Wall clock time and date at job start Tue Mar 31 2020 22:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45197 * 109.47136 * 2 1 4 4 C 1.34231 * 117.00233 * 180.02562 * 3 2 1 5 5 O 1.20834 * 119.99819 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00506 * 180.02562 * 4 3 2 7 7 C 1.52998 * 110.05388 * 58.57726 * 6 4 3 8 8 C 1.54264 * 110.02979 * 297.16243 * 6 4 3 9 9 C 1.54886 * 104.19555 * 217.10403 * 8 6 4 10 10 C 1.54884 * 102.74879 * 37.94479 * 9 8 6 11 11 C 1.53874 * 110.03484 * 179.97438 * 6 4 3 12 12 H 1.09000 * 110.03051 * 359.94178 * 11 6 4 13 13 N 1.46502 * 110.02693 * 238.56880 * 11 6 4 14 14 C 1.34777 * 119.99805 * 154.99894 * 13 11 6 15 15 O 1.21585 * 120.00139 * 0.02562 * 14 13 11 16 16 N 1.34778 * 120.00211 * 179.97438 * 14 13 11 17 17 C 1.46501 * 120.00078 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.47068 * 181.04891 * 17 16 14 19 19 C 1.50698 * 115.54707 * 39.68155 * 18 17 16 20 20 H 1.08002 * 120.00494 * 264.53371 * 19 18 17 21 21 C 1.37875 * 120.00049 * 84.53402 * 19 18 17 22 22 N 1.31519 * 120.00110 * 352.91574 * 21 19 18 23 23 Si 1.86796 * 120.00227 * 172.91437 * 21 19 18 24 24 H 1.48499 * 109.47076 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47165 * 120.00204 * 23 21 19 26 26 H 1.48496 * 109.47278 * 240.00165 * 23 21 19 27 27 C 1.52994 * 117.49715 * 253.97377 * 18 17 16 28 28 C 1.52995 * 117.49595 * 185.35038 * 18 17 16 29 29 H 1.09004 * 109.46615 * 60.00499 * 1 2 3 30 30 H 1.08999 * 109.46778 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47295 * 300.00345 * 1 2 3 32 32 H 1.08999 * 109.47295 * 239.99655 * 2 1 3 33 33 H 1.09009 * 109.46965 * 119.99847 * 2 1 3 34 34 H 1.09002 * 109.46928 * 181.41950 * 7 6 4 35 35 H 1.09004 * 109.47615 * 301.41898 * 7 6 4 36 36 H 1.08999 * 109.47664 * 61.42365 * 7 6 4 37 37 H 1.09006 * 110.48821 * 335.78268 * 8 6 4 38 38 H 1.09000 * 110.48663 * 98.29491 * 8 6 4 39 39 H 1.09005 * 110.75395 * 156.26162 * 9 8 6 40 40 H 1.09000 * 110.75442 * 279.43929 * 9 8 6 41 41 H 1.09004 * 110.48633 * 203.38238 * 10 9 8 42 42 H 1.09000 * 110.49057 * 80.73664 * 10 9 8 43 43 H 0.97000 * 120.00587 * 334.71718 * 13 11 6 44 44 H 0.96995 * 119.99687 * 0.02562 * 16 14 13 45 45 H 1.08999 * 109.47182 * 301.05317 * 17 16 14 46 46 H 1.08998 * 109.47002 * 61.05521 * 17 16 14 47 47 H 0.96999 * 120.00554 * 185.03032 * 22 21 19 48 48 H 1.09001 * 117.50545 * 0.02562 * 27 18 17 49 49 H 1.09005 * 117.49732 * 145.02392 * 27 18 17 50 50 H 1.09003 * 117.49403 * 214.97774 * 28 18 17 51 51 H 1.08992 * 117.50557 * 359.97438 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 3.4296 3.7079 1.2271 8 6 3.5108 3.6793 -1.2888 9 6 4.7577 4.5220 -1.6550 10 6 5.9286 3.5763 -1.2900 11 6 5.4582 2.8719 -0.0001 12 1 5.7876 1.8329 0.0005 13 7 5.9900 3.5672 1.1746 14 6 7.2017 3.2354 1.6627 15 8 7.8536 2.3594 1.1279 16 7 7.6913 3.8753 2.7431 17 6 9.0082 3.5143 3.2740 18 6 9.3118 4.3666 4.5078 19 6 8.1477 4.6071 5.4342 20 1 7.5624 5.5101 5.3429 21 6 7.8298 3.6741 6.3983 22 7 8.4504 2.5148 6.4215 23 14 6.5178 4.0568 7.6717 24 1 5.9747 5.4175 7.4293 25 1 5.4213 3.0608 7.5673 26 1 7.1140 3.9961 9.0303 27 6 10.3372 5.4917 4.3542 28 6 10.6992 4.2285 5.1378 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 3.8313 4.7209 1.2049 35 1 2.3403 3.7488 1.2186 36 1 3.7671 3.2031 2.1323 37 1 3.2845 2.9678 -2.0831 38 1 2.6531 4.3252 -1.1008 39 1 4.7671 4.7554 -2.7198 40 1 4.7949 5.4350 -1.0607 41 1 6.8370 4.1488 -1.1021 42 1 6.0929 2.8482 -2.0843 43 1 5.4720 4.2691 1.5987 44 1 7.1715 4.5744 3.1696 45 1 9.0118 2.4600 3.5508 46 1 9.7680 3.6928 2.5132 47 1 8.1771 1.8309 7.0527 48 1 10.7952 5.6251 3.3741 49 1 10.1699 6.4063 4.9233 50 1 10.7700 4.3119 6.2223 51 1 11.3955 3.5301 4.6736 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595593637.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:53 Heat of formation + Delta-G solvation = -99.615023 kcal Electronic energy + Delta-G solvation = -30782.353108 eV Core-core repulsion = 26682.382697 eV Total energy + Delta-G solvation = -4099.970412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23168 -39.55923 -38.12920 -36.67442 -36.52343 -33.31011 -32.93326 -32.29808 -32.00024 -31.29226 -27.94547 -26.15205 -25.90269 -25.05128 -23.95214 -22.21676 -21.21080 -21.06492 -20.11180 -19.44862 -19.15915 -17.93488 -17.46559 -16.69862 -16.57660 -16.35575 -15.73072 -15.02639 -14.70754 -14.68265 -14.37850 -14.21968 -14.02456 -13.74924 -13.48464 -13.22579 -13.06639 -12.92868 -12.72253 -12.51078 -12.20896 -12.14009 -12.06039 -11.84291 -11.59131 -11.49227 -11.34281 -11.09407 -11.05229 -10.97274 -10.89583 -10.79355 -10.73421 -10.53104 -10.25976 -10.21223 -9.66129 -9.40208 -8.92201 -8.72226 -8.50856 -8.25670 -7.77589 -6.09043 -4.18353 2.09222 2.40074 3.22138 3.31766 3.32731 3.36958 3.91040 4.11268 4.30144 4.32614 4.48332 4.66072 4.69538 4.75917 4.97582 5.00191 5.02169 5.07183 5.19842 5.22757 5.35175 5.36922 5.41169 5.48209 5.50932 5.55556 5.61671 5.66344 5.69064 5.79858 5.93689 6.04205 6.08711 6.14064 6.23396 6.30672 6.35685 6.53177 6.62637 6.75458 6.92655 6.95832 7.12326 7.38576 7.44166 7.51640 7.63212 7.72113 7.79313 8.34868 8.81449 8.86099 9.37683 9.48739 10.98609 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.003235 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.074134 B = 8652.335253 C = 9969.937988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.354 6.354 4 C 0.472 3.528 5 O -0.495 6.495 6 C -0.063 4.063 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.123 4.123 10 C -0.133 4.133 11 C 0.169 3.831 12 H 0.114 0.886 13 N -0.748 5.748 14 C 0.697 3.303 15 O -0.604 6.604 16 N -0.713 5.713 17 C 0.184 3.816 18 C 0.029 3.971 19 C -0.504 4.504 20 H 0.060 0.940 21 C 0.077 3.923 22 N -0.868 5.868 23 Si 0.887 3.113 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.283 1.283 27 C -0.211 4.211 28 C -0.153 4.153 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.394 0.606 44 H 0.399 0.601 45 H 0.064 0.936 46 H 0.033 0.967 47 H 0.261 0.739 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 2.394 -14.816 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.272 6.272 4 C 0.314 3.686 5 O -0.381 6.381 6 C -0.065 4.065 7 C -0.202 4.202 8 C -0.145 4.145 9 C -0.161 4.161 10 C -0.172 4.172 11 C 0.063 3.937 12 H 0.132 0.868 13 N -0.407 5.407 14 C 0.397 3.603 15 O -0.483 6.483 16 N -0.366 5.366 17 C 0.060 3.940 18 C 0.028 3.972 19 C -0.541 4.541 20 H 0.079 0.921 21 C -0.128 4.128 22 N -0.503 5.503 23 Si 0.715 3.285 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.209 1.209 27 C -0.248 4.248 28 C -0.191 4.191 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.230 0.770 44 H 0.234 0.766 45 H 0.082 0.918 46 H 0.051 0.949 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.394 1.094 -15.109 20.897 hybrid contribution -1.148 0.402 1.292 1.774 sum -15.542 1.496 -13.818 20.850 Atomic orbital electron populations 1.21797 0.92578 1.02958 1.03485 1.23052 0.95348 0.80332 1.02767 1.86485 1.24335 1.32241 1.84092 1.23467 0.80593 0.92339 0.72181 1.90705 1.60165 1.42775 1.44465 1.21395 0.96138 0.89427 0.99526 1.21884 1.02130 1.00255 0.95955 1.22432 0.99059 0.98600 0.94370 1.22533 0.93863 0.98223 1.01467 1.22823 0.98673 0.98716 0.96977 1.21292 0.87993 0.99575 0.84883 0.86797 1.45381 1.19632 1.42573 1.33148 1.16050 0.81103 0.82049 0.81122 1.90862 1.59849 1.34736 1.62853 1.45098 1.21555 1.40732 1.29190 1.20690 0.80689 0.99651 0.92983 1.19040 0.89935 0.94296 0.93897 1.20310 1.13578 1.05531 1.14710 0.92143 1.24983 0.95842 0.95060 0.96889 1.69990 1.39842 1.04222 1.36271 0.86624 0.81557 0.78403 0.81922 1.19668 1.21113 1.20927 1.23079 1.08045 0.93845 0.99831 1.22494 1.00133 0.97883 0.98556 0.91520 0.90270 0.91417 0.91239 0.91112 0.90471 0.90757 0.90948 0.91012 0.89877 0.90982 0.90901 0.90292 0.90749 0.76953 0.76552 0.91775 0.94867 0.92894 0.91600 0.90476 0.89963 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.56 6.19 37.16 0.23 0.79 16 3 O -0.35 -4.02 10.08 -39.26 -0.40 -4.42 16 4 C 0.47 6.34 6.44 36.00 0.23 6.57 16 5 O -0.50 -8.41 14.96 -18.76 -0.28 -8.69 16 6 C -0.06 -0.72 0.88 -154.55 -0.14 -0.85 16 7 C -0.14 -1.43 6.96 37.16 0.26 -1.17 16 8 C -0.11 -0.91 5.88 -25.08 -0.15 -1.06 16 9 C -0.12 -1.06 6.91 -24.74 -0.17 -1.23 16 10 C -0.13 -1.60 6.54 -25.05 -0.16 -1.76 16 11 C 0.17 2.42 2.83 -66.79 -0.19 2.24 16 12 H 0.11 2.10 5.82 -51.93 -0.30 1.80 16 13 N -0.75 -11.56 4.46 -57.56 -0.26 -11.81 16 14 C 0.70 14.22 8.56 -86.92 -0.74 13.48 16 15 O -0.60 -14.69 16.00 5.29 0.08 -14.61 16 16 N -0.71 -14.79 5.34 -65.22 -0.35 -15.13 16 17 C 0.18 4.30 5.75 -4.04 -0.02 4.27 16 18 C 0.03 0.69 1.71 -155.66 -0.27 0.42 16 19 C -0.50 -12.69 7.43 -34.44 -0.26 -12.94 16 20 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 21 C 0.08 2.02 5.39 -17.82 -0.10 1.92 16 22 N -0.87 -24.08 12.97 55.43 0.72 -23.37 16 23 Si 0.89 20.20 29.55 -169.99 -5.02 15.17 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 C -0.21 -4.43 9.88 -26.73 -0.26 -4.70 16 28 C -0.15 -3.51 9.51 -26.73 -0.25 -3.77 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.08 0.63 6.93 -51.93 -0.36 0.27 16 35 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.07 0.85 7.72 -51.93 -0.40 0.45 16 37 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 38 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.39 5.01 5.85 -40.82 -0.24 4.78 16 44 H 0.40 7.71 7.47 -40.82 -0.30 7.41 16 45 H 0.06 1.71 8.14 -51.93 -0.42 1.29 16 46 H 0.03 0.75 7.94 -51.93 -0.41 0.34 16 47 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 48 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 49 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 50 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 51 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 411.27 15.07 6.20 6.20 Total: -1.00 -32.25 411.27 -9.62 -41.87 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -8.71 Total: 13.18 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.61 Total: 1.61 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.11 Total: -50.31 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.59 Total: -27.71 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.25 -9.62 -41.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595593637.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.748 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds