 -7.52 16 4 C 0.48 11.36 6.59 71.24 0.47 11.83 16 5 O -0.52 -14.48 15.19 21.95 0.33 -14.14 16 6 C -0.08 -1.75 0.68 -52.60 -0.04 -1.78 16 7 C 0.53 15.17 6.26 87.66 0.55 15.72 16 8 O -0.56 -20.46 15.09 -3.02 -0.05 -20.51 16 9 N -0.70 -18.86 4.66 -442.40 -2.06 -20.93 16 10 C 0.16 5.47 2.42 45.02 0.11 5.58 16 11 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 12 C 0.18 8.40 5.31 86.36 0.46 8.86 16 13 N -0.61 -30.41 2.99 -699.09 -2.09 -32.50 16 14 C -0.27 -14.45 9.58 84.04 0.81 -13.64 16 15 H 0.07 3.50 7.89 -2.91 -0.02 3.48 16 16 C -0.05 -2.53 4.90 84.86 0.42 -2.12 16 17 N -0.93 -54.31 11.22 21.65 0.24 -54.06 16 18 Si 0.97 43.99 29.59 68.60 2.03 46.02 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 C 0.15 6.36 6.51 86.36 0.56 6.92 16 23 C -0.12 -4.51 5.65 30.67 0.17 -4.34 16 24 C -0.10 -1.50 5.81 32.01 0.19 -1.31 16 25 C -0.12 -1.82 6.61 31.79 0.21 -1.61 16 26 C -0.12 -1.96 6.80 31.32 0.21 -1.74 16 27 C -0.10 -2.33 5.54 31.32 0.17 -2.15 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 32 H 0.08 1.17 8.13 -2.38 -0.02 1.15 16 33 H 0.41 9.16 7.05 -92.71 -0.65 8.50 16 34 H 0.06 2.43 7.58 -2.38 -0.02 2.41 16 35 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 37 H 0.06 3.37 6.06 -2.39 -0.01 3.35 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.34 16 40 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.06 2.40 7.94 -2.39 -0.02 2.38 16 42 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.09 1.27 7.63 -2.39 -0.02 1.26 16 45 H 0.10 1.18 8.05 -2.39 -0.02 1.16 16 46 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.09 1.93 6.88 -2.38 -0.02 1.91 16 51 H 0.07 1.83 6.86 -2.39 -0.02 1.81 16 Total: -1.00 -69.31 399.84 3.86 -65.45 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: 0.26 Total: 21.94 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 5.65 Total: 16.26 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -3.91 Total: -107.49 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.16 Total: -42.18 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -69.31 3.86 -65.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592592230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.315 kcal (2) G-P(sol) polarization free energy of solvation -69.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds