Wall clock time and date at job start Tue Mar 31 2020 22:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47110 * 2 1 4 4 C 1.34231 * 116.99978 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99747 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99950 * 179.97438 * 4 3 2 7 7 C 1.52997 * 112.85376 * 46.65341 * 6 4 3 8 8 C 1.50705 * 109.46971 * 60.27931 * 7 6 4 9 9 O 1.21283 * 119.99775 * 6.00725 * 8 7 6 10 10 N 1.34778 * 120.00158 * 186.00710 * 8 7 6 11 11 C 1.46497 * 119.99868 * 180.02562 * 10 8 7 12 12 C 1.53040 * 109.45653 * 275.06590 * 11 10 8 13 13 C 1.53193 * 109.31017 * 178.61892 * 12 11 10 14 14 N 1.46923 * 108.77916 * 54.63568 * 13 12 11 15 15 C 1.36937 * 120.63679 * 126.41687 * 14 13 12 16 16 H 1.08004 * 119.99532 * 324.72251 * 15 14 13 17 17 C 1.38807 * 120.00711 * 144.72218 * 15 14 13 18 18 N 1.31618 * 119.99611 * 344.81384 * 17 15 14 19 19 Si 1.86798 * 120.00165 * 164.80798 * 17 15 14 20 20 H 1.48493 * 109.47052 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46728 * 120.00049 * 19 17 15 22 22 H 1.48495 * 109.47166 * 239.99927 * 19 17 15 23 23 C 1.46928 * 118.73727 * 306.39122 * 14 13 12 24 24 C 1.53044 * 109.45762 * 155.00159 * 11 10 8 25 25 C 1.53782 * 113.61393 * 275.34797 * 6 4 3 26 26 C 1.53780 * 87.08328 * 220.01920 * 25 6 4 27 27 C 1.53775 * 113.61560 * 177.85449 * 6 4 3 28 28 H 1.08998 * 109.47222 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47604 * 300.00517 * 1 2 3 30 30 H 1.09001 * 109.47115 * 60.00176 * 1 2 3 31 31 H 1.09002 * 109.46868 * 119.99334 * 2 1 3 32 32 H 1.08997 * 109.47604 * 239.99483 * 2 1 3 33 33 H 1.08994 * 109.47601 * 180.28201 * 7 6 4 34 34 H 1.09008 * 109.47301 * 300.28397 * 7 6 4 35 35 H 0.97002 * 119.99701 * 359.97438 * 10 8 7 36 36 H 1.08994 * 109.46189 * 35.02243 * 11 10 8 37 37 H 1.09002 * 109.50241 * 298.56356 * 12 11 10 38 38 H 1.08996 * 109.50229 * 58.66704 * 12 11 10 39 39 H 1.09004 * 109.58675 * 294.84724 * 13 12 11 40 40 H 1.08998 * 109.70633 * 174.49464 * 13 12 11 41 41 H 0.97002 * 120.00137 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.58939 * 293.82114 * 23 14 13 43 43 H 1.09003 * 109.70867 * 173.46452 * 23 14 13 44 44 H 1.09005 * 109.49776 * 301.33134 * 24 11 10 45 45 H 1.08997 * 109.49918 * 61.42807 * 24 11 10 46 46 H 1.08999 * 113.61536 * 334.56916 * 25 6 4 47 47 H 1.09007 * 113.61421 * 105.46695 * 25 6 4 48 48 H 1.08996 * 113.61648 * 270.88101 * 26 25 6 49 49 H 1.09002 * 113.61156 * 139.97807 * 26 25 6 50 50 H 1.09006 * 113.61679 * 254.52900 * 27 6 4 51 51 H 1.09002 * 113.61865 * 25.42952 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.2530 3.8570 1.0244 8 6 3.4409 3.2885 2.4074 9 8 4.1398 2.3109 2.5714 10 7 2.8323 3.8664 3.4620 11 6 3.0154 3.3140 4.8064 12 6 2.0121 2.1809 5.0330 13 6 2.2294 1.5829 6.4266 14 7 2.1556 2.6620 7.4210 15 6 1.3037 2.5696 8.4891 16 1 0.3426 2.0907 8.3733 17 6 1.6752 3.0915 9.7205 18 7 2.9334 3.4011 9.9514 19 14 0.3894 3.3544 11.0498 20 1 -0.9402 2.9296 10.5433 21 1 0.7431 2.5495 12.2466 22 1 0.3436 4.7927 11.4165 23 6 3.0138 3.8420 7.2479 24 6 2.7877 4.4146 5.8451 25 6 4.0354 3.5560 -1.4032 26 6 5.3905 4.1280 -0.9545 27 6 5.4572 2.9685 0.0535 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8932 -0.5137 0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 3.7062 4.8469 0.9739 34 1 2.1881 3.9333 0.8046 35 1 2.2737 4.6484 3.3308 36 1 4.0293 2.9260 4.9046 37 1 0.9977 2.5729 4.9596 38 1 2.1594 1.4081 4.2786 39 1 3.2105 1.1102 6.4725 40 1 1.4569 0.8422 6.6333 41 1 3.1930 3.7661 10.8118 42 1 4.0589 3.5535 7.3608 43 1 2.7597 4.5940 7.9949 44 1 3.4872 5.2318 5.6687 45 1 1.7661 4.7857 5.7640 46 1 4.1158 2.8174 -2.2008 47 1 3.2847 4.3198 -1.6065 48 1 5.3167 5.1097 -0.4866 49 1 6.1605 4.0818 -1.7247 50 1 5.8545 3.2581 1.0264 51 1 5.9264 2.0693 -0.3458 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616058728.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:14 Heat of formation + Delta-G solvation = -115.459337 kcal Electronic energy + Delta-G solvation = -30922.933386 eV Core-core repulsion = 26822.275913 eV Total energy + Delta-G solvation = -4100.657473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.25025 -40.80828 -39.60362 -38.69412 -37.47296 -35.96777 -33.99408 -32.77027 -32.06361 -31.61409 -30.59176 -27.39525 -26.69480 -26.35803 -24.22266 -23.97925 -23.61868 -22.46867 -21.52189 -21.05034 -19.75169 -19.02567 -18.50204 -17.96754 -17.77716 -17.43059 -17.08945 -16.70458 -16.23152 -15.89536 -15.56459 -15.40175 -15.11495 -15.10291 -14.87876 -14.70662 -14.30575 -14.16351 -13.77708 -13.69508 -13.37587 -13.28602 -13.21479 -13.05084 -12.91537 -12.68266 -12.66059 -12.54788 -12.49154 -12.26153 -12.21988 -12.01835 -11.93994 -11.60877 -11.57674 -11.51680 -11.39125 -11.31462 -11.12471 -10.74370 -10.60348 -9.99282 -8.64496 -7.90814 -5.44990 1.20355 1.46192 1.47926 1.59203 1.67542 1.71278 2.18681 2.49349 3.25095 3.32087 3.44313 3.51998 3.62835 3.76979 3.83763 3.88995 3.93986 4.01422 4.04837 4.16870 4.28645 4.30428 4.42661 4.45657 4.54176 4.60838 4.64127 4.76749 4.80248 4.82103 4.83368 4.87423 4.89560 5.00491 5.01649 5.07329 5.11055 5.13217 5.14389 5.15785 5.25603 5.38955 5.45273 5.47684 5.56875 5.63179 5.65051 6.39585 6.63784 6.76362 7.12761 7.33966 7.78648 8.36932 9.15709 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.002700 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.937013 B =10366.086039 C =11374.311535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.477 3.523 5 O -0.543 6.543 6 C -0.071 4.071 7 C -0.109 4.109 8 C 0.500 3.500 9 O -0.582 6.582 10 N -0.709 5.709 11 C 0.164 3.836 12 C -0.120 4.120 13 C 0.145 3.855 14 N -0.606 5.606 15 C -0.271 4.271 16 H 0.063 0.937 17 C -0.042 4.042 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.293 1.293 22 H -0.285 1.285 23 C 0.183 3.817 24 C -0.126 4.126 25 C -0.104 4.104 26 C -0.125 4.125 27 C -0.122 4.122 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.149 0.851 34 H 0.133 0.867 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.048 0.952 39 H -0.001 1.001 40 H 0.055 0.945 41 H 0.252 0.748 42 H -0.008 1.008 43 H 0.053 0.947 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.116 0.884 48 H 0.110 0.890 49 H 0.086 0.914 50 H 0.061 0.939 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.334 6.114 -27.106 27.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.321 3.679 5 O -0.432 6.432 6 C -0.072 4.072 7 C -0.148 4.148 8 C 0.287 3.713 9 O -0.462 6.462 10 N -0.361 5.361 11 C 0.058 3.942 12 C -0.160 4.160 13 C 0.019 3.981 14 N -0.330 5.330 15 C -0.401 4.401 16 H 0.081 0.919 17 C -0.239 4.239 18 N -0.577 5.577 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.220 1.220 22 H -0.211 1.211 23 C 0.057 3.943 24 C -0.166 4.166 25 C -0.141 4.141 26 C -0.162 4.162 27 C -0.159 4.159 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.254 0.746 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.017 0.983 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.010 0.990 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.105 0.895 50 H 0.080 0.920 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.598 5.163 -26.848 27.463 hybrid contribution -0.185 -0.638 1.534 1.672 sum -2.784 4.525 -25.314 25.865 Atomic orbital electron populations 1.21792 0.89972 1.04294 1.03873 1.23182 0.97365 0.79862 1.01572 1.86472 1.24287 1.32941 1.83780 1.24065 0.80363 0.93108 0.70354 1.90601 1.61417 1.44371 1.46823 1.21898 0.97035 0.87695 1.00605 1.21608 1.05371 1.00607 0.87233 1.21363 0.78589 0.83341 0.87968 1.90779 1.40623 1.28237 1.86537 1.46011 1.50838 1.33123 1.06119 1.20559 0.98009 0.94022 0.81569 1.22119 0.99604 0.97748 0.96537 1.20940 0.97391 0.90825 0.88934 1.44259 1.46861 1.16249 1.25652 1.19456 0.95904 1.36622 0.88124 0.91938 1.26033 0.97327 1.01458 0.99051 1.70189 1.16458 1.47581 1.23490 0.85184 0.79195 0.77267 0.78620 1.18892 1.22032 1.21128 1.20462 0.91427 0.88955 0.93450 1.22236 1.02578 0.97005 0.94752 1.22976 0.99614 1.00423 0.91131 1.22905 0.97238 0.97874 0.98170 1.22925 0.91940 1.00205 1.00855 0.88573 0.91879 0.90091 0.93633 0.91089 0.83346 0.84929 0.74634 0.93120 0.91195 0.93302 0.98334 0.92694 0.93910 0.98965 0.92891 0.90128 0.90674 0.89807 0.86559 0.87121 0.89486 0.92038 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 10.29 71.98 0.74 -1.38 16 2 C 0.05 1.20 6.19 71.98 0.45 1.65 16 3 O -0.36 -8.83 9.99 -51.42 -0.51 -9.35 16 4 C 0.48 13.32 5.63 71.23 0.40 13.72 16 5 O -0.54 -19.59 15.64 21.97 0.34 -19.24 16 6 C -0.07 -1.38 0.70 -52.41 -0.04 -1.42 16 7 C -0.11 -1.66 4.93 29.85 0.15 -1.52 16 8 C 0.50 13.12 7.30 87.66 0.64 13.76 16 9 O -0.58 -21.77 13.81 -3.04 -0.04 -21.81 16 10 N -0.71 -17.36 5.08 -442.40 -2.25 -19.61 16 11 C 0.16 5.56 2.42 45.02 0.11 5.67 16 12 C -0.12 -4.44 5.65 30.67 0.17 -4.26 16 13 C 0.15 6.60 6.52 86.36 0.56 7.16 16 14 N -0.61 -31.15 2.95 -699.09 -2.06 -33.21 16 15 C -0.27 -15.02 9.50 84.03 0.80 -14.23 16 16 H 0.06 3.40 7.87 -2.91 -0.02 3.37 16 17 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 18 N -0.93 -55.49 11.64 21.65 0.25 -55.24 16 19 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 23 C 0.18 8.75 5.26 86.36 0.45 9.20 16 24 C -0.13 -4.36 5.55 30.67 0.17 -4.19 16 25 C -0.10 -1.16 7.22 31.12 0.22 -0.94 16 26 C -0.12 -1.35 7.73 31.12 0.24 -1.11 16 27 C -0.12 -2.59 6.41 31.12 0.20 -2.39 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 32 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 33 H 0.15 1.12 7.30 -2.39 -0.02 1.10 16 34 H 0.13 1.39 8.11 -2.38 -0.02 1.37 16 35 H 0.42 6.88 8.60 -92.71 -0.80 6.08 16 36 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 40 H 0.05 2.44 7.93 -2.39 -0.02 2.42 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 43 H 0.05 2.78 6.58 -2.39 -0.02 2.77 16 44 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 47 H 0.12 0.58 8.10 -2.38 -0.02 0.56 16 48 H 0.11 0.71 7.60 -2.39 -0.02 0.69 16 49 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 1.53 7.37 -2.38 -0.02 1.52 16 51 H 0.07 1.82 7.41 -2.39 -0.02 1.80 16 Total: -1.00 -80.17 404.76 3.56 -76.61 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.11 Total: 17.60 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 5.69 Total: 17.80 kcal Atomic # 7 Polarization: -104.00 SS G_CDS: -4.06 Total: -108.06 kcal Atomic # 8 Polarization: -50.19 SS G_CDS: -0.21 Total: -50.41 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -80.17 3.56 -76.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616058728.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.854 kcal (2) G-P(sol) polarization free energy of solvation -80.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds