Wall clock time and date at job start Tue Mar 31 2020 22:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47431 * 2 1 4 4 C 1.34886 * 117.00433 * 180.02562 * 3 2 1 5 5 O 1.21621 * 119.99708 * 359.97438 * 4 3 2 6 6 C 1.46491 * 120.00275 * 179.97438 * 4 3 2 7 7 N 1.37694 * 126.26205 * 359.97438 * 6 4 3 8 8 H 0.97003 * 125.63458 * 359.97155 * 7 6 4 9 9 C 1.34957 * 108.72967 * 180.02562 * 7 6 4 10 10 C 1.50701 * 125.50890 * 179.97438 * 9 7 6 11 11 C 1.35488 * 108.98485 * 359.97438 * 9 7 6 12 12 C 1.50702 * 126.07769 * 180.02562 * 11 9 7 13 13 N 1.46901 * 109.46682 * 262.66606 * 12 11 9 14 14 C 1.46898 * 111.00082 * 198.37747 * 13 12 11 15 15 C 1.50703 * 109.47442 * 176.26775 * 14 13 12 16 16 H 1.08000 * 119.99786 * 4.71490 * 15 14 13 17 17 C 1.37878 * 120.00017 * 184.72481 * 15 14 13 18 18 N 1.31512 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99820 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47366 * 59.99419 * 19 17 15 21 21 H 1.48498 * 109.47294 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46860 * 299.99263 * 19 17 15 23 23 C 1.46900 * 111.00025 * 74.42609 * 13 12 11 24 24 C 1.53000 * 109.47260 * 60.11556 * 23 13 12 25 25 O 1.42899 * 109.47093 * 68.56086 * 24 23 13 26 26 C 1.42900 * 114.00130 * 180.02562 * 25 24 23 27 27 C 1.37995 * 126.26208 * 180.02562 * 6 4 3 28 28 C 1.50704 * 126.51600 * 0.25813 * 27 6 4 29 29 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46719 * 300.00400 * 1 2 3 31 31 H 1.08994 * 109.46766 * 59.99769 * 1 2 3 32 32 H 1.08997 * 109.47099 * 239.99920 * 2 1 3 33 33 H 1.09000 * 109.47372 * 119.99599 * 2 1 3 34 34 H 1.08998 * 109.46748 * 273.38703 * 10 9 7 35 35 H 1.08997 * 109.46895 * 33.38610 * 10 9 7 36 36 H 1.09000 * 109.47035 * 153.38769 * 10 9 7 37 37 H 1.08999 * 109.47262 * 22.66519 * 12 11 9 38 38 H 1.08998 * 109.47300 * 142.67063 * 12 11 9 39 39 H 1.09000 * 109.47044 * 296.27174 * 14 13 12 40 40 H 1.08997 * 109.46961 * 56.26708 * 14 13 12 41 41 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.46937 * 180.11802 * 23 13 12 43 43 H 1.09002 * 109.46992 * 300.11589 * 23 13 12 44 44 H 1.08999 * 109.47154 * 188.55603 * 24 23 13 45 45 H 1.08997 * 109.47156 * 308.56049 * 24 23 13 46 46 H 1.08994 * 109.46899 * 180.02562 * 26 25 24 47 47 H 1.09010 * 109.46471 * 299.99639 * 26 25 24 48 48 H 1.08995 * 109.47289 * 59.98975 * 26 25 24 49 49 H 1.09003 * 109.47061 * 269.69022 * 28 27 6 50 50 H 1.08994 * 109.47342 * 29.68980 * 28 27 6 51 51 H 1.09001 * 109.46834 * 149.69270 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3513 1.5457 -0.0005 5 8 4.0922 0.5812 -0.0005 6 6 3.9113 2.8994 -0.0011 7 7 3.1967 4.0764 -0.0017 8 1 2.2295 4.1503 -0.0022 9 6 4.0642 5.1101 -0.0027 10 6 3.6873 6.5692 -0.0042 11 6 5.3290 4.6241 -0.0022 12 6 6.5943 5.4427 -0.0025 13 7 7.1016 5.5595 -1.3762 14 6 8.5164 5.9545 -1.3831 15 6 9.0255 5.9749 -2.8014 16 1 8.3463 5.7945 -3.6215 17 6 10.3583 6.2236 -3.0520 18 7 11.1852 6.4435 -2.0534 19 14 10.9890 6.2495 -4.8100 20 1 10.2771 7.3038 -5.5759 21 1 12.4458 6.5374 -4.8091 22 1 10.7455 4.9282 -5.4427 23 6 6.2887 6.4995 -2.1595 24 6 6.3329 7.8811 -1.5037 25 8 7.6459 8.4293 -1.6356 26 6 7.7960 9.7253 -1.0527 27 6 5.2515 3.2283 -0.0022 28 6 6.4111 2.2658 -0.0085 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.5376 6.9047 -1.0304 35 1 2.7656 6.7069 0.5612 36 1 4.4860 7.1513 0.4556 37 1 6.3842 6.4365 0.3929 38 1 7.3431 4.9544 0.6211 39 1 8.6184 6.9479 -0.9461 40 1 9.0961 5.2396 -0.7992 41 1 12.1228 6.6189 -2.2296 42 1 6.6849 6.5654 -3.1729 43 1 5.2580 6.1467 -2.1946 44 1 5.6140 8.5385 -1.9927 45 1 6.0817 7.7899 -0.4470 46 1 8.8197 10.0715 -1.1954 47 1 7.1074 10.4212 -1.5320 48 1 7.5752 9.6720 0.0133 49 1 6.6961 2.0336 1.0177 50 1 6.1195 1.3490 -0.5208 51 1 7.2563 2.7186 -0.5267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600118618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:43 Heat of formation + Delta-G solvation = -78.678271 kcal Electronic energy + Delta-G solvation = -30828.938766 eV Core-core repulsion = 26729.876240 eV Total energy + Delta-G solvation = -4099.062526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53295 -39.95887 -38.04657 -36.62145 -35.70657 -32.83022 -32.58300 -32.07887 -31.36441 -29.16706 -28.06140 -26.76353 -26.61369 -25.74684 -24.29618 -23.43980 -22.51503 -21.68665 -20.04557 -19.49573 -18.61028 -17.98038 -16.79779 -16.70390 -16.25058 -16.03451 -15.83264 -15.15911 -15.08201 -14.53137 -14.23791 -14.15658 -13.89578 -13.51592 -13.45104 -13.23895 -13.07987 -12.89676 -12.71752 -12.60390 -12.17701 -12.10364 -12.07822 -11.88722 -11.73389 -11.55958 -11.51555 -11.28240 -10.99407 -10.94867 -10.86507 -10.73430 -10.58709 -10.53611 -10.30941 -10.05217 -9.64795 -8.95958 -8.87875 -8.35391 -8.17098 -7.92102 -6.90455 -5.78241 -3.73736 1.30030 2.51444 2.71469 3.16782 3.24046 3.47100 3.50011 3.53664 4.50150 4.63052 4.64004 4.64669 4.80043 4.83290 4.98408 5.07115 5.19709 5.36454 5.37285 5.40838 5.45341 5.47880 5.59781 5.61513 5.63875 5.71603 5.73869 5.80445 5.88355 5.93965 5.97136 6.10711 6.18679 6.19467 6.23321 6.27297 6.38830 6.41164 6.61094 6.63571 6.85236 7.02645 7.15925 7.47778 7.52514 7.78823 7.82239 7.94080 8.00384 8.30193 8.47837 8.81482 9.28981 9.85748 11.33684 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003012 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.394008 B = 9294.909505 C =10504.464079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.369 6.369 4 C 0.538 3.462 5 O -0.500 6.500 6 C -0.069 4.069 7 N -0.531 5.531 8 H 0.417 0.583 9 C 0.067 3.933 10 C -0.094 4.094 11 C -0.150 4.150 12 C 0.117 3.883 13 N -0.524 5.524 14 C 0.184 3.816 15 C -0.481 4.481 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.902 5.902 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.065 3.935 24 C 0.021 3.979 25 O -0.337 6.337 26 C 0.028 3.972 27 C -0.022 4.022 28 C -0.096 4.096 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.023 0.977 41 H 0.256 0.744 42 H 0.090 0.910 43 H 0.064 0.936 44 H 0.032 0.968 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.026 0.974 48 H 0.028 0.972 49 H 0.064 0.936 50 H 0.073 0.927 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.439 -2.847 7.168 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.009 4.009 3 O -0.287 6.287 4 C 0.385 3.615 5 O -0.389 6.389 6 C -0.178 4.178 7 N -0.127 5.127 8 H 0.254 0.746 9 C -0.052 4.052 10 C -0.151 4.151 11 C -0.157 4.157 12 C -0.012 4.012 13 N -0.247 5.247 14 C 0.060 3.940 15 C -0.520 4.520 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.543 5.543 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.064 4.064 24 C -0.057 4.057 25 O -0.255 6.255 26 C -0.070 4.070 27 C -0.031 4.031 28 C -0.153 4.153 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.046 0.954 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.108 0.892 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.100 0.900 47 H 0.045 0.955 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.081 -3.758 6.883 22.493 hybrid contribution -0.311 0.945 -0.466 1.099 sum -21.392 -2.813 6.417 22.510 Atomic orbital electron populations 1.21808 0.92757 1.02973 1.03371 1.22979 0.95076 0.80072 1.02767 1.86543 1.24441 1.32560 1.85179 1.19785 0.80114 0.88292 0.73300 1.90874 1.60006 1.40977 1.47010 1.18891 0.91148 0.82789 1.24923 1.41505 1.08605 1.04716 1.57909 0.74587 1.20243 0.89499 0.89910 1.05545 1.20566 1.02365 0.89126 1.03071 1.19273 0.93579 0.92836 1.10014 1.20447 0.92124 0.95920 0.92665 1.62286 1.05711 1.47654 1.09039 1.20033 0.80425 0.95761 0.97815 1.20986 0.93147 1.45698 0.92156 0.92669 1.24829 0.96961 0.96165 0.96342 1.69938 1.03884 1.50196 1.30270 0.86728 0.77410 0.78246 0.85903 1.20634 1.21722 1.20555 1.22162 0.97160 0.86969 1.00059 1.23428 0.85667 0.97292 0.99336 1.88556 1.28194 1.30061 1.78658 1.22664 1.01776 0.86345 0.96184 1.19891 0.91275 0.94188 0.97787 1.20434 0.95439 0.97521 1.01926 0.90198 0.91607 0.91535 0.91109 0.91185 0.90390 0.91662 0.89584 0.94751 0.90757 0.95413 0.95902 0.93431 0.89218 0.91763 0.94956 0.94028 0.90045 0.95549 0.95341 0.91774 0.90796 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.60 6.20 37.16 0.23 0.83 16 3 O -0.37 -4.37 10.23 -41.00 -0.42 -4.79 16 4 C 0.54 7.84 7.93 34.06 0.27 8.11 16 5 O -0.50 -8.35 14.61 -19.36 -0.28 -8.64 16 6 C -0.07 -1.02 7.10 -82.00 -0.58 -1.60 16 7 N -0.53 -6.31 6.07 -5.82 -0.04 -6.35 16 8 H 0.42 3.68 8.96 -40.82 -0.37 3.32 16 9 C 0.07 0.85 6.55 -82.20 -0.54 0.32 16 10 C -0.09 -0.90 9.28 36.01 0.33 -0.56 16 11 C -0.15 -2.37 5.07 -105.02 -0.53 -2.90 16 12 C 0.12 2.06 4.88 -4.97 -0.02 2.04 16 13 N -0.52 -10.94 4.68 -237.51 -1.11 -12.05 16 14 C 0.18 4.69 4.14 -4.98 -0.02 4.67 16 15 C -0.48 -13.48 8.21 -34.44 -0.28 -13.76 16 16 H 0.06 1.55 6.49 -52.49 -0.34 1.21 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 19 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 23 C 0.07 1.22 5.46 -3.82 -0.02 1.20 16 24 C 0.02 0.36 5.44 37.16 0.20 0.56 16 25 O -0.34 -6.92 7.20 -35.23 -0.25 -7.18 16 26 C 0.03 0.45 11.01 101.05 1.11 1.56 16 27 C -0.02 -0.37 6.22 -104.13 -0.65 -1.02 16 28 C -0.10 -1.60 9.66 36.01 0.35 -1.25 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.71 7.59 -51.93 -0.39 0.32 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.86 5.52 -51.93 -0.29 0.57 16 37 H 0.03 0.57 4.48 -51.93 -0.23 0.34 16 38 H 0.07 1.38 7.86 -51.93 -0.41 0.97 16 39 H 0.03 0.76 5.31 -51.93 -0.28 0.48 16 40 H 0.02 0.65 7.99 -51.93 -0.41 0.23 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.09 1.92 6.25 -51.93 -0.32 1.59 16 43 H 0.06 1.05 6.07 -51.93 -0.32 0.74 16 44 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.04 0.64 4.20 -51.93 -0.22 0.42 16 46 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 47 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 50 H 0.07 1.25 6.49 -51.93 -0.34 0.92 16 51 H 0.08 1.54 8.02 -51.93 -0.42 1.13 16 LS Contribution 402.91 15.07 6.07 6.07 Total: -1.00 -33.46 402.91 -8.30 -41.75 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -8.11 Total: 1.08 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.13 Total: -0.83 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.41 Total: -44.76 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.96 Total: -20.60 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.46 -8.30 -41.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600118618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.926 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds