Wall clock time and date at job start Tue Mar 31 2020 22:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46789 * 2 1 4 4 C 1.34235 * 116.99958 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99614 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00139 * 180.02562 * 4 3 2 7 7 C 1.53004 * 110.05381 * 301.41659 * 6 4 3 8 8 C 1.54265 * 110.03257 * 62.83345 * 6 4 3 9 9 C 1.54881 * 104.19488 * 142.89578 * 8 6 4 10 10 C 1.55009 * 102.75701 * 322.04760 * 9 8 6 11 11 C 1.53871 * 110.03194 * 180.02562 * 6 4 3 12 12 H 1.08995 * 110.03135 * 0.04564 * 11 6 4 13 13 N 1.46498 * 110.03183 * 121.43021 * 11 6 4 14 14 C 1.34781 * 120.00055 * 204.30962 * 13 11 6 15 15 O 1.21584 * 119.99406 * 359.97438 * 14 13 11 16 16 N 1.34776 * 119.99780 * 180.02562 * 14 13 11 17 17 C 1.46500 * 119.99475 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47200 * 182.80853 * 17 16 14 19 19 C 1.50699 * 115.55811 * 319.97491 * 18 17 16 20 20 H 1.07997 * 120.00139 * 95.36754 * 19 18 17 21 21 C 1.37879 * 119.99903 * 275.36608 * 19 18 17 22 22 N 1.31510 * 120.00183 * 7.28091 * 21 19 18 23 23 Si 1.86795 * 119.99926 * 187.27535 * 21 19 18 24 24 H 1.48501 * 109.47312 * 60.00288 * 23 21 19 25 25 H 1.48505 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47424 * 300.00074 * 23 21 19 27 27 C 1.52999 * 117.49958 * 174.28332 * 18 17 16 28 28 C 1.52993 * 60.03183 * 252.51996 * 27 18 17 29 29 H 1.09000 * 109.47205 * 60.00398 * 1 2 3 30 30 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47228 * 299.99939 * 1 2 3 32 32 H 1.08998 * 109.47228 * 240.00061 * 2 1 3 33 33 H 1.09000 * 109.47205 * 119.99602 * 2 1 3 34 34 H 1.08994 * 109.46932 * 298.58645 * 7 6 4 35 35 H 1.09006 * 109.46939 * 58.58786 * 7 6 4 36 36 H 1.09004 * 109.47083 * 178.57941 * 7 6 4 37 37 H 1.09007 * 110.48706 * 261.57475 * 8 6 4 38 38 H 1.09002 * 110.48496 * 24.21583 * 8 6 4 39 39 H 1.09002 * 110.75688 * 80.37844 * 9 8 6 40 40 H 1.09003 * 110.75838 * 203.55474 * 9 8 6 41 41 H 1.09004 * 110.50506 * 279.29985 * 10 9 8 42 42 H 1.09001 * 110.52765 * 156.61378 * 10 9 8 43 43 H 0.96999 * 120.00223 * 24.30553 * 13 11 6 44 44 H 0.96993 * 120.00171 * 359.97438 * 16 14 13 45 45 H 1.09002 * 109.47270 * 62.80894 * 17 16 14 46 46 H 1.09001 * 109.47455 * 302.80383 * 17 16 14 47 47 H 0.96998 * 120.00653 * 174.98322 * 22 21 19 48 48 H 1.09004 * 117.49207 * 145.01686 * 27 18 17 49 49 H 1.08997 * 117.49948 * 0.03085 * 27 18 17 50 50 H 1.09001 * 117.49635 * 107.48035 * 28 27 18 51 51 H 1.09002 * 117.50332 * 252.47589 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9207 2.9375 0.0012 7 6 3.4293 3.7091 -1.2254 8 6 3.5107 3.6784 1.2907 9 6 4.7575 4.5208 1.6574 10 6 5.9296 3.5748 1.2914 11 6 5.4580 2.8721 0.0010 12 1 5.7874 1.8331 -0.0003 13 7 5.9898 3.5684 -1.1731 14 6 7.2074 3.2467 -1.6532 15 8 7.8645 2.3789 -1.1115 16 7 7.6969 3.8876 -2.7330 17 6 9.0206 3.5383 -3.2545 18 6 9.3635 4.4546 -4.4308 19 6 8.2263 4.7576 -5.3720 20 1 7.6455 5.6591 -5.2447 21 6 7.9273 3.8837 -6.3958 22 7 8.5368 2.7206 -6.4666 23 14 6.6563 4.3519 -7.6821 24 1 7.0914 5.5878 -8.3810 25 1 6.5184 3.2485 -8.6664 26 1 5.3481 4.5914 -7.0213 27 6 10.7659 4.3384 -5.0314 28 6 10.3944 5.5599 -4.1885 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7667 3.2049 -2.1309 35 1 2.3401 3.7499 -1.2166 36 1 3.8310 4.7221 -1.2023 37 1 2.6544 4.3262 1.1026 38 1 3.2845 2.9662 2.0842 39 1 4.7965 5.4328 1.0616 40 1 4.7654 4.7561 2.7217 41 1 6.0937 2.8456 2.0849 42 1 6.8382 4.1468 1.1038 43 1 5.4657 4.2609 -1.6050 44 1 7.1727 4.5801 -3.1649 45 1 9.0166 2.5014 -3.5908 46 1 9.7653 3.6624 -2.4683 47 1 8.2754 2.0763 -7.1429 48 1 10.8658 4.4810 -6.1075 49 1 11.4440 3.6088 -4.5889 50 1 10.8279 5.6338 -3.1911 51 1 10.2504 6.5063 -4.7097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595593640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:59 Heat of formation + Delta-G solvation = -99.599027 kcal Electronic energy + Delta-G solvation = -30755.614541 eV Core-core repulsion = 26655.644823 eV Total energy + Delta-G solvation = -4099.969718 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23856 -39.56468 -38.13033 -36.67695 -36.52388 -33.31333 -32.93348 -32.30065 -32.00636 -31.29481 -27.94805 -26.15666 -25.90588 -25.05244 -23.95630 -22.22216 -21.21082 -21.06596 -20.10997 -19.45096 -19.15793 -17.93088 -17.47311 -16.70467 -16.58125 -16.35742 -15.73419 -15.02338 -14.71267 -14.68875 -14.38460 -14.22615 -14.02382 -13.75276 -13.48515 -13.23411 -13.07371 -12.92482 -12.72242 -12.51219 -12.21436 -12.14315 -12.05956 -11.84883 -11.59794 -11.48881 -11.34275 -11.09556 -11.02744 -10.97909 -10.92097 -10.79576 -10.74180 -10.55412 -10.26634 -10.21163 -9.66372 -9.40747 -8.92956 -8.72586 -8.51136 -8.25172 -7.77621 -6.09355 -4.18939 2.08453 2.39343 3.23121 3.30800 3.31315 3.36793 3.90595 4.10650 4.29737 4.32163 4.47898 4.65432 4.68919 4.75226 4.97505 4.99589 5.02069 5.06672 5.19403 5.22556 5.34691 5.36978 5.40954 5.47605 5.50616 5.55408 5.61086 5.65897 5.68595 5.79926 5.92991 6.04084 6.08759 6.14234 6.23193 6.29965 6.35872 6.53444 6.63023 6.75736 6.92458 6.96295 7.12556 7.38035 7.44155 7.51347 7.62398 7.72147 7.78567 8.34733 8.80741 8.86099 9.37290 9.48078 10.98197 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003181 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.984459 B = 8799.092838 C =10067.001509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.354 6.354 4 C 0.473 3.527 5 O -0.495 6.495 6 C -0.063 4.063 7 C -0.145 4.145 8 C -0.107 4.107 9 C -0.124 4.124 10 C -0.133 4.133 11 C 0.169 3.831 12 H 0.114 0.886 13 N -0.749 5.749 14 C 0.697 3.303 15 O -0.604 6.604 16 N -0.713 5.713 17 C 0.184 3.816 18 C 0.030 3.970 19 C -0.506 4.506 20 H 0.060 0.940 21 C 0.078 3.922 22 N -0.868 5.868 23 Si 0.889 3.111 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.277 1.277 27 C -0.153 4.153 28 C -0.211 4.211 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.394 0.606 44 H 0.400 0.600 45 H 0.063 0.937 46 H 0.035 0.965 47 H 0.262 0.738 48 H 0.082 0.918 49 H 0.065 0.935 50 H 0.065 0.935 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 1.816 14.773 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.272 6.272 4 C 0.314 3.686 5 O -0.381 6.381 6 C -0.065 4.065 7 C -0.203 4.203 8 C -0.145 4.145 9 C -0.161 4.161 10 C -0.172 4.172 11 C 0.063 3.937 12 H 0.131 0.869 13 N -0.408 5.408 14 C 0.396 3.604 15 O -0.484 6.484 16 N -0.366 5.366 17 C 0.060 3.940 18 C 0.029 3.971 19 C -0.544 4.544 20 H 0.078 0.922 21 C -0.127 4.127 22 N -0.503 5.503 23 Si 0.717 3.283 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.203 1.203 27 C -0.191 4.191 28 C -0.248 4.248 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.231 0.769 44 H 0.235 0.765 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.654 0.524 15.063 21.021 hybrid contribution -1.134 0.476 -1.304 1.792 sum -15.787 1.000 13.759 20.966 Atomic orbital electron populations 1.21797 0.92575 1.02960 1.03490 1.23051 0.95352 0.80327 1.02763 1.86488 1.24333 1.32242 1.84089 1.23463 0.80593 0.92332 0.72173 1.90701 1.60171 1.42774 1.44478 1.21393 0.96118 0.89430 0.99539 1.21888 1.02156 1.00268 0.95944 1.22432 0.99079 0.98596 0.94345 1.22557 0.93852 0.98235 1.01464 1.22843 0.98666 0.98717 0.96938 1.21286 0.87988 0.99522 0.84930 0.86861 1.45393 1.18927 1.43381 1.33068 1.16057 0.81161 0.82008 0.81133 1.90861 1.59742 1.35246 1.62502 1.45124 1.20954 1.41322 1.29243 1.20686 0.80610 0.99447 0.93278 1.19035 0.89710 0.94042 0.94297 1.20243 1.15355 1.07288 1.11479 0.92226 1.24982 0.95738 0.94942 0.97076 1.69966 1.40206 1.05874 1.34267 0.86727 0.81712 0.78165 0.81743 1.20172 1.21321 1.20274 1.22497 1.00124 0.98181 0.98268 1.23086 1.08272 0.94281 0.99165 0.91418 0.90268 0.91515 0.91116 0.91236 0.90967 0.90734 0.90444 0.89870 0.90992 0.90913 0.90963 0.90759 0.90273 0.76933 0.76460 0.91917 0.94689 0.92761 0.89965 0.91665 0.91605 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -3.99 10.08 -39.27 -0.40 -4.38 16 4 C 0.47 6.29 6.44 36.01 0.23 6.52 16 5 O -0.50 -8.34 14.96 -18.75 -0.28 -8.62 16 6 C -0.06 -0.71 0.88 -154.54 -0.14 -0.85 16 7 C -0.15 -1.43 6.95 37.16 0.26 -1.17 16 8 C -0.11 -0.91 5.88 -25.08 -0.15 -1.06 16 9 C -0.12 -1.07 6.91 -24.68 -0.17 -1.24 16 10 C -0.13 -1.60 6.55 -24.98 -0.16 -1.77 16 11 C 0.17 2.42 2.81 -66.79 -0.19 2.23 16 12 H 0.11 2.08 5.84 -51.93 -0.30 1.78 16 13 N -0.75 -11.57 4.49 -57.56 -0.26 -11.82 16 14 C 0.70 14.20 8.56 -86.91 -0.74 13.45 16 15 O -0.60 -14.65 16.01 5.29 0.08 -14.56 16 16 N -0.71 -14.83 5.37 -65.22 -0.35 -15.18 16 17 C 0.18 4.30 5.75 -4.04 -0.02 4.28 16 18 C 0.03 0.71 1.71 -155.62 -0.27 0.44 16 19 C -0.51 -12.73 7.40 -34.44 -0.26 -12.99 16 20 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 21 C 0.08 2.03 5.39 -17.82 -0.10 1.93 16 22 N -0.87 -23.99 12.97 55.43 0.72 -23.27 16 23 Si 0.89 20.14 29.55 -169.99 -5.02 15.12 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 C -0.15 -3.52 9.51 -26.74 -0.25 -3.77 16 28 C -0.21 -4.45 9.88 -26.70 -0.26 -4.72 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.07 0.64 8.13 -51.93 -0.42 0.21 16 34 H 0.07 0.84 7.71 -51.93 -0.40 0.44 16 35 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.08 0.63 6.94 -51.93 -0.36 0.27 16 37 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 38 H 0.07 0.61 7.85 -51.93 -0.41 0.20 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 43 H 0.39 5.04 5.81 -40.82 -0.24 4.81 16 44 H 0.40 7.79 7.41 -40.82 -0.30 7.49 16 45 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 46 H 0.03 0.80 7.95 -51.93 -0.41 0.39 16 47 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 48 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 49 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 50 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 51 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 411.24 15.07 6.20 6.20 Total: -1.00 -32.02 411.24 -9.62 -41.64 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: -8.71 Total: 13.39 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -1.61 Total: 1.50 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.11 Total: -50.28 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.59 Total: -27.57 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.02 -9.62 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595593640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.959 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds