Wall clock time and date at job start Tue Mar 31 2020 20:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46568 * 2 1 4 4 C 1.46501 * 119.99574 * 271.12962 * 3 2 1 5 5 C 1.50703 * 109.47266 * 266.65472 * 4 3 2 6 6 H 1.08002 * 119.99678 * 354.66244 * 5 4 3 7 7 C 1.37881 * 119.99809 * 174.66317 * 5 4 3 8 8 N 1.31507 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99590 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47336 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47249 * 120.00028 * 9 7 5 12 12 H 1.48500 * 109.47010 * 239.99726 * 9 7 5 13 13 C 1.34773 * 120.00509 * 91.13387 * 3 2 1 14 14 O 1.21280 * 120.00202 * 185.16549 * 13 3 2 15 15 C 1.50700 * 119.99799 * 5.16303 * 13 3 2 16 16 H 1.09006 * 110.58671 * 17.78567 * 15 13 3 17 17 C 1.54954 * 110.66367 * 254.79432 * 15 13 3 18 18 C 1.54703 * 102.70358 * 203.84008 * 17 15 13 19 19 H 1.09000 * 117.82425 * 162.50540 * 18 17 15 20 20 C 1.53121 * 117.54878 * 319.12207 * 18 17 15 21 21 C 1.52871 * 60.43408 * 91.99035 * 20 18 17 22 22 H 1.09003 * 119.42725 * 110.66803 * 21 20 18 23 23 N 1.47381 * 118.84627 * 266.10946 * 21 20 18 24 24 C 1.34777 * 126.94454 * 219.75776 * 23 21 20 25 25 O 1.21510 * 120.00299 * 4.24783 * 24 23 21 26 26 O 1.34643 * 119.99706 * 184.24792 * 24 23 21 27 27 C 1.45204 * 116.99623 * 181.91839 * 26 24 23 28 28 C 1.53002 * 109.47069 * 59.09278 * 27 26 24 29 29 C 1.53003 * 109.46727 * 179.09395 * 27 26 24 30 30 C 1.52999 * 109.47189 * 299.09438 * 27 26 24 31 31 H 1.09009 * 109.46740 * 185.01535 * 1 2 3 32 32 H 1.08994 * 109.47090 * 305.01339 * 1 2 3 33 33 H 1.08994 * 109.46745 * 65.02149 * 1 2 3 34 34 H 1.08998 * 109.47130 * 239.99710 * 2 1 3 35 35 H 1.09004 * 109.46914 * 119.99174 * 2 1 3 36 36 H 1.09000 * 109.47152 * 26.65646 * 4 3 2 37 37 H 1.09000 * 109.47459 * 146.65301 * 4 3 2 38 38 H 0.97002 * 120.00398 * 179.97438 * 8 7 5 39 39 H 1.09004 * 110.76418 * 322.14781 * 17 15 13 40 40 H 1.09000 * 110.76590 * 85.53577 * 17 15 13 41 41 H 1.09009 * 117.45227 * 199.60589 * 20 18 17 42 42 H 1.08994 * 117.46157 * 344.37048 * 20 18 17 43 43 H 1.09002 * 109.46999 * 60.00047 * 28 27 26 44 44 H 1.08998 * 109.46774 * 179.97438 * 28 27 26 45 45 H 1.08997 * 109.47218 * 300.00149 * 28 27 26 46 46 H 1.08998 * 109.47207 * 62.02450 * 29 27 26 47 47 H 1.09003 * 109.46737 * 182.02272 * 29 27 26 48 48 H 1.08995 * 109.46872 * 302.01971 * 29 27 26 49 49 H 1.08996 * 109.47568 * 59.99801 * 30 27 26 50 50 H 1.08998 * 109.47089 * 180.02562 * 30 27 26 51 51 H 1.09006 * 109.46860 * 299.99922 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2388 2.0802 -1.2685 5 6 3.6761 1.9147 -1.6901 6 1 4.3776 1.4203 -1.0344 7 6 4.0956 2.3944 -2.9128 8 7 3.2412 2.9959 -3.7114 9 14 5.8770 2.1886 -3.4355 10 1 6.6284 1.4831 -2.3664 11 1 5.9366 1.3950 -4.6892 12 1 6.4827 3.5247 -3.6664 13 6 2.2646 2.0091 1.1669 14 8 2.5785 3.1805 1.1708 15 6 2.1501 1.2553 2.4668 16 1 2.1737 0.1800 2.2897 17 6 0.8568 1.6572 3.2198 18 6 1.1996 1.3177 4.6897 19 1 0.5846 1.7636 5.4715 20 6 1.9644 0.0184 4.9567 21 6 2.7383 1.3209 4.7529 22 1 3.2618 1.7704 5.5967 23 7 3.2262 1.6544 3.4028 24 6 4.4121 2.2100 3.0843 25 8 5.2380 2.4177 3.9510 26 8 4.6815 2.5349 1.8057 27 6 5.9945 3.0899 1.5294 28 6 7.0710 2.0886 1.9533 29 6 6.1232 3.3735 0.0314 30 6 6.1728 4.3923 2.3122 31 1 -0.3633 -1.0238 0.0899 32 1 -0.3633 0.5896 0.8416 33 1 -0.3632 0.4339 -0.9315 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 1.5852 1.6602 -2.0331 37 1 2.0167 3.1399 -1.1430 38 1 3.5363 3.3337 -4.5714 39 1 0.6583 2.7229 3.1054 40 1 0.0089 1.0659 2.8742 41 1 1.9245 -0.3898 5.9666 42 1 1.9997 -0.7181 4.1539 43 1 6.9440 1.1608 1.3955 44 1 8.0566 2.5051 1.7454 45 1 6.9792 1.8865 3.0204 46 1 5.3796 4.1138 -0.2635 47 1 7.1214 3.7565 -0.1814 48 1 5.9607 2.4523 -0.5280 49 1 6.0810 4.1903 3.3794 50 1 7.1583 4.8091 2.1044 51 1 5.4059 5.1056 2.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814348170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:49 Heat of formation + Delta-G solvation = -59.929392 kcal Electronic energy + Delta-G solvation = -33371.791236 eV Core-core repulsion = 29273.541722 eV Total energy + Delta-G solvation = -4098.249514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02578 -39.54402 -38.38504 -36.24107 -35.31549 -33.71737 -32.83156 -32.39874 -30.48567 -30.02118 -27.34705 -26.97146 -26.73051 -24.94489 -23.62897 -23.00341 -22.58556 -20.68056 -20.19305 -19.55748 -18.32574 -17.32174 -16.98640 -16.33006 -16.05944 -15.58506 -15.25126 -15.15484 -14.57046 -14.40321 -14.24911 -13.87251 -13.78185 -13.52194 -13.20340 -13.08836 -12.87983 -12.74779 -12.29199 -12.09008 -12.04562 -11.83264 -11.75294 -11.67756 -11.41290 -11.36690 -11.22067 -11.19931 -11.08866 -10.89193 -10.79926 -10.68771 -10.61825 -10.42920 -10.20148 -10.07415 -9.69943 -9.63522 -9.46755 -8.93554 -8.42569 -8.38758 -7.61348 -6.03219 -4.04546 2.25693 3.06118 3.26570 3.33761 3.36013 3.40869 3.63779 3.83381 4.24932 4.36431 4.43677 4.48382 4.73832 4.89826 4.95730 5.05784 5.22859 5.30818 5.32015 5.36493 5.40241 5.45574 5.48946 5.60290 5.63808 5.73640 5.78843 5.88294 5.92390 5.93612 5.99475 6.03564 6.10373 6.19560 6.21931 6.25513 6.38384 6.43981 6.47739 6.56717 6.74557 6.88351 7.08420 7.12203 7.46280 7.58209 7.71606 7.95122 8.27914 8.42883 8.73299 8.93995 9.11857 9.58367 11.05381 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.006114 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.480664 B = 4578.360897 C = 6518.169938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.250 3.750 5 C -0.509 4.509 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.882 3.118 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.282 1.282 13 C 0.512 3.488 14 O -0.506 6.506 15 C 0.101 3.899 16 H 0.098 0.902 17 C -0.091 4.091 18 C -0.178 4.178 19 H 0.127 0.873 20 C -0.161 4.161 21 C 0.088 3.912 22 H 0.140 0.860 23 N -0.569 5.569 24 C 0.677 3.323 25 O -0.578 6.578 26 O -0.312 6.312 27 C 0.140 3.860 28 C -0.182 4.182 29 C -0.143 4.143 30 C -0.177 4.177 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.038 0.962 38 H 0.261 0.739 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 -6.711 14.059 15.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.022 4.022 3 N -0.326 5.326 4 C 0.131 3.869 5 C -0.548 4.548 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.710 3.290 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.208 1.208 13 C 0.296 3.704 14 O -0.380 6.380 15 C -0.006 4.006 16 H 0.115 0.885 17 C -0.130 4.130 18 C -0.197 4.197 19 H 0.144 0.856 20 C -0.200 4.200 21 C -0.016 4.016 22 H 0.157 0.843 23 N -0.309 5.309 24 C 0.434 3.566 25 O -0.469 6.469 26 O -0.224 6.224 27 C 0.103 3.897 28 C -0.239 4.239 29 C -0.200 4.200 30 C -0.234 4.234 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.098 0.902 50 H 0.081 0.919 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.017 -5.777 13.974 15.419 hybrid contribution 1.039 -0.217 -0.514 1.179 sum -1.978 -5.994 13.460 14.867 Atomic orbital electron populations 1.22260 0.96628 1.01309 1.02579 1.21488 0.93610 0.84551 1.02507 1.48160 1.63910 1.13031 1.07493 1.19246 0.96671 0.93127 0.77861 1.21469 0.94835 1.36990 1.01497 0.91973 1.24851 0.97149 0.95420 0.96448 1.69926 1.34155 1.39204 1.10369 0.86753 0.85742 0.78071 0.78430 1.19365 1.21362 1.20777 1.19663 0.78930 0.87595 0.84225 1.90685 1.45283 1.15645 1.86383 1.22458 0.87834 0.99749 0.90558 0.88496 1.22227 0.95595 1.03190 0.91953 1.23671 0.95686 1.01985 0.98356 0.85554 1.23439 1.01518 0.91435 1.03600 1.22134 0.92782 1.01188 0.85525 0.84276 1.46566 1.14425 1.63188 1.06719 1.17592 0.80366 0.75922 0.82706 1.90836 1.46128 1.59791 1.50176 1.86772 1.36488 1.74758 1.24396 1.22007 0.78602 0.92459 0.96592 1.22520 0.98327 0.99309 1.03737 1.21987 1.01353 1.04865 0.91774 1.22449 1.01869 0.96715 1.02357 0.92203 0.92932 0.91955 0.89923 0.91930 0.94812 0.94396 0.92945 0.89195 0.89293 0.86892 0.88444 0.92421 0.91641 0.90016 0.90424 0.91914 0.90036 0.90166 0.91942 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.10 1.56 6.02 -4.04 -0.02 1.54 16 3 N -0.59 -11.87 2.46 -175.05 -0.43 -12.30 16 4 C 0.25 6.19 5.18 -5.19 -0.03 6.16 16 5 C -0.51 -13.47 8.74 -34.44 -0.30 -13.77 16 6 H 0.06 1.68 6.44 -52.49 -0.34 1.34 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.90 -25.69 13.29 55.43 0.74 -24.95 16 9 Si 0.88 21.05 27.86 -169.99 -4.74 16.32 16 10 H -0.27 -6.21 6.67 56.52 0.38 -5.83 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.51 10.24 5.37 -10.99 -0.06 10.18 16 14 O -0.51 -12.17 13.88 -18.60 -0.26 -12.42 16 15 C 0.10 1.56 2.73 -67.17 -0.18 1.37 16 16 H 0.10 1.32 4.71 -51.93 -0.24 1.08 16 17 C -0.09 -1.11 6.44 -24.80 -0.16 -1.27 16 18 C -0.18 -1.77 7.21 -89.14 -0.64 -2.41 16 19 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.16 -1.44 9.85 -26.73 -0.26 -1.71 16 21 C 0.09 1.11 7.17 -66.99 -0.48 0.63 16 22 H 0.14 1.71 8.08 -51.93 -0.42 1.29 16 23 N -0.57 -9.55 3.21 -162.05 -0.52 -10.07 16 24 C 0.68 13.46 7.56 54.06 0.41 13.87 16 25 O -0.58 -11.73 12.24 -19.28 -0.24 -11.97 16 26 O -0.31 -6.70 5.91 -48.37 -0.29 -6.99 16 27 C 0.14 2.73 1.13 -90.62 -0.10 2.62 16 28 C -0.18 -3.14 8.36 37.16 0.31 -2.82 16 29 C -0.14 -2.91 8.45 37.16 0.31 -2.60 16 30 C -0.18 -3.14 8.39 37.16 0.31 -2.83 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.62 7.09 -51.93 -0.37 0.25 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.32 8.08 -51.93 -0.42 0.90 16 35 H 0.06 0.81 5.57 -51.93 -0.29 0.52 16 36 H 0.03 0.86 8.05 -51.93 -0.42 0.44 16 37 H 0.04 1.07 7.46 -51.93 -0.39 0.68 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 39 H 0.09 1.25 8.05 -51.93 -0.42 0.84 16 40 H 0.09 0.88 7.09 -51.93 -0.37 0.51 16 41 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.10 0.88 7.14 -51.93 -0.37 0.51 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.08 1.46 5.88 -51.93 -0.31 1.16 16 46 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.83 4.12 -51.93 -0.21 1.62 16 49 H 0.08 1.49 5.88 -51.93 -0.31 1.18 16 50 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 51 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 391.38 15.07 5.90 5.90 Total: -1.00 -32.54 391.38 -8.70 -41.24 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -8.25 Total: 6.41 kcal Atomic # 6 Polarization: 9.45 SS G_CDS: -0.61 Total: 8.84 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.22 Total: -47.32 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.78 Total: -31.38 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.74 Total: 16.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.54 -8.70 -41.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814348170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.688 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds