Wall clock time and date at job start Tue Mar 31 2020 20:46:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46499 * 109.47276 * 2 1
4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1
5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2
6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3
7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3
8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4
9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4
10 10 H 1.48497 * 109.47226 * 89.99205 * 9 7 5
11 11 H 1.48494 * 109.47051 * 209.99874 * 9 7 5
12 12 H 1.48508 * 109.46947 * 329.99558 * 9 7 5
13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1
14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2
15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2
16 16 H 1.08997 * 115.52115 * 34.57913 * 15 13 3
17 17 C 1.53006 * 117.44076 * 179.97438 * 15 13 3
18 18 H 1.09007 * 119.53640 * 355.87983 * 17 15 13
19 19 C 1.54381 * 118.12331 * 200.78484 * 17 15 13
20 20 N 1.51830 * 102.86883 * 271.97891 * 19 17 15
21 21 C 1.34775 * 127.61424 * 219.45595 * 20 19 17
22 22 O 1.21515 * 120.00146 * 180.33366 * 21 20 19
23 23 O 1.34634 * 120.00034 * 0.33468 * 21 20 19
24 24 C 1.45195 * 117.00245 * 179.97438 * 23 21 20
25 25 C 1.52999 * 109.46954 * 60.00180 * 24 23 21
26 26 C 1.53003 * 109.47343 * 180.02562 * 24 23 21
27 27 C 1.52999 * 109.47076 * 300.00364 * 24 23 21
28 28 C 1.48147 * 104.54736 * 39.72912 * 20 19 17
29 29 C 1.53003 * 117.43873 * 249.23535 * 15 13 3
30 30 H 1.08999 * 119.54295 * 4.12358 * 29 15 13
31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47074 * 300.00425 * 1 2 3
33 33 H 1.09007 * 109.46853 * 59.99785 * 1 2 3
34 34 H 1.08998 * 109.47074 * 239.99575 * 2 1 3
35 35 H 1.09008 * 109.46412 * 119.99581 * 2 1 3
36 36 H 1.08997 * 109.46865 * 30.00228 * 4 3 2
37 37 H 1.08998 * 109.47058 * 149.99741 * 4 3 2
38 38 H 0.96995 * 120.00744 * 180.02562 * 8 7 5
39 39 H 1.08995 * 110.40836 * 31.59228 * 19 17 15
40 40 H 1.09000 * 110.40919 * 154.02731 * 19 17 15
41 41 H 1.08998 * 109.47433 * 60.00179 * 25 24 23
42 42 H 1.09002 * 109.47363 * 179.97438 * 25 24 23
43 43 H 1.09005 * 109.47442 * 300.00039 * 25 24 23
44 44 H 1.08997 * 109.46922 * 60.00489 * 26 24 23
45 45 H 1.09002 * 109.47266 * 180.02562 * 26 24 23
46 46 H 1.08997 * 109.46720 * 300.00531 * 26 24 23
47 47 H 1.08998 * 109.47410 * 60.00258 * 27 24 23
48 48 H 1.09002 * 109.46743 * 179.97438 * 27 24 23
49 49 H 1.08997 * 109.47395 * 299.99637 * 27 24 23
50 50 H 1.09007 * 110.40989 * 201.35892 * 28 20 19
51 51 H 1.09001 * 110.50532 * 78.97592 * 28 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.2627 2.0718 -1.2687
5 6 3.6859 1.8349 -1.7037
6 1 4.3429 1.2307 -1.0957
7 6 4.1496 2.3903 -2.8773
8 7 3.3497 3.1265 -3.6175
9 14 5.9140 2.0972 -3.4162
10 1 5.9778 0.8765 -4.2593
11 1 6.3930 3.2649 -4.1986
12 1 6.7739 1.9173 -2.2188
13 6 2.2429 2.0166 1.1673
14 8 2.6477 3.1599 1.1672
15 6 1.9858 1.3082 2.4723
16 1 2.1957 0.2387 2.4754
17 6 2.2611 2.0842 3.7619
18 1 2.6922 3.0839 3.7060
19 6 2.4832 1.2808 5.0614
20 7 1.0736 1.1118 5.5996
21 6 0.6695 1.1805 6.8835
22 8 -0.5020 1.0163 7.1614
23 8 1.5639 1.4311 7.8582
24 6 1.0577 1.4915 9.2177
25 6 0.4162 0.1513 9.5830
26 6 2.2115 1.7841 10.1790
27 6 0.0119 2.6032 9.3236
28 6 0.2461 0.8485 4.3993
29 6 0.8103 1.7977 3.3205
30 1 0.1605 2.5838 2.9358
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8899
33 1 -0.3633 0.5139 -0.8900
34 1 1.8933 -0.5139 -0.8899
35 1 1.8932 -0.5138 0.8901
36 1 1.5819 1.6877 -2.0283
37 1 2.0957 3.1410 -1.1384
38 1 3.6757 3.5169 -4.4434
39 1 2.9524 0.3222 4.8400
40 1 3.0937 1.8512 5.7613
41 1 1.1612 -0.6407 9.5076
42 1 0.0366 0.1964 10.6038
43 1 -0.4059 -0.0567 8.8981
44 1 2.6680 2.7390 9.9186
45 1 1.8316 1.8289 11.1997
46 1 2.9568 0.9924 10.1035
47 1 -0.8102 2.3951 8.6388
48 1 -0.3684 2.6482 10.3441
49 1 0.4688 3.5579 9.0634
50 1 -0.7999 1.0807 4.6002
51 1 0.3503 -0.1897 4.0839
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000814110665.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:46:54
Heat of formation + Delta-G solvation = -95.198827 kcal
Electronic energy + Delta-G solvation = -30110.757380 eV
Core-core repulsion = 26010.978469 eV
Total energy + Delta-G solvation = -4099.778911 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.204 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-41.98574 -41.25834 -39.64770 -37.80707 -36.94930 -35.30017 -34.89055 -34.14773
-31.58006 -29.66495 -29.50809 -28.33857 -28.26655 -27.66743 -25.41473 -24.29459
-23.29154 -22.36184 -21.22854 -20.43367 -19.84668 -18.93554 -18.64924 -18.13888
-17.56831 -17.46574 -17.16528 -16.39475 -16.13038 -15.99730 -15.48737 -15.23603
-14.98744 -14.90222 -14.60028 -14.39343 -14.25836 -13.83196 -13.72401 -13.55581
-13.37448 -13.28231 -13.22741 -13.08620 -13.07212 -12.85269 -12.83050 -12.65273
-12.59657 -12.46621 -12.45506 -12.29184 -12.16060 -11.89420 -11.71560 -11.37680
-11.30582 -11.25182 -10.95184 -10.63814 -10.62420 -9.95330 -9.44030 -8.22091
-6.36938 0.98058 1.36891 1.40030 1.49687 1.55858 1.73238 2.23001
2.39456 2.55523 2.82525 3.07420 3.35138 3.55411 3.66635 3.77710
3.82574 3.89304 3.94476 3.97303 4.05696 4.28707 4.35673 4.48215
4.51431 4.60331 4.63713 4.64545 4.72677 4.76238 4.79043 4.80238
4.86498 4.90296 4.97409 4.98991 5.00160 5.03831 5.09098 5.12360
5.16413 5.23244 5.30449 5.35565 5.44911 5.46544 5.58624 5.86104
6.06365 6.37409 6.70418 6.80159 7.23506 7.28241 7.47241 8.84971
Molecular weight = 338.20amu
Principal moments of inertia in cm(-1)
A = 0.022761 B = 0.002200 C = 0.002097
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1229.896045 B =12725.075091 C =13346.263757
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.100 3.900
3 N -0.596 5.596
4 C 0.262 3.738
5 C -0.540 4.540
6 H 0.055 0.945
7 C 0.005 3.995
8 N -0.930 5.930
9 Si 0.969 3.031
10 H -0.263 1.263
11 H -0.283 1.283
12 H -0.271 1.271
13 C 0.525 3.475
14 O -0.598 6.598
15 C -0.131 4.131
16 H 0.159 0.841
17 C -0.150 4.150
18 H 0.110 0.890
19 C 0.145 3.855
20 N -0.618 5.618
21 C 0.670 3.330
22 O -0.593 6.593
23 O -0.367 6.367
24 C 0.124 3.876
25 C -0.178 4.178
26 C -0.136 4.136
27 C -0.180 4.180
28 C 0.162 3.838
29 C -0.137 4.137
30 H 0.114 0.886
31 H 0.095 0.905
32 H 0.063 0.937
33 H 0.034 0.966
34 H 0.070 0.930
35 H 0.105 0.895
36 H 0.022 0.978
37 H -0.006 1.006
38 H 0.267 0.733
39 H 0.113 0.887
40 H 0.100 0.900
41 H 0.063 0.937
42 H 0.090 0.910
43 H 0.062 0.938
44 H 0.066 0.934
45 H 0.102 0.898
46 H 0.071 0.929
47 H 0.061 0.939
48 H 0.092 0.908
49 H 0.057 0.943
50 H 0.092 0.908
51 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.419 -10.415 26.168 28.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.022 4.022
3 N -0.326 5.326
4 C 0.140 3.860
5 C -0.579 4.579
6 H 0.074 0.926
7 C -0.194 4.194
8 N -0.569 5.569
9 Si 0.793 3.207
10 H -0.188 1.188
11 H -0.208 1.208
12 H -0.196 1.196
13 C 0.313 3.687
14 O -0.480 6.480
15 C -0.152 4.152
16 H 0.176 0.824
17 C -0.170 4.170
18 H 0.128 0.872
19 C 0.025 3.975
20 N -0.359 5.359
21 C 0.427 3.573
22 O -0.484 6.484
23 O -0.281 6.281
24 C 0.087 3.913
25 C -0.235 4.235
26 C -0.193 4.193
27 C -0.237 4.237
28 C 0.042 3.958
29 C -0.157 4.157
30 H 0.132 0.868
31 H 0.114 0.886
32 H 0.082 0.918
33 H 0.053 0.947
34 H 0.089 0.911
35 H 0.123 0.877
36 H 0.040 0.960
37 H 0.013 0.987
38 H 0.075 0.925
39 H 0.131 0.869
40 H 0.118 0.882
41 H 0.082 0.918
42 H 0.109 0.891
43 H 0.081 0.919
44 H 0.085 0.915
45 H 0.121 0.879
46 H 0.090 0.910
47 H 0.080 0.920
48 H 0.110 0.890
49 H 0.076 0.924
50 H 0.110 0.890
51 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges -5.625 -9.780 26.288 28.607
hybrid contribution 0.668 0.714 -1.164 1.520
sum -4.957 -9.067 25.124 27.166
Atomic orbital electron populations
1.22145 0.94574 1.03480 1.01665 1.21797 0.95332 0.81096 1.04002
1.48205 1.63143 1.15269 1.05934 1.18712 0.95397 0.91428 0.80423
1.21705 0.97801 1.31908 1.06486 0.92650 1.25889 1.02473 0.94500
0.96515 1.70055 1.37838 1.34251 1.14798 0.85399 0.78938 0.78139
0.78245 1.18767 1.20833 1.19606 1.20170 0.77109 0.85793 0.85591
1.90646 1.48538 1.20774 1.88020 1.22279 1.03640 1.01318 0.87940
0.82396 1.23558 0.99601 1.01339 0.92461 0.87203 1.22635 0.81884
1.01163 0.91804 1.48922 1.11348 1.73007 1.02650 1.17524 0.82813
0.76052 0.80958 1.90895 1.17989 1.57363 1.82159 1.86319 1.40071
1.84162 1.17568 1.22437 0.95825 0.96709 0.76280 1.22456 1.01732
0.95602 1.03675 1.21883 0.96423 1.03054 0.97904 1.22478 0.99339
0.97586 1.04330 1.21749 0.95208 0.99093 0.79751 1.23557 0.90805
1.02387 0.98912 0.86752 0.88629 0.91835 0.94710 0.91097 0.87674
0.95966 0.98749 0.92453 0.86883 0.88192 0.91791 0.89087 0.91917
0.91541 0.87896 0.91044 0.92035 0.88971 0.92411 0.88995 0.87137
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16
2 C 0.10 2.86 5.95 86.38 0.51 3.37 16
3 N -0.60 -24.55 2.46 -826.16 -2.03 -26.58 16
4 C 0.26 14.08 5.16 85.63 0.44 14.52 16
5 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16
6 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16
7 C 0.01 0.29 5.46 84.65 0.46 0.75 16
8 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16
9 Si 0.97 44.73 29.54 68.60 2.03 46.76 16
10 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16
11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16
13 C 0.52 21.12 7.45 87.65 0.65 21.78 16
14 O -0.60 -30.78 15.91 -3.04 -0.05 -30.83 16
15 C -0.13 -3.35 4.83 -11.54 -0.06 -3.41 16
16 H 0.16 2.88 6.44 -2.39 -0.02 2.87 16
17 C -0.15 -3.60 6.49 -9.87 -0.06 -3.66 16
18 H 0.11 3.25 7.80 -2.38 -0.02 3.23 16
19 C 0.15 2.57 7.13 85.79 0.61 3.18 16
20 N -0.62 -12.78 3.39 -928.23 -3.15 -15.92 16
21 C 0.67 16.20 8.03 129.79 1.04 17.24 16
22 O -0.59 -16.68 12.15 19.79 0.24 -16.44 16
23 O -0.37 -7.88 9.48 -55.43 -0.53 -8.41 16
24 C 0.12 2.06 1.13 -10.79 -0.01 2.05 16
25 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16
26 C -0.14 -1.44 8.85 71.98 0.64 -0.80 16
27 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16
28 C 0.16 2.92 6.86 86.53 0.59 3.52 16
29 C -0.14 -3.07 6.84 -9.87 -0.07 -3.14 16
30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16
31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16
33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16
34 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16
35 H 0.11 2.17 6.00 -2.38 -0.01 2.16 16
36 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16
37 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16
38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16
39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16
40 H 0.10 1.69 7.95 -2.39 -0.02 1.67 16
41 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16
42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16
43 H 0.06 1.33 5.88 -2.38 -0.01 1.32 16
44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16
45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16
46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16
47 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16
48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16
49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16
50 H 0.09 1.75 7.88 -2.38 -0.02 1.73 16
51 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16
Total: -1.00 -79.16 411.43 4.65 -74.51
By element:
Atomic # 1 Polarization: 15.15 SS G_CDS: 0.90 Total: 16.06 kcal
Atomic # 6 Polarization: 10.05 SS G_CDS: 6.94 Total: 16.99 kcal
Atomic # 7 Polarization: -93.75 SS G_CDS: -4.89 Total: -98.64 kcal
Atomic # 8 Polarization: -55.34 SS G_CDS: -0.33 Total: -55.68 kcal
Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal
Total: -79.16 4.65 -74.51 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000814110665.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.688 kcal
(2) G-P(sol) polarization free energy of solvation -79.158 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.846 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.511 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds