Wall clock time and date at job start Tue Mar 31 2020 22:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46789 * 2 1 4 4 C 1.34235 * 116.99958 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99614 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00139 * 180.02562 * 4 3 2 7 7 C 1.53004 * 110.05381 * 301.41659 * 6 4 3 8 8 C 1.54265 * 110.03257 * 62.83345 * 6 4 3 9 9 C 1.54881 * 104.19488 * 142.89578 * 8 6 4 10 10 C 1.55009 * 102.75701 * 322.04760 * 9 8 6 11 11 C 1.53871 * 110.03194 * 180.02562 * 6 4 3 12 12 H 1.08995 * 110.03135 * 0.04564 * 11 6 4 13 13 N 1.46498 * 110.03183 * 121.43021 * 11 6 4 14 14 C 1.34781 * 120.00055 * 204.30962 * 13 11 6 15 15 O 1.21584 * 119.99406 * 359.97438 * 14 13 11 16 16 N 1.34776 * 119.99780 * 180.02562 * 14 13 11 17 17 C 1.46500 * 119.99475 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.47200 * 182.80853 * 17 16 14 19 19 C 1.50699 * 115.55811 * 319.97491 * 18 17 16 20 20 H 1.07997 * 120.00139 * 95.36754 * 19 18 17 21 21 C 1.37879 * 119.99903 * 275.36608 * 19 18 17 22 22 N 1.31510 * 120.00183 * 7.28091 * 21 19 18 23 23 Si 1.86795 * 119.99926 * 187.27535 * 21 19 18 24 24 H 1.48501 * 109.47312 * 60.00288 * 23 21 19 25 25 H 1.48505 * 109.47120 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47424 * 300.00074 * 23 21 19 27 27 C 1.52999 * 117.49958 * 174.28332 * 18 17 16 28 28 C 1.52993 * 60.03183 * 252.51996 * 27 18 17 29 29 H 1.09000 * 109.47205 * 60.00398 * 1 2 3 30 30 H 1.09004 * 109.47026 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47228 * 299.99939 * 1 2 3 32 32 H 1.08998 * 109.47228 * 240.00061 * 2 1 3 33 33 H 1.09000 * 109.47205 * 119.99602 * 2 1 3 34 34 H 1.08994 * 109.46932 * 298.58645 * 7 6 4 35 35 H 1.09006 * 109.46939 * 58.58786 * 7 6 4 36 36 H 1.09004 * 109.47083 * 178.57941 * 7 6 4 37 37 H 1.09007 * 110.48706 * 261.57475 * 8 6 4 38 38 H 1.09002 * 110.48496 * 24.21583 * 8 6 4 39 39 H 1.09002 * 110.75688 * 80.37844 * 9 8 6 40 40 H 1.09003 * 110.75838 * 203.55474 * 9 8 6 41 41 H 1.09004 * 110.50506 * 279.29985 * 10 9 8 42 42 H 1.09001 * 110.52765 * 156.61378 * 10 9 8 43 43 H 0.96999 * 120.00223 * 24.30553 * 13 11 6 44 44 H 0.96993 * 120.00171 * 359.97438 * 16 14 13 45 45 H 1.09002 * 109.47270 * 62.80894 * 17 16 14 46 46 H 1.09001 * 109.47455 * 302.80383 * 17 16 14 47 47 H 0.96998 * 120.00653 * 174.98322 * 22 21 19 48 48 H 1.09004 * 117.49207 * 145.01686 * 27 18 17 49 49 H 1.08997 * 117.49948 * 0.03085 * 27 18 17 50 50 H 1.09001 * 117.49635 * 107.48035 * 28 27 18 51 51 H 1.09002 * 117.50332 * 252.47589 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9207 2.9375 0.0012 7 6 3.4293 3.7091 -1.2254 8 6 3.5107 3.6784 1.2907 9 6 4.7575 4.5208 1.6574 10 6 5.9296 3.5748 1.2914 11 6 5.4580 2.8721 0.0010 12 1 5.7874 1.8331 -0.0003 13 7 5.9898 3.5684 -1.1731 14 6 7.2074 3.2467 -1.6532 15 8 7.8645 2.3789 -1.1115 16 7 7.6969 3.8876 -2.7330 17 6 9.0206 3.5383 -3.2545 18 6 9.3635 4.4546 -4.4308 19 6 8.2263 4.7576 -5.3720 20 1 7.6455 5.6591 -5.2447 21 6 7.9273 3.8837 -6.3958 22 7 8.5368 2.7206 -6.4666 23 14 6.6563 4.3519 -7.6821 24 1 7.0914 5.5878 -8.3810 25 1 6.5184 3.2485 -8.6664 26 1 5.3481 4.5914 -7.0213 27 6 10.7659 4.3384 -5.0314 28 6 10.3944 5.5599 -4.1885 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.7667 3.2049 -2.1309 35 1 2.3401 3.7499 -1.2166 36 1 3.8310 4.7221 -1.2023 37 1 2.6544 4.3262 1.1026 38 1 3.2845 2.9662 2.0842 39 1 4.7965 5.4328 1.0616 40 1 4.7654 4.7561 2.7217 41 1 6.0937 2.8456 2.0849 42 1 6.8382 4.1468 1.1038 43 1 5.4657 4.2609 -1.6050 44 1 7.1727 4.5801 -3.1649 45 1 9.0166 2.5014 -3.5908 46 1 9.7653 3.6624 -2.4683 47 1 8.2754 2.0763 -7.1429 48 1 10.8658 4.4810 -6.1075 49 1 11.4440 3.6088 -4.5889 50 1 10.8279 5.6338 -3.1911 51 1 10.2504 6.5063 -4.7097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595593640.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:58 Heat of formation + Delta-G solvation = -118.707046 kcal Electronic energy + Delta-G solvation = -30756.443127 eV Core-core repulsion = 26655.644823 eV Total energy + Delta-G solvation = -4100.798304 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.29382 -40.96187 -39.39319 -38.36673 -37.65216 -34.97104 -34.37723 -33.98007 -33.09208 -32.06559 -29.13729 -27.71684 -27.01118 -26.80295 -24.80856 -23.15521 -22.92012 -22.23241 -21.42191 -21.19220 -20.35522 -19.40065 -18.50933 -18.12806 -17.62827 -17.58682 -17.18650 -16.68185 -16.32328 -16.01599 -15.74378 -15.52378 -15.17054 -14.86324 -14.80203 -14.48301 -14.37187 -13.97357 -13.82085 -13.66272 -13.48300 -13.42267 -13.05456 -12.95802 -12.92703 -12.77521 -12.62307 -12.56278 -12.37162 -12.22305 -12.00655 -11.95239 -11.89993 -11.59763 -11.57734 -11.49717 -11.25750 -11.21334 -10.82124 -10.45763 -10.27542 -10.00763 -9.50879 -8.08172 -6.22566 1.04752 1.44042 1.44293 1.47323 1.53169 1.94185 2.28066 2.43438 3.14953 3.19019 3.38813 3.43610 3.59139 3.70165 3.86491 3.95711 4.04794 4.21906 4.24699 4.28359 4.30416 4.31698 4.53082 4.55160 4.63596 4.69951 4.72069 4.74839 4.78055 4.85387 4.90075 4.90724 5.00937 5.02022 5.07868 5.10917 5.16066 5.20316 5.24122 5.27861 5.36580 5.39559 5.49900 5.61637 5.63674 5.76084 5.80915 6.18902 6.39215 6.61384 6.85594 7.29135 7.47705 7.73783 8.98992 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011902 B = 0.003181 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2351.984459 B = 8799.092838 C =10067.001509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.346 6.346 4 C 0.471 3.529 5 O -0.542 6.542 6 C -0.059 4.059 7 C -0.146 4.146 8 C -0.098 4.098 9 C -0.111 4.111 10 C -0.132 4.132 11 C 0.162 3.838 12 H 0.066 0.934 13 N -0.726 5.726 14 C 0.693 3.307 15 O -0.647 6.647 16 N -0.709 5.709 17 C 0.198 3.802 18 C 0.007 3.993 19 C -0.506 4.506 20 H 0.070 0.930 21 C 0.029 3.971 22 N -0.906 5.906 23 Si 0.949 3.051 24 H -0.270 1.270 25 H -0.297 1.297 26 H -0.264 1.264 27 C -0.164 4.164 28 C -0.178 4.178 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.410 0.590 44 H 0.408 0.592 45 H 0.019 0.981 46 H 0.037 0.963 47 H 0.257 0.743 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.087 0.913 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 4.753 15.816 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.262 6.262 4 C 0.315 3.685 5 O -0.432 6.432 6 C -0.060 4.060 7 C -0.203 4.203 8 C -0.135 4.135 9 C -0.148 4.148 10 C -0.171 4.171 11 C 0.056 3.944 12 H 0.084 0.916 13 N -0.386 5.386 14 C 0.393 3.607 15 O -0.530 6.530 16 N -0.363 5.363 17 C 0.073 3.927 18 C 0.006 3.994 19 C -0.543 4.543 20 H 0.088 0.912 21 C -0.172 4.172 22 N -0.543 5.543 23 Si 0.775 3.225 24 H -0.195 1.195 25 H -0.224 1.224 26 H -0.188 1.188 27 C -0.202 4.202 28 C -0.215 4.215 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.250 0.750 44 H 0.245 0.755 45 H 0.037 0.963 46 H 0.055 0.945 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.554 3.525 16.118 24.091 hybrid contribution -0.249 -0.514 -1.589 1.689 sum -17.803 3.011 14.529 23.176 Atomic orbital electron populations 1.21804 0.89716 1.04370 1.04049 1.23320 0.97525 0.79424 1.02169 1.86489 1.23001 1.33311 1.83414 1.23956 0.80981 0.92699 0.70858 1.90693 1.61290 1.44411 1.46768 1.21440 0.93474 0.88909 1.02224 1.21948 1.03739 1.00767 0.93818 1.22481 1.00025 0.98617 0.92407 1.22543 0.91552 0.97579 1.03130 1.22790 0.99667 0.99176 0.95485 1.21363 0.90507 0.97191 0.85377 0.91592 1.45198 1.17130 1.43178 1.33082 1.16242 0.82217 0.81415 0.80817 1.90830 1.61367 1.37122 1.63717 1.44927 1.20368 1.41576 1.29410 1.20346 0.81996 0.97050 0.93292 1.19101 0.89910 0.95863 0.94493 1.20563 1.15416 1.07137 1.11228 0.91232 1.25714 0.97708 0.94794 0.99007 1.70121 1.42069 1.07013 1.35054 0.85752 0.80044 0.77471 0.79194 1.19546 1.22361 1.18828 1.22437 1.00146 1.00007 0.97614 1.23082 1.05262 0.93461 0.99708 0.91217 0.88467 0.90494 0.92436 0.91324 0.93373 0.88441 0.88063 0.86703 0.90807 0.89459 0.88773 0.91140 0.91924 0.75009 0.75516 0.96301 0.94496 0.93389 0.91729 0.91372 0.89467 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 10.29 71.98 0.74 -0.79 16 2 C 0.05 0.90 6.19 71.98 0.45 1.35 16 3 O -0.35 -7.40 10.08 -51.46 -0.52 -7.91 16 4 C 0.47 12.54 6.44 71.24 0.46 13.00 16 5 O -0.54 -19.33 14.96 21.98 0.33 -19.00 16 6 C -0.06 -1.25 0.88 -52.20 -0.05 -1.29 16 7 C -0.15 -2.49 6.95 71.98 0.50 -1.99 16 8 C -0.10 -1.33 5.88 31.67 0.19 -1.14 16 9 C -0.11 -1.53 6.91 31.92 0.22 -1.31 16 10 C -0.13 -3.12 6.55 31.73 0.21 -2.91 16 11 C 0.16 4.69 2.81 45.73 0.13 4.82 16 12 H 0.07 2.60 5.84 -2.39 -0.01 2.59 16 13 N -0.73 -22.41 4.49 -454.28 -2.04 -24.45 16 14 C 0.69 29.02 8.56 179.05 1.53 30.56 16 15 O -0.65 -33.02 16.01 -3.98 -0.06 -33.08 16 16 N -0.71 -29.81 5.37 -478.53 -2.57 -32.38 16 17 C 0.20 9.51 5.75 86.38 0.50 10.01 16 18 C 0.01 0.33 1.71 -52.90 -0.09 0.24 16 19 C -0.51 -25.13 7.40 25.60 0.19 -24.94 16 20 H 0.07 3.25 7.82 -2.91 -0.02 3.23 16 21 C 0.03 1.52 5.39 84.66 0.46 1.97 16 22 N -0.91 -51.39 12.97 21.45 0.28 -51.12 16 23 Si 0.95 41.08 29.55 68.60 2.03 43.11 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 26 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 27 C -0.16 -7.59 9.51 30.59 0.29 -7.30 16 28 C -0.18 -7.21 9.88 30.62 0.30 -6.91 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.20 8.13 -2.39 -0.02 1.18 16 33 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 34 H 0.05 1.07 7.71 -2.39 -0.02 1.05 16 35 H 0.10 1.27 8.09 -2.38 -0.02 1.25 16 36 H 0.10 1.25 6.94 -2.39 -0.02 1.23 16 37 H 0.11 0.94 7.84 -2.38 -0.02 0.92 16 38 H 0.07 1.02 7.85 -2.39 -0.02 1.00 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 43 H 0.41 9.88 5.81 -92.71 -0.54 9.34 16 44 H 0.41 15.61 7.41 -92.71 -0.69 14.93 16 45 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.04 1.72 7.95 -2.39 -0.02 1.71 16 47 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 48 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 50 H 0.09 3.17 8.09 -2.39 -0.02 3.15 16 51 H 0.09 3.37 8.14 -2.39 -0.02 3.36 16 Total: -1.00 -73.62 411.24 3.17 -70.45 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: -0.29 Total: 41.01 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 6.02 Total: 13.37 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -4.33 Total: -107.94 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -0.25 Total: -60.00 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -73.62 3.17 -70.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595593640.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.254 kcal (2) G-P(sol) polarization free energy of solvation -73.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds