Wall clock time and date at job start Tue Mar 31 2020 20:46:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46499 * 109.47276 * 2 1
4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1
5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2
6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3
7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3
8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47226 * 89.99205 * 9 7 5
11 11 H 1.48494 * 109.47051 * 209.99874 * 9 7 5
12 12 H 1.48508 * 109.46947 * 329.99558 * 9 7 5
13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1
14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2
15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2
16 16 H 1.08997 * 115.52115 * 34.57913 * 15 13 3
17 17 C 1.53006 * 117.44076 * 179.97438 * 15 13 3
18 18 H 1.09007 * 119.53640 * 355.87983 * 17 15 13
19 19 C 1.54381 * 118.12331 * 200.78484 * 17 15 13
20 20 N 1.51830 * 102.86883 * 271.97891 * 19 17 15
21 21 C 1.34775 * 127.61424 * 219.45595 * 20 19 17
22 22 O 1.21515 * 120.00146 * 180.33366 * 21 20 19
23 23 O 1.34634 * 120.00034 * 0.33468 * 21 20 19
24 24 C 1.45195 * 117.00245 * 179.97438 * 23 21 20
25 25 C 1.52999 * 109.46954 * 60.00180 * 24 23 21
26 26 C 1.53003 * 109.47343 * 180.02562 * 24 23 21
27 27 C 1.52999 * 109.47076 * 300.00364 * 24 23 21
28 28 C 1.48147 * 104.54736 * 39.72912 * 20 19 17
29 29 C 1.53003 * 117.43873 * 249.23535 * 15 13 3
30 30 H 1.08999 * 119.54295 * 4.12358 * 29 15 13
31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47074 * 300.00425 * 1 2 3
33 33 H 1.09007 * 109.46853 * 59.99785 * 1 2 3
34 34 H 1.08998 * 109.47074 * 239.99575 * 2 1 3
35 35 H 1.09008 * 109.46412 * 119.99581 * 2 1 3
36 36 H 1.08997 * 109.46865 * 30.00228 * 4 3 2
37 37 H 1.08998 * 109.47058 * 149.99741 * 4 3 2
38 38 H 0.96995 * 120.00744 * 180.02562 * 8 7 5
39 39 H 1.08995 * 110.40836 * 31.59228 * 19 17 15
40 40 H 1.09000 * 110.40919 * 154.02731 * 19 17 15
41 41 H 1.08998 * 109.47433 * 60.00179 * 25 24 23
42 42 H 1.09002 * 109.47363 * 179.97438 * 25 24 23
43 43 H 1.09005 * 109.47442 * 300.00039 * 25 24 23
44 44 H 1.08997 * 109.46922 * 60.00489 * 26 24 23
45 45 H 1.09002 * 109.47266 * 180.02562 * 26 24 23
46 46 H 1.08997 * 109.46720 * 300.00531 * 26 24 23
47 47 H 1.08998 * 109.47410 * 60.00258 * 27 24 23
48 48 H 1.09002 * 109.46743 * 179.97438 * 27 24 23
49 49 H 1.08997 * 109.47395 * 299.99637 * 27 24 23
50 50 H 1.09007 * 110.40989 * 201.35892 * 28 20 19
51 51 H 1.09001 * 110.50532 * 78.97592 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2627 2.0718 -1.2687
5 6 3.6859 1.8349 -1.7037
6 1 4.3429 1.2307 -1.0957
7 6 4.1496 2.3903 -2.8773
8 7 3.3497 3.1265 -3.6175
9 14 5.9140 2.0972 -3.4162
10 1 5.9778 0.8765 -4.2593
11 1 6.3930 3.2649 -4.1986
12 1 6.7739 1.9173 -2.2188
13 6 2.2429 2.0166 1.1673
14 8 2.6477 3.1599 1.1672
15 6 1.9858 1.3082 2.4723
16 1 2.1957 0.2387 2.4754
17 6 2.2611 2.0842 3.7619
18 1 2.6922 3.0839 3.7060
19 6 2.4832 1.2808 5.0614
20 7 1.0736 1.1118 5.5996
21 6 0.6695 1.1805 6.8835
22 8 -0.5020 1.0163 7.1614
23 8 1.5639 1.4311 7.8582
24 6 1.0577 1.4915 9.2177
25 6 0.4162 0.1513 9.5830
26 6 2.2115 1.7841 10.1790
27 6 0.0119 2.6032 9.3236
28 6 0.2461 0.8485 4.3993
29 6 0.8103 1.7977 3.3205
30 1 0.1605 2.5838 2.9358
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5139 -0.8900
34 1 1.8933 -0.5139 -0.8899
35 1 1.8932 -0.5138 0.8901
36 1 1.5819 1.6877 -2.0283
37 1 2.0957 3.1410 -1.1384
38 1 3.6757 3.5169 -4.4434
39 1 2.9524 0.3222 4.8400
40 1 3.0937 1.8512 5.7613
41 1 1.1612 -0.6407 9.5076
42 1 0.0366 0.1964 10.6038
43 1 -0.4059 -0.0567 8.8981
44 1 2.6680 2.7390 9.9186
45 1 1.8316 1.8289 11.1997
46 1 2.9568 0.9924 10.1035
47 1 -0.8102 2.3951 8.6388
48 1 -0.3684 2.6482 10.3441
49 1 0.4688 3.5579 9.0634
50 1 -0.7999 1.0807 4.6002
51 1 0.3503 -0.1897 4.0839
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000814110665.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:46:55
Heat of formation + Delta-G solvation = -74.731645 kcal
Electronic energy + Delta-G solvation = -30109.869857 eV
Core-core repulsion = 26010.978469 eV
Total energy + Delta-G solvation = -4098.891387 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.04821 -40.11282 -38.35037 -36.88072 -35.33383 -34.44474 -33.33438 -32.71395
-30.10426 -28.81000 -27.84477 -27.69929 -27.65663 -26.37611 -23.74752 -22.98859
-22.17748 -21.23269 -20.26939 -19.61818 -18.47301 -18.01758 -16.89095 -16.73711
-16.47823 -16.36640 -15.66740 -15.26462 -14.93460 -14.53257 -14.39057 -14.32804
-13.96953 -13.63489 -13.59995 -13.28007 -12.85973 -12.80307 -12.59863 -12.56801
-12.43938 -12.26698 -12.18410 -12.08800 -12.01138 -11.72249 -11.71135 -11.58098
-11.52997 -11.23160 -10.93230 -10.78315 -10.61970 -10.60207 -10.35277 -10.21767
-10.13190 -9.96915 -9.65664 -9.11620 -8.96628 -8.45337 -7.70533 -6.06156
-4.11003 1.80669 2.65729 2.89892 3.28823 3.35744 3.39845 3.48798
3.70941 3.84369 4.39640 4.42206 4.46335 4.49560 4.57340 4.60651
4.68135 4.83471 5.05100 5.14345 5.14536 5.16538 5.23849 5.26597
5.28710 5.38618 5.41167 5.43746 5.48850 5.55481 5.56410 5.57609
5.66009 5.67534 5.80559 5.81894 5.98185 5.99914 6.04422 6.05699
6.13760 6.23739 6.25249 6.50258 7.03707 7.26755 7.41323 7.51099
7.90090 8.14025 8.20918 8.37745 8.87101 9.04420 9.54161 11.01907
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.022761 B = 0.002200 C = 0.002097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.896045 B =12725.075091 C =13346.263757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.107 3.893
3 N -0.590 5.590
4 C 0.246 3.754
5 C -0.526 4.526
6 H 0.057 0.943
7 C 0.060 3.940
8 N -0.895 5.895
9 Si 0.898 3.102
10 H -0.280 1.280
11 H -0.285 1.285
12 H -0.274 1.274
13 C 0.535 3.465
14 O -0.538 6.538
15 C -0.138 4.138
16 H 0.122 0.878
17 C -0.147 4.147
18 H 0.135 0.865
19 C 0.135 3.865
20 N -0.615 5.615
21 C 0.675 3.325
22 O -0.571 6.571
23 O -0.361 6.361
24 C 0.136 3.864
25 C -0.183 4.183
26 C -0.141 4.141
27 C -0.184 4.184
28 C 0.156 3.844
29 C -0.151 4.151
30 H 0.129 0.871
31 H 0.059 0.941
32 H 0.054 0.946
33 H 0.059 0.941
34 H 0.081 0.919
35 H 0.065 0.935
36 H 0.033 0.967
37 H 0.043 0.957
38 H 0.263 0.737
39 H 0.086 0.914
40 H 0.094 0.906
41 H 0.059 0.941
42 H 0.069 0.931
43 H 0.087 0.913
44 H 0.067 0.933
45 H 0.080 0.920
46 H 0.066 0.934
47 H 0.087 0.913
48 H 0.069 0.931
49 H 0.060 0.940
50 H 0.094 0.906
51 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.200 -7.754 23.940 25.917
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.017 4.017
3 N -0.321 5.321
4 C 0.127 3.873
5 C -0.565 4.565
6 H 0.076 0.924
7 C -0.142 4.142
8 N -0.534 5.534
9 Si 0.726 3.274
10 H -0.206 1.206
11 H -0.211 1.211
12 H -0.199 1.199
13 C 0.320 3.680
14 O -0.416 6.416
15 C -0.159 4.159
16 H 0.140 0.860
17 C -0.167 4.167
18 H 0.153 0.847
19 C 0.014 3.986
20 N -0.357 5.357
21 C 0.431 3.569
22 O -0.461 6.461
23 O -0.276 6.276
24 C 0.099 3.901
25 C -0.240 4.240
26 C -0.198 4.198
27 C -0.241 4.241
28 C 0.035 3.965
29 C -0.171 4.171
30 H 0.147 0.853
31 H 0.078 0.922
32 H 0.073 0.927
33 H 0.078 0.922
34 H 0.100 0.900
35 H 0.083 0.917
36 H 0.051 0.949
37 H 0.061 0.939
38 H 0.073 0.927
39 H 0.104 0.896
40 H 0.112 0.888
41 H 0.078 0.922
42 H 0.088 0.912
43 H 0.106 0.894
44 H 0.086 0.914
45 H 0.098 0.902
46 H 0.085 0.915
47 H 0.106 0.894
48 H 0.088 0.912
49 H 0.079 0.921
50 H 0.112 0.888
51 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -6.390 -7.070 24.046 25.865
hybrid contribution 0.971 -0.181 -0.493 1.104
sum -5.419 -7.251 23.553 25.232
Atomic orbital electron populations
1.22209 0.96623 1.01406 1.02456 1.21441 0.93663 0.84051 1.02564
1.48182 1.63074 1.13358 1.07449 1.19294 0.96350 0.93621 0.78003
1.21423 0.96872 1.31915 1.06278 0.92437 1.24942 0.97888 0.94908
0.96423 1.69929 1.35717 1.33391 1.14321 0.86493 0.84648 0.77672
0.78593 1.20644 1.21101 1.19884 1.19169 0.78634 0.86260 0.83911
1.90682 1.45994 1.17947 1.86961 1.22503 1.01897 1.00341 0.91183
0.86040 1.23582 0.99159 1.02085 0.91854 0.84702 1.22582 0.82360
1.00196 0.93469 1.48857 1.10664 1.73379 1.02755 1.17365 0.82914
0.76139 0.80472 1.90899 1.17069 1.56420 1.81721 1.86310 1.40086
1.84424 1.16773 1.22076 0.94686 0.96493 0.76864 1.22514 1.02568
0.95783 1.03140 1.21858 0.97290 1.03051 0.97570 1.22518 1.00164
0.97707 1.03689 1.21684 0.95634 0.98210 0.80949 1.23611 0.91300
1.02608 0.99575 0.85348 0.92249 0.92726 0.92179 0.90044 0.91671
0.94894 0.93900 0.92704 0.89629 0.88769 0.92202 0.91180 0.89388
0.91393 0.90156 0.91461 0.89387 0.91186 0.92105 0.88796 0.90115
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16
2 C 0.11 1.62 5.95 -4.04 -0.02 1.59 16
3 N -0.59 -11.94 2.46 -175.06 -0.43 -12.37 16
4 C 0.25 6.29 5.16 -5.20 -0.03 6.26 16
5 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16
6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16
7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16
8 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16
9 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16
10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16
13 C 0.53 10.56 7.45 -10.98 -0.08 10.48 16
14 O -0.54 -13.11 15.91 5.56 0.09 -13.02 16
15 C -0.14 -1.89 4.83 -91.77 -0.44 -2.33 16
16 H 0.12 1.38 6.44 -51.93 -0.33 1.05 16
17 C -0.15 -1.85 6.49 -89.19 -0.58 -2.43 16
18 H 0.14 1.93 7.80 -51.92 -0.40 1.52 16
19 C 0.13 1.37 7.13 -0.29 0.00 1.37 16
20 N -0.61 -7.05 3.39 -171.92 -0.58 -7.64 16
21 C 0.68 8.63 8.03 54.05 0.43 9.06 16
22 O -0.57 -8.24 12.15 -19.28 -0.23 -8.47 16
23 O -0.36 -4.16 9.48 -40.31 -0.38 -4.54 16
24 C 0.14 1.25 1.13 -90.62 -0.10 1.14 16
25 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16
26 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16
27 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16
28 C 0.16 1.62 6.86 -2.42 -0.02 1.60 16
29 C -0.15 -1.80 6.84 -89.20 -0.61 -2.41 16
30 H 0.13 1.64 8.14 -51.93 -0.42 1.21 16
31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
33 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16
34 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16
35 H 0.07 0.80 6.00 -51.92 -0.31 0.49 16
36 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16
37 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16
38 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
39 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16
41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16
43 H 0.09 0.97 5.88 -51.93 -0.31 0.66 16
44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16
46 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16
47 H 0.09 1.01 5.88 -51.93 -0.31 0.71 16
48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
49 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
50 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16
51 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
LS Contribution 411.43 15.07 6.20 6.20
Total: -1.00 -33.87 411.43 -8.91 -42.79
By element:
Atomic # 1 Polarization: 8.80 SS G_CDS: -8.75 Total: 0.05 kcal
Atomic # 6 Polarization: 6.52 SS G_CDS: -0.54 Total: 5.98 kcal
Atomic # 7 Polarization: -45.33 SS G_CDS: -0.28 Total: -45.61 kcal
Atomic # 8 Polarization: -25.50 SS G_CDS: -0.53 Total: -26.03 kcal
Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal
Total LS contribution 6.20 Total: 6.20 kcal
Total: -33.87 -8.91 -42.79 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000814110665.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.944 kcal
(2) G-P(sol) polarization free energy of solvation -33.874 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.818 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.732 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds