Wall clock time and date at job start Tue Mar 31 2020 20:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.46499 * 120.00136 * 269.99459 * 3 2 1 5 5 C 1.50697 * 109.47293 * 270.00491 * 4 3 2 6 6 H 1.07997 * 120.00010 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00091 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00149 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00247 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47226 * 89.99205 * 9 7 5 11 11 H 1.48494 * 109.47051 * 209.99874 * 9 7 5 12 12 H 1.48508 * 109.46947 * 329.99558 * 9 7 5 13 13 C 1.34784 * 119.99971 * 89.99654 * 3 2 1 14 14 O 1.21283 * 119.99649 * 179.97438 * 13 3 2 15 15 C 1.50697 * 119.99774 * 359.72768 * 13 3 2 16 16 H 1.08997 * 115.52115 * 34.57913 * 15 13 3 17 17 C 1.53006 * 117.44076 * 179.97438 * 15 13 3 18 18 H 1.09007 * 119.53640 * 355.87983 * 17 15 13 19 19 C 1.54381 * 118.12331 * 200.78484 * 17 15 13 20 20 N 1.51830 * 102.86883 * 271.97891 * 19 17 15 21 21 C 1.34775 * 127.61424 * 219.45595 * 20 19 17 22 22 O 1.21515 * 120.00146 * 180.33366 * 21 20 19 23 23 O 1.34634 * 120.00034 * 0.33468 * 21 20 19 24 24 C 1.45195 * 117.00245 * 179.97438 * 23 21 20 25 25 C 1.52999 * 109.46954 * 60.00180 * 24 23 21 26 26 C 1.53003 * 109.47343 * 180.02562 * 24 23 21 27 27 C 1.52999 * 109.47076 * 300.00364 * 24 23 21 28 28 C 1.48147 * 104.54736 * 39.72912 * 20 19 17 29 29 C 1.53003 * 117.43873 * 249.23535 * 15 13 3 30 30 H 1.08999 * 119.54295 * 4.12358 * 29 15 13 31 31 H 1.08996 * 109.47549 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47074 * 300.00425 * 1 2 3 33 33 H 1.09007 * 109.46853 * 59.99785 * 1 2 3 34 34 H 1.08998 * 109.47074 * 239.99575 * 2 1 3 35 35 H 1.09008 * 109.46412 * 119.99581 * 2 1 3 36 36 H 1.08997 * 109.46865 * 30.00228 * 4 3 2 37 37 H 1.08998 * 109.47058 * 149.99741 * 4 3 2 38 38 H 0.96995 * 120.00744 * 180.02562 * 8 7 5 39 39 H 1.08995 * 110.40836 * 31.59228 * 19 17 15 40 40 H 1.09000 * 110.40919 * 154.02731 * 19 17 15 41 41 H 1.08998 * 109.47433 * 60.00179 * 25 24 23 42 42 H 1.09002 * 109.47363 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.47442 * 300.00039 * 25 24 23 44 44 H 1.08997 * 109.46922 * 60.00489 * 26 24 23 45 45 H 1.09002 * 109.47266 * 180.02562 * 26 24 23 46 46 H 1.08997 * 109.46720 * 300.00531 * 26 24 23 47 47 H 1.08998 * 109.47410 * 60.00258 * 27 24 23 48 48 H 1.09002 * 109.46743 * 179.97438 * 27 24 23 49 49 H 1.08997 * 109.47395 * 299.99637 * 27 24 23 50 50 H 1.09007 * 110.40989 * 201.35892 * 28 20 19 51 51 H 1.09001 * 110.50532 * 78.97592 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2627 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0957 7 6 4.1496 2.3903 -2.8773 8 7 3.3497 3.1265 -3.6175 9 14 5.9140 2.0972 -3.4162 10 1 5.9778 0.8765 -4.2593 11 1 6.3930 3.2649 -4.1986 12 1 6.7739 1.9173 -2.2188 13 6 2.2429 2.0166 1.1673 14 8 2.6477 3.1599 1.1672 15 6 1.9858 1.3082 2.4723 16 1 2.1957 0.2387 2.4754 17 6 2.2611 2.0842 3.7619 18 1 2.6922 3.0839 3.7060 19 6 2.4832 1.2808 5.0614 20 7 1.0736 1.1118 5.5996 21 6 0.6695 1.1805 6.8835 22 8 -0.5020 1.0163 7.1614 23 8 1.5639 1.4311 7.8582 24 6 1.0577 1.4915 9.2177 25 6 0.4162 0.1513 9.5830 26 6 2.2115 1.7841 10.1790 27 6 0.0119 2.6032 9.3236 28 6 0.2461 0.8485 4.3993 29 6 0.8103 1.7977 3.3205 30 1 0.1605 2.5838 2.9358 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8932 -0.5138 0.8901 36 1 1.5819 1.6877 -2.0283 37 1 2.0957 3.1410 -1.1384 38 1 3.6757 3.5169 -4.4434 39 1 2.9524 0.3222 4.8400 40 1 3.0937 1.8512 5.7613 41 1 1.1612 -0.6407 9.5076 42 1 0.0366 0.1964 10.6038 43 1 -0.4059 -0.0567 8.8981 44 1 2.6680 2.7390 9.9186 45 1 1.8316 1.8289 11.1997 46 1 2.9568 0.9924 10.1035 47 1 -0.8102 2.3951 8.6388 48 1 -0.3684 2.6482 10.3441 49 1 0.4688 3.5579 9.0634 50 1 -0.7999 1.0807 4.6002 51 1 0.3503 -0.1897 4.0839 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814110665.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:54 Heat of formation + Delta-G solvation = -95.198827 kcal Electronic energy + Delta-G solvation = -30110.757380 eV Core-core repulsion = 26010.978469 eV Total energy + Delta-G solvation = -4099.778911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98574 -41.25834 -39.64770 -37.80707 -36.94930 -35.30017 -34.89055 -34.14773 -31.58006 -29.66495 -29.50809 -28.33857 -28.26655 -27.66743 -25.41473 -24.29459 -23.29154 -22.36184 -21.22854 -20.43367 -19.84668 -18.93554 -18.64924 -18.13888 -17.56831 -17.46574 -17.16528 -16.39475 -16.13038 -15.99730 -15.48737 -15.23603 -14.98744 -14.90222 -14.60028 -14.39343 -14.25836 -13.83196 -13.72401 -13.55581 -13.37448 -13.28231 -13.22741 -13.08620 -13.07212 -12.85269 -12.83050 -12.65273 -12.59657 -12.46621 -12.45506 -12.29184 -12.16060 -11.89420 -11.71560 -11.37680 -11.30582 -11.25182 -10.95184 -10.63814 -10.62420 -9.95330 -9.44030 -8.22091 -6.36938 0.98058 1.36891 1.40030 1.49687 1.55858 1.73238 2.23001 2.39456 2.55523 2.82525 3.07420 3.35138 3.55411 3.66635 3.77710 3.82574 3.89304 3.94476 3.97303 4.05696 4.28707 4.35673 4.48215 4.51431 4.60331 4.63713 4.64545 4.72677 4.76238 4.79043 4.80238 4.86498 4.90296 4.97409 4.98991 5.00160 5.03831 5.09098 5.12360 5.16413 5.23244 5.30449 5.35565 5.44911 5.46544 5.58624 5.86104 6.06365 6.37409 6.70418 6.80159 7.23506 7.28241 7.47241 8.84971 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022761 B = 0.002200 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.896045 B =12725.075091 C =13346.263757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.100 3.900 3 N -0.596 5.596 4 C 0.262 3.738 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.969 3.031 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.525 3.475 14 O -0.598 6.598 15 C -0.131 4.131 16 H 0.159 0.841 17 C -0.150 4.150 18 H 0.110 0.890 19 C 0.145 3.855 20 N -0.618 5.618 21 C 0.670 3.330 22 O -0.593 6.593 23 O -0.367 6.367 24 C 0.124 3.876 25 C -0.178 4.178 26 C -0.136 4.136 27 C -0.180 4.180 28 C 0.162 3.838 29 C -0.137 4.137 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.022 0.978 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.057 0.943 50 H 0.092 0.908 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -10.415 26.168 28.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.140 3.860 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.313 3.687 14 O -0.480 6.480 15 C -0.152 4.152 16 H 0.176 0.824 17 C -0.170 4.170 18 H 0.128 0.872 19 C 0.025 3.975 20 N -0.359 5.359 21 C 0.427 3.573 22 O -0.484 6.484 23 O -0.281 6.281 24 C 0.087 3.913 25 C -0.235 4.235 26 C -0.193 4.193 27 C -0.237 4.237 28 C 0.042 3.958 29 C -0.157 4.157 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.040 0.960 37 H 0.013 0.987 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.121 0.879 46 H 0.090 0.910 47 H 0.080 0.920 48 H 0.110 0.890 49 H 0.076 0.924 50 H 0.110 0.890 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.625 -9.780 26.288 28.607 hybrid contribution 0.668 0.714 -1.164 1.520 sum -4.957 -9.067 25.124 27.166 Atomic orbital electron populations 1.22145 0.94574 1.03480 1.01665 1.21797 0.95332 0.81096 1.04002 1.48205 1.63143 1.15269 1.05934 1.18712 0.95397 0.91428 0.80423 1.21705 0.97801 1.31908 1.06486 0.92650 1.25889 1.02473 0.94500 0.96515 1.70055 1.37838 1.34251 1.14798 0.85399 0.78938 0.78139 0.78245 1.18767 1.20833 1.19606 1.20170 0.77109 0.85793 0.85591 1.90646 1.48538 1.20774 1.88020 1.22279 1.03640 1.01318 0.87940 0.82396 1.23558 0.99601 1.01339 0.92461 0.87203 1.22635 0.81884 1.01163 0.91804 1.48922 1.11348 1.73007 1.02650 1.17524 0.82813 0.76052 0.80958 1.90895 1.17989 1.57363 1.82159 1.86319 1.40071 1.84162 1.17568 1.22437 0.95825 0.96709 0.76280 1.22456 1.01732 0.95602 1.03675 1.21883 0.96423 1.03054 0.97904 1.22478 0.99339 0.97586 1.04330 1.21749 0.95208 0.99093 0.79751 1.23557 0.90805 1.02387 0.98912 0.86752 0.88629 0.91835 0.94710 0.91097 0.87674 0.95966 0.98749 0.92453 0.86883 0.88192 0.91791 0.89087 0.91917 0.91541 0.87896 0.91044 0.92035 0.88971 0.92411 0.88995 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.10 2.86 5.95 86.38 0.51 3.37 16 3 N -0.60 -24.55 2.46 -826.16 -2.03 -26.58 16 4 C 0.26 14.08 5.16 85.63 0.44 14.52 16 5 C -0.54 -30.97 9.39 25.60 0.24 -30.73 16 6 H 0.06 3.12 7.81 -2.91 -0.02 3.10 16 7 C 0.01 0.29 5.46 84.65 0.46 0.75 16 8 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 9 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 10 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 C 0.52 21.12 7.45 87.65 0.65 21.78 16 14 O -0.60 -30.78 15.91 -3.04 -0.05 -30.83 16 15 C -0.13 -3.35 4.83 -11.54 -0.06 -3.41 16 16 H 0.16 2.88 6.44 -2.39 -0.02 2.87 16 17 C -0.15 -3.60 6.49 -9.87 -0.06 -3.66 16 18 H 0.11 3.25 7.80 -2.38 -0.02 3.23 16 19 C 0.15 2.57 7.13 85.79 0.61 3.18 16 20 N -0.62 -12.78 3.39 -928.23 -3.15 -15.92 16 21 C 0.67 16.20 8.03 129.79 1.04 17.24 16 22 O -0.59 -16.68 12.15 19.79 0.24 -16.44 16 23 O -0.37 -7.88 9.48 -55.43 -0.53 -8.41 16 24 C 0.12 2.06 1.13 -10.79 -0.01 2.05 16 25 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 26 C -0.14 -1.44 8.85 71.98 0.64 -0.80 16 27 C -0.18 -3.09 8.37 71.98 0.60 -2.48 16 28 C 0.16 2.92 6.86 86.53 0.59 3.52 16 29 C -0.14 -3.07 6.84 -9.87 -0.07 -3.14 16 30 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 31 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 35 H 0.11 2.17 6.00 -2.38 -0.01 2.16 16 36 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 37 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.10 1.69 7.95 -2.39 -0.02 1.67 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 42 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.33 5.88 -2.38 -0.01 1.32 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 48 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.09 1.75 7.88 -2.38 -0.02 1.73 16 51 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -79.16 411.43 4.65 -74.51 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.90 Total: 16.06 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.94 Total: 16.99 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -4.89 Total: -98.64 kcal Atomic # 8 Polarization: -55.34 SS G_CDS: -0.33 Total: -55.68 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -79.16 4.65 -74.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814110665.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.688 kcal (2) G-P(sol) polarization free energy of solvation -79.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds