Wall clock time and date at job start Tue Mar 31 2020 22:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45202 * 109.47431 * 2 1 4 4 C 1.34886 * 117.00433 * 180.02562 * 3 2 1 5 5 O 1.21621 * 119.99708 * 359.97438 * 4 3 2 6 6 C 1.46491 * 120.00275 * 179.97438 * 4 3 2 7 7 N 1.37694 * 126.26205 * 359.97438 * 6 4 3 8 8 H 0.97003 * 125.63458 * 359.97155 * 7 6 4 9 9 C 1.34957 * 108.72967 * 180.02562 * 7 6 4 10 10 C 1.50701 * 125.50890 * 179.97438 * 9 7 6 11 11 C 1.35488 * 108.98485 * 359.97438 * 9 7 6 12 12 C 1.50702 * 126.07769 * 180.02562 * 11 9 7 13 13 N 1.46901 * 109.46682 * 262.66606 * 12 11 9 14 14 C 1.46898 * 111.00082 * 198.37747 * 13 12 11 15 15 C 1.50703 * 109.47442 * 176.26775 * 14 13 12 16 16 H 1.08000 * 119.99786 * 4.71490 * 15 14 13 17 17 C 1.37878 * 120.00017 * 184.72481 * 15 14 13 18 18 N 1.31512 * 120.00158 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99820 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47366 * 59.99419 * 19 17 15 21 21 H 1.48498 * 109.47294 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46860 * 299.99263 * 19 17 15 23 23 C 1.46900 * 111.00025 * 74.42609 * 13 12 11 24 24 C 1.53000 * 109.47260 * 60.11556 * 23 13 12 25 25 O 1.42899 * 109.47093 * 68.56086 * 24 23 13 26 26 C 1.42900 * 114.00130 * 180.02562 * 25 24 23 27 27 C 1.37995 * 126.26208 * 180.02562 * 6 4 3 28 28 C 1.50704 * 126.51600 * 0.25813 * 27 6 4 29 29 H 1.08997 * 109.46926 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46719 * 300.00400 * 1 2 3 31 31 H 1.08994 * 109.46766 * 59.99769 * 1 2 3 32 32 H 1.08997 * 109.47099 * 239.99920 * 2 1 3 33 33 H 1.09000 * 109.47372 * 119.99599 * 2 1 3 34 34 H 1.08998 * 109.46748 * 273.38703 * 10 9 7 35 35 H 1.08997 * 109.46895 * 33.38610 * 10 9 7 36 36 H 1.09000 * 109.47035 * 153.38769 * 10 9 7 37 37 H 1.08999 * 109.47262 * 22.66519 * 12 11 9 38 38 H 1.08998 * 109.47300 * 142.67063 * 12 11 9 39 39 H 1.09000 * 109.47044 * 296.27174 * 14 13 12 40 40 H 1.08997 * 109.46961 * 56.26708 * 14 13 12 41 41 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.46937 * 180.11802 * 23 13 12 43 43 H 1.09002 * 109.46992 * 300.11589 * 23 13 12 44 44 H 1.08999 * 109.47154 * 188.55603 * 24 23 13 45 45 H 1.08997 * 109.47156 * 308.56049 * 24 23 13 46 46 H 1.08994 * 109.46899 * 180.02562 * 26 25 24 47 47 H 1.09010 * 109.46471 * 299.99639 * 26 25 24 48 48 H 1.08995 * 109.47289 * 59.98975 * 26 25 24 49 49 H 1.09003 * 109.47061 * 269.69022 * 28 27 6 50 50 H 1.08994 * 109.47342 * 29.68980 * 28 27 6 51 51 H 1.09001 * 109.46834 * 149.69270 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3513 1.5457 -0.0005 5 8 4.0922 0.5812 -0.0005 6 6 3.9113 2.8994 -0.0011 7 7 3.1967 4.0764 -0.0017 8 1 2.2295 4.1503 -0.0022 9 6 4.0642 5.1101 -0.0027 10 6 3.6873 6.5692 -0.0042 11 6 5.3290 4.6241 -0.0022 12 6 6.5943 5.4427 -0.0025 13 7 7.1016 5.5595 -1.3762 14 6 8.5164 5.9545 -1.3831 15 6 9.0255 5.9749 -2.8014 16 1 8.3463 5.7945 -3.6215 17 6 10.3583 6.2236 -3.0520 18 7 11.1852 6.4435 -2.0534 19 14 10.9890 6.2495 -4.8100 20 1 10.2771 7.3038 -5.5759 21 1 12.4458 6.5374 -4.8091 22 1 10.7455 4.9282 -5.4427 23 6 6.2887 6.4995 -2.1595 24 6 6.3329 7.8811 -1.5037 25 8 7.6459 8.4293 -1.6356 26 6 7.7960 9.7253 -1.0527 27 6 5.2515 3.2283 -0.0022 28 6 6.4111 2.2658 -0.0085 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.5376 6.9047 -1.0304 35 1 2.7656 6.7069 0.5612 36 1 4.4860 7.1513 0.4556 37 1 6.3842 6.4365 0.3929 38 1 7.3431 4.9544 0.6211 39 1 8.6184 6.9479 -0.9461 40 1 9.0961 5.2396 -0.7992 41 1 12.1228 6.6189 -2.2296 42 1 6.6849 6.5654 -3.1729 43 1 5.2580 6.1467 -2.1946 44 1 5.6140 8.5385 -1.9927 45 1 6.0817 7.7899 -0.4470 46 1 8.8197 10.0715 -1.1954 47 1 7.1074 10.4212 -1.5320 48 1 7.5752 9.6720 0.0133 49 1 6.6961 2.0336 1.0177 50 1 6.1195 1.3490 -0.5208 51 1 7.2563 2.7186 -0.5267 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600118618.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:42 Heat of formation + Delta-G solvation = -100.908739 kcal Electronic energy + Delta-G solvation = -30829.902752 eV Core-core repulsion = 26729.876240 eV Total energy + Delta-G solvation = -4100.026511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.64943 -41.02077 -39.52726 -37.67048 -37.22282 -34.65529 -33.89482 -33.08970 -32.34630 -30.59483 -29.55705 -28.22201 -27.78454 -27.06829 -25.90571 -24.38236 -24.08535 -22.72096 -21.56657 -20.67546 -19.75797 -19.16797 -18.21559 -17.81936 -17.66006 -17.47234 -17.33104 -16.60284 -16.23284 -16.10601 -15.68468 -15.32000 -15.10898 -14.80019 -14.71558 -14.31259 -14.21640 -13.95319 -13.76098 -13.70568 -13.55574 -13.37166 -13.17576 -13.07194 -12.94196 -12.80385 -12.77011 -12.62166 -12.54809 -12.52746 -12.44123 -12.30775 -12.19023 -11.69016 -11.56511 -11.55505 -11.50603 -11.03600 -10.49424 -10.15968 -9.54978 -9.04030 -8.56924 -7.99207 -6.01115 0.17847 1.43789 1.46809 1.52763 1.54173 1.57838 2.05671 2.18283 2.52717 3.17938 3.34970 3.69578 3.81385 3.91940 3.99780 4.07258 4.11227 4.12635 4.22040 4.33682 4.36474 4.46081 4.58319 4.59759 4.63888 4.67362 4.73767 4.74875 4.81226 4.85138 4.87582 4.91179 4.94425 4.97309 5.03172 5.09062 5.16364 5.22494 5.31191 5.34361 5.44424 5.56787 5.78082 5.79103 5.86363 5.96533 6.30591 6.56020 6.60029 6.61814 6.70988 6.93379 7.12640 7.62554 9.12169 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003012 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.394008 B = 9294.909505 C =10504.464079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.362 6.362 4 C 0.540 3.460 5 O -0.530 6.530 6 C -0.076 4.076 7 N -0.509 5.509 8 H 0.435 0.565 9 C 0.095 3.905 10 C -0.097 4.097 11 C -0.180 4.180 12 C 0.127 3.873 13 N -0.537 5.537 14 C 0.204 3.796 15 C -0.486 4.486 16 H 0.050 0.950 17 C 0.004 3.996 18 N -0.935 5.935 19 Si 0.951 3.049 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.276 1.276 23 C 0.069 3.931 24 C 0.025 3.975 25 O -0.386 6.386 26 C 0.026 3.974 27 C -0.051 4.051 28 C -0.087 4.087 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.017 0.983 40 H -0.018 1.018 41 H 0.256 0.744 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.054 0.946 48 H 0.044 0.956 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.087 -1.601 6.958 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.279 6.279 4 C 0.388 3.612 5 O -0.421 6.421 6 C -0.185 4.185 7 N -0.106 5.106 8 H 0.276 0.724 9 C -0.027 4.027 10 C -0.154 4.154 11 C -0.186 4.186 12 C -0.001 4.001 13 N -0.260 5.260 14 C 0.078 3.922 15 C -0.525 4.525 16 H 0.068 0.932 17 C -0.193 4.193 18 N -0.578 5.578 19 Si 0.777 3.223 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.060 4.060 24 C -0.053 4.053 25 O -0.305 6.305 26 C -0.070 4.070 27 C -0.060 4.060 28 C -0.144 4.144 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.034 0.966 40 H 0.000 1.000 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.801 -2.510 6.672 25.805 hybrid contribution 0.702 0.527 -0.357 0.948 sum -24.099 -1.983 6.315 24.991 Atomic orbital electron populations 1.21822 0.89971 1.04514 1.03774 1.23318 0.97173 0.78707 1.02631 1.86537 1.22630 1.34253 1.84511 1.19794 0.80850 0.87885 0.72675 1.90859 1.60912 1.41849 1.48457 1.18784 0.90819 0.83798 1.25116 1.41450 1.09480 1.03535 1.56182 0.72354 1.20604 0.88297 0.91545 1.02229 1.20750 1.03978 0.86076 1.04547 1.19070 0.94030 0.92414 1.13067 1.20281 0.92502 0.96844 0.90425 1.62118 1.03725 1.48716 1.11489 1.19586 0.83026 0.93818 0.95735 1.21277 0.93288 1.44745 0.93208 0.93177 1.25612 0.97344 0.96093 1.00216 1.70071 1.04034 1.51398 1.32267 0.85730 0.76873 0.78399 0.81266 1.19765 1.21337 1.20163 1.22120 0.97636 0.88173 0.98053 1.23445 0.85049 0.96352 1.00467 1.88453 1.30440 1.32141 1.79470 1.22753 1.01787 0.85242 0.97265 1.19963 0.91963 0.94663 0.99403 1.20254 0.95083 0.97242 1.01794 0.88094 0.91035 0.91229 0.91520 0.91226 0.89004 0.88203 0.89690 0.93130 0.93130 0.96560 1.00035 0.93535 0.92437 0.88989 0.91730 0.92244 0.91510 0.92741 0.93770 0.91214 0.91580 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.93 6.20 71.98 0.45 1.38 16 3 O -0.36 -7.99 10.23 -58.01 -0.59 -8.58 16 4 C 0.54 15.41 7.93 69.97 0.55 15.97 16 5 O -0.53 -17.98 14.61 19.44 0.28 -17.69 16 6 C -0.08 -2.16 7.10 40.32 0.29 -1.87 16 7 N -0.51 -10.59 6.07 -172.33 -1.05 -11.64 16 8 H 0.44 5.92 8.96 -92.71 -0.83 5.09 16 9 C 0.09 2.12 6.55 41.44 0.27 2.39 16 10 C -0.10 -1.38 9.28 71.24 0.66 -0.72 16 11 C -0.18 -5.53 5.07 -20.12 -0.10 -5.64 16 12 C 0.13 4.56 4.88 85.56 0.42 4.97 16 13 N -0.54 -22.98 4.68 -905.35 -4.24 -27.22 16 14 C 0.20 10.90 4.14 85.56 0.35 11.25 16 15 C -0.49 -28.17 8.21 25.60 0.21 -27.96 16 16 H 0.05 2.89 6.49 -2.91 -0.02 2.88 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.94 -58.06 13.29 21.45 0.28 -57.77 16 19 Si 0.95 46.66 29.54 68.60 2.03 48.69 16 20 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 23 C 0.07 2.50 5.46 86.30 0.47 2.97 16 24 C 0.02 0.77 5.44 71.98 0.39 1.16 16 25 O -0.39 -15.65 7.20 -148.98 -1.07 -16.73 16 26 C 0.03 0.81 11.01 113.37 1.25 2.06 16 27 C -0.05 -1.69 6.22 -19.54 -0.12 -1.82 16 28 C -0.09 -3.07 9.66 71.24 0.69 -2.38 16 29 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.17 7.59 -2.39 -0.02 1.15 16 35 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 1.31 5.52 -2.39 -0.01 1.30 16 37 H 0.05 1.62 4.48 -2.39 -0.01 1.61 16 38 H 0.05 2.00 7.86 -2.39 -0.02 1.98 16 39 H 0.02 0.94 5.31 -2.39 -0.01 0.93 16 40 H -0.02 -1.12 7.99 -2.39 -0.02 -1.13 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.06 2.47 6.25 -2.38 -0.01 2.45 16 43 H 0.09 2.79 6.07 -2.39 -0.01 2.78 16 44 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.64 4.20 -2.39 -0.01 1.63 16 46 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 48 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 50 H 0.07 2.39 6.49 -2.39 -0.02 2.37 16 51 H 0.06 2.30 8.02 -2.39 -0.02 2.28 16 Total: -1.00 -76.56 402.91 2.75 -73.82 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.12 Total: 15.32 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 6.98 Total: 1.81 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -5.00 Total: -96.63 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.38 Total: -43.00 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.56 2.75 -73.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600118618.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.093 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds