Wall clock time and date at job start Tue Mar 31 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47110 * 2 1 4 4 C 1.34231 * 116.99978 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99747 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.52997 * 112.85376 * 46.65341 * 6 4 3 8 8 C 1.50705 * 109.46971 * 60.27931 * 7 6 4 9 9 O 1.21283 * 119.99775 * 6.00725 * 8 7 6 10 10 N 1.34778 * 120.00158 * 186.00710 * 8 7 6 11 11 C 1.46497 * 119.99868 * 180.02562 * 10 8 7 12 12 C 1.53040 * 109.45653 * 275.06590 * 11 10 8 13 13 C 1.53193 * 109.31017 * 178.61892 * 12 11 10 14 14 N 1.46923 * 108.77916 * 54.63568 * 13 12 11 15 15 C 1.36937 * 120.63679 * 126.41687 * 14 13 12 16 16 H 1.08004 * 119.99532 * 324.72251 * 15 14 13 17 17 C 1.38807 * 120.00711 * 144.72218 * 15 14 13 18 18 N 1.31618 * 119.99611 * 344.81384 * 17 15 14 19 19 Si 1.86798 * 120.00165 * 164.80798 * 17 15 14 20 20 H 1.48493 * 109.47052 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46728 * 120.00049 * 19 17 15 22 22 H 1.48495 * 109.47166 * 239.99927 * 19 17 15 23 23 C 1.46928 * 118.73727 * 306.39122 * 14 13 12 24 24 C 1.53044 * 109.45762 * 155.00159 * 11 10 8 25 25 C 1.53782 * 113.61393 * 275.34797 * 6 4 3 26 26 C 1.53780 * 87.08328 * 220.01920 * 25 6 4 27 27 C 1.53775 * 113.61560 * 177.85449 * 6 4 3 28 28 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47604 * 300.00517 * 1 2 3 30 30 H 1.09001 * 109.47115 * 60.00176 * 1 2 3 31 31 H 1.09002 * 109.46868 * 119.99334 * 2 1 3 32 32 H 1.08997 * 109.47604 * 239.99483 * 2 1 3 33 33 H 1.08994 * 109.47601 * 180.28201 * 7 6 4 34 34 H 1.09008 * 109.47301 * 300.28397 * 7 6 4 35 35 H 0.97002 * 119.99701 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.46189 * 35.02243 * 11 10 8 37 37 H 1.09002 * 109.50241 * 298.56356 * 12 11 10 38 38 H 1.08996 * 109.50229 * 58.66704 * 12 11 10 39 39 H 1.09004 * 109.58675 * 294.84724 * 13 12 11 40 40 H 1.08998 * 109.70633 * 174.49464 * 13 12 11 41 41 H 0.97002 * 120.00137 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.58939 * 293.82114 * 23 14 13 43 43 H 1.09003 * 109.70867 * 173.46452 * 23 14 13 44 44 H 1.09005 * 109.49776 * 301.33134 * 24 11 10 45 45 H 1.08997 * 109.49918 * 61.42807 * 24 11 10 46 46 H 1.08999 * 113.61536 * 334.56916 * 25 6 4 47 47 H 1.09007 * 113.61421 * 105.46695 * 25 6 4 48 48 H 1.08996 * 113.61648 * 270.88101 * 26 25 6 49 49 H 1.09002 * 113.61156 * 139.97807 * 26 25 6 50 50 H 1.09006 * 113.61679 * 254.52900 * 27 6 4 51 51 H 1.09002 * 113.61865 * 25.42952 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.2530 3.8570 1.0244 8 6 3.4409 3.2885 2.4074 9 8 4.1398 2.3109 2.5714 10 7 2.8323 3.8664 3.4620 11 6 3.0154 3.3140 4.8064 12 6 2.0121 2.1809 5.0330 13 6 2.2294 1.5829 6.4266 14 7 2.1556 2.6620 7.4210 15 6 1.3037 2.5696 8.4891 16 1 0.3426 2.0907 8.3733 17 6 1.6752 3.0915 9.7205 18 7 2.9334 3.4011 9.9514 19 14 0.3894 3.3544 11.0498 20 1 -0.9402 2.9296 10.5433 21 1 0.7431 2.5495 12.2466 22 1 0.3436 4.7927 11.4165 23 6 3.0138 3.8420 7.2479 24 6 2.7877 4.4146 5.8451 25 6 4.0354 3.5560 -1.4032 26 6 5.3905 4.1280 -0.9545 27 6 5.4572 2.9685 0.0535 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8932 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.7062 4.8469 0.9739 34 1 2.1881 3.9333 0.8046 35 1 2.2737 4.6484 3.3308 36 1 4.0293 2.9260 4.9046 37 1 0.9977 2.5729 4.9596 38 1 2.1594 1.4081 4.2786 39 1 3.2105 1.1102 6.4725 40 1 1.4569 0.8422 6.6333 41 1 3.1930 3.7661 10.8118 42 1 4.0589 3.5535 7.3608 43 1 2.7597 4.5940 7.9949 44 1 3.4872 5.2318 5.6687 45 1 1.7661 4.7857 5.7640 46 1 4.1158 2.8174 -2.2008 47 1 3.2847 4.3198 -1.6065 48 1 5.3167 5.1097 -0.4866 49 1 6.1605 4.0818 -1.7247 50 1 5.8545 3.2581 1.0264 51 1 5.9264 2.0693 -0.3458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616058728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:15 Heat of formation + Delta-G solvation = -94.070364 kcal Electronic energy + Delta-G solvation = -30922.005891 eV Core-core repulsion = 26822.275913 eV Total energy + Delta-G solvation = -4099.729977 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.30790 -39.61789 -38.59911 -37.18736 -36.40152 -34.38175 -32.26906 -31.92595 -30.73338 -30.01471 -29.17798 -26.30240 -25.88060 -24.76524 -23.37550 -22.32487 -21.98041 -21.57716 -20.32697 -19.41254 -18.88143 -17.77032 -17.05395 -16.82390 -16.71008 -16.35342 -15.72763 -15.34546 -15.00604 -14.70226 -14.23569 -14.17547 -13.84656 -13.62918 -13.56952 -13.11053 -13.01685 -12.95938 -12.77843 -12.63450 -12.42201 -12.33076 -12.06586 -11.86401 -11.69892 -11.43998 -11.43135 -11.17800 -10.88994 -10.85623 -10.75899 -10.65620 -10.60555 -10.46973 -10.27176 -10.17359 -10.07620 -9.88621 -9.69651 -9.41929 -8.69704 -8.48420 -6.58947 -5.81245 -3.30690 2.22728 2.60238 2.76649 3.27290 3.35315 3.43208 3.45592 4.10996 4.19331 4.28274 4.47141 4.47799 4.62505 4.77396 4.83326 4.97313 5.04598 5.11628 5.18551 5.29200 5.33877 5.36215 5.41476 5.47628 5.50923 5.55690 5.59478 5.60196 5.62825 5.77128 5.80549 5.87305 5.94509 6.07160 6.10494 6.27663 6.33259 6.43653 6.51015 6.56528 6.58750 6.81985 6.91675 7.01308 7.25487 7.51612 7.70919 7.79326 7.81056 8.38983 8.48144 9.20279 9.81294 10.43416 11.27194 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002700 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.937013 B =10366.086039 C =11374.311535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.484 3.516 5 O -0.497 6.497 6 C -0.060 4.060 7 C -0.120 4.120 8 C 0.505 3.495 9 O -0.532 6.532 10 N -0.723 5.723 11 C 0.152 3.848 12 C -0.137 4.137 13 C 0.148 3.852 14 N -0.591 5.591 15 C -0.258 4.258 16 H 0.062 0.938 17 C 0.009 3.991 18 N -0.898 5.898 19 Si 0.901 3.099 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.179 3.821 24 C -0.146 4.146 25 C -0.119 4.119 26 C -0.143 4.143 27 C -0.107 4.107 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.395 0.605 36 H 0.081 0.919 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.019 0.981 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.022 0.978 43 H 0.079 0.921 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.082 0.918 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.109 3.429 -24.751 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.326 3.674 5 O -0.383 6.383 6 C -0.062 4.062 7 C -0.160 4.160 8 C 0.290 3.710 9 O -0.408 6.408 10 N -0.373 5.373 11 C 0.048 3.952 12 C -0.177 4.177 13 C 0.021 3.979 14 N -0.313 5.313 15 C -0.388 4.388 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.541 5.541 19 Si 0.730 3.270 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.052 3.948 24 C -0.186 4.186 25 C -0.156 4.156 26 C -0.181 4.181 27 C -0.145 4.145 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.229 0.771 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.041 0.959 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.101 0.899 48 H 0.104 0.896 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.330 2.439 -24.448 24.572 hybrid contribution -0.942 0.334 0.788 1.272 sum -1.271 2.773 -23.660 23.856 Atomic orbital electron populations 1.21795 0.92632 1.02958 1.03458 1.22994 0.95306 0.80397 1.02496 1.86467 1.24782 1.32269 1.84201 1.23187 0.80346 0.92002 0.71818 1.90627 1.60477 1.42603 1.44623 1.21578 0.97704 0.89163 0.97760 1.21519 1.03382 0.99719 0.91401 1.20475 0.79947 0.84182 0.86359 1.90774 1.38533 1.25849 1.85684 1.46320 1.50521 1.32592 1.07896 1.21017 1.00150 0.94615 0.79369 1.22351 0.98626 0.97451 0.99313 1.20885 0.98536 0.91127 0.87365 1.44000 1.46966 1.14946 1.25433 1.19139 0.95540 1.36913 0.87233 0.92005 1.25244 0.95501 1.01396 0.96910 1.70035 1.14547 1.46485 1.23060 0.86255 0.81295 0.77561 0.81839 1.20153 1.21615 1.21511 1.20620 0.93472 0.89976 0.90686 1.22525 1.01016 0.96641 0.98405 1.22969 0.98680 1.00243 0.93749 1.22902 0.97116 0.98605 0.99434 1.22916 0.91554 0.99233 1.00749 0.90298 0.91304 0.91659 0.91147 0.91568 0.87459 0.87691 0.77125 0.90077 0.92415 0.92975 0.96276 0.92600 0.93619 0.95946 0.90281 0.92775 0.92156 0.89369 0.89922 0.89567 0.90558 0.89940 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -4.60 9.99 -39.26 -0.39 -4.99 16 4 C 0.48 6.78 5.63 36.00 0.20 6.99 16 5 O -0.50 -8.51 15.64 -18.75 -0.29 -8.80 16 6 C -0.06 -0.65 0.70 -154.85 -0.11 -0.76 16 7 C -0.12 -1.14 4.93 -27.88 -0.14 -1.28 16 8 C 0.51 7.06 7.30 -10.98 -0.08 6.98 16 9 O -0.53 -9.77 13.81 5.56 0.08 -9.69 16 10 N -0.72 -9.75 5.08 -53.77 -0.27 -10.03 16 11 C 0.15 2.63 2.42 -67.89 -0.16 2.47 16 12 C -0.14 -2.55 5.65 -26.61 -0.15 -2.71 16 13 C 0.15 3.26 6.52 -3.71 -0.02 3.23 16 14 N -0.59 -14.84 2.95 -172.32 -0.51 -15.35 16 15 C -0.26 -7.09 9.50 -15.06 -0.14 -7.23 16 16 H 0.06 1.68 7.87 -52.48 -0.41 1.27 16 17 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 18 N -0.90 -26.04 11.64 55.49 0.65 -25.39 16 19 Si 0.90 21.47 29.58 -169.99 -5.03 16.45 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C 0.18 4.18 5.26 -3.71 -0.02 4.16 16 24 C -0.15 -2.62 5.55 -26.61 -0.15 -2.76 16 25 C -0.12 -0.88 7.22 -25.92 -0.19 -1.07 16 26 C -0.14 -1.02 7.73 -25.92 -0.20 -1.22 16 27 C -0.11 -1.16 6.41 -25.92 -0.17 -1.33 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.89 8.13 -51.93 -0.42 0.46 16 32 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 33 H 0.11 0.72 7.30 -51.93 -0.38 0.34 16 34 H 0.10 0.83 8.11 -51.92 -0.42 0.41 16 35 H 0.40 4.12 8.60 -40.82 -0.35 3.76 16 36 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 2.03 6.58 -51.93 -0.34 1.69 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 47 H 0.08 0.45 8.10 -51.92 -0.42 0.03 16 48 H 0.09 0.50 7.60 -51.93 -0.39 0.11 16 49 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.08 1.01 7.37 -51.93 -0.38 0.63 16 51 H 0.10 1.16 7.41 -51.93 -0.38 0.78 16 LS Contribution 404.76 15.07 6.10 6.10 Total: -1.00 -34.14 404.76 -9.39 -43.54 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.92 Total: 2.46 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.80 Total: 5.70 kcal Atomic # 7 Polarization: -50.63 SS G_CDS: -0.14 Total: -50.77 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.61 Total: -23.48 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.14 -9.39 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616058728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.531 kcal (2) G-P(sol) polarization free energy of solvation -34.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds