Wall clock time and date at job start Tue Mar 31 2020 20:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.46568 * 2 1 4 4 C 1.46501 * 119.99574 * 271.12962 * 3 2 1 5 5 C 1.50703 * 109.47266 * 266.65472 * 4 3 2 6 6 H 1.08002 * 119.99678 * 354.66244 * 5 4 3 7 7 C 1.37881 * 119.99809 * 174.66317 * 5 4 3 8 8 N 1.31507 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99590 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47336 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47249 * 120.00028 * 9 7 5 12 12 H 1.48500 * 109.47010 * 239.99726 * 9 7 5 13 13 C 1.34773 * 120.00509 * 91.13387 * 3 2 1 14 14 O 1.21280 * 120.00202 * 185.16549 * 13 3 2 15 15 C 1.50700 * 119.99799 * 5.16303 * 13 3 2 16 16 H 1.09006 * 110.58671 * 17.78567 * 15 13 3 17 17 C 1.54954 * 110.66367 * 254.79432 * 15 13 3 18 18 C 1.54703 * 102.70358 * 203.84008 * 17 15 13 19 19 H 1.09000 * 117.82425 * 162.50540 * 18 17 15 20 20 C 1.53121 * 117.54878 * 319.12207 * 18 17 15 21 21 C 1.52871 * 60.43408 * 91.99035 * 20 18 17 22 22 H 1.09003 * 119.42725 * 110.66803 * 21 20 18 23 23 N 1.47381 * 118.84627 * 266.10946 * 21 20 18 24 24 C 1.34777 * 126.94454 * 219.75776 * 23 21 20 25 25 O 1.21510 * 120.00299 * 4.24783 * 24 23 21 26 26 O 1.34643 * 119.99706 * 184.24792 * 24 23 21 27 27 C 1.45204 * 116.99623 * 181.91839 * 26 24 23 28 28 C 1.53002 * 109.47069 * 59.09278 * 27 26 24 29 29 C 1.53003 * 109.46727 * 179.09395 * 27 26 24 30 30 C 1.52999 * 109.47189 * 299.09438 * 27 26 24 31 31 H 1.09009 * 109.46740 * 185.01535 * 1 2 3 32 32 H 1.08994 * 109.47090 * 305.01339 * 1 2 3 33 33 H 1.08994 * 109.46745 * 65.02149 * 1 2 3 34 34 H 1.08998 * 109.47130 * 239.99710 * 2 1 3 35 35 H 1.09004 * 109.46914 * 119.99174 * 2 1 3 36 36 H 1.09000 * 109.47152 * 26.65646 * 4 3 2 37 37 H 1.09000 * 109.47459 * 146.65301 * 4 3 2 38 38 H 0.97002 * 120.00398 * 179.97438 * 8 7 5 39 39 H 1.09004 * 110.76418 * 322.14781 * 17 15 13 40 40 H 1.09000 * 110.76590 * 85.53577 * 17 15 13 41 41 H 1.09009 * 117.45227 * 199.60589 * 20 18 17 42 42 H 1.08994 * 117.46157 * 344.37048 * 20 18 17 43 43 H 1.09002 * 109.46999 * 60.00047 * 28 27 26 44 44 H 1.08998 * 109.46774 * 179.97438 * 28 27 26 45 45 H 1.08997 * 109.47218 * 300.00149 * 28 27 26 46 46 H 1.08998 * 109.47207 * 62.02450 * 29 27 26 47 47 H 1.09003 * 109.46737 * 182.02272 * 29 27 26 48 48 H 1.08995 * 109.46872 * 302.01971 * 29 27 26 49 49 H 1.08996 * 109.47568 * 59.99801 * 30 27 26 50 50 H 1.08998 * 109.47089 * 180.02562 * 30 27 26 51 51 H 1.09006 * 109.46860 * 299.99922 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2388 2.0802 -1.2685 5 6 3.6761 1.9147 -1.6901 6 1 4.3776 1.4203 -1.0344 7 6 4.0956 2.3944 -2.9128 8 7 3.2412 2.9959 -3.7114 9 14 5.8770 2.1886 -3.4355 10 1 6.6284 1.4831 -2.3664 11 1 5.9366 1.3950 -4.6892 12 1 6.4827 3.5247 -3.6664 13 6 2.2646 2.0091 1.1669 14 8 2.5785 3.1805 1.1708 15 6 2.1501 1.2553 2.4668 16 1 2.1737 0.1800 2.2897 17 6 0.8568 1.6572 3.2198 18 6 1.1996 1.3177 4.6897 19 1 0.5846 1.7636 5.4715 20 6 1.9644 0.0184 4.9567 21 6 2.7383 1.3209 4.7529 22 1 3.2618 1.7704 5.5967 23 7 3.2262 1.6544 3.4028 24 6 4.4121 2.2100 3.0843 25 8 5.2380 2.4177 3.9510 26 8 4.6815 2.5349 1.8057 27 6 5.9945 3.0899 1.5294 28 6 7.0710 2.0886 1.9533 29 6 6.1232 3.3735 0.0314 30 6 6.1728 4.3923 2.3122 31 1 -0.3633 -1.0238 0.0899 32 1 -0.3633 0.5896 0.8416 33 1 -0.3632 0.4339 -0.9315 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5137 0.8901 36 1 1.5852 1.6602 -2.0331 37 1 2.0167 3.1399 -1.1430 38 1 3.5363 3.3337 -4.5714 39 1 0.6583 2.7229 3.1054 40 1 0.0089 1.0659 2.8742 41 1 1.9245 -0.3898 5.9666 42 1 1.9997 -0.7181 4.1539 43 1 6.9440 1.1608 1.3955 44 1 8.0566 2.5051 1.7454 45 1 6.9792 1.8865 3.0204 46 1 5.3796 4.1138 -0.2635 47 1 7.1214 3.7565 -0.1814 48 1 5.9607 2.4523 -0.5280 49 1 6.0810 4.1903 3.3794 50 1 7.1583 4.8091 2.1044 51 1 5.4059 5.1056 2.0102 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814348170.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:49 Heat of formation + Delta-G solvation = -79.425894 kcal Electronic energy + Delta-G solvation = -33372.636668 eV Core-core repulsion = 29273.541722 eV Total energy + Delta-G solvation = -4099.094945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29455 -40.95130 -39.79528 -37.68561 -36.91212 -35.18735 -34.81572 -33.65391 -31.85605 -31.29109 -29.10413 -28.38718 -28.31196 -26.32967 -24.95794 -24.45788 -24.01333 -21.86246 -21.18177 -20.99707 -19.77105 -18.82398 -18.40086 -18.28308 -17.55219 -17.10132 -16.84485 -16.45255 -16.10354 -15.79205 -15.48938 -15.33036 -15.28924 -14.81314 -14.52734 -14.37347 -14.32266 -13.99183 -13.76699 -13.60487 -13.31582 -13.24244 -13.20238 -13.16824 -13.00445 -12.89052 -12.72068 -12.63893 -12.56938 -12.40823 -12.31002 -12.20508 -11.96959 -11.81135 -11.64804 -11.52877 -11.24658 -11.07587 -11.03927 -10.57729 -10.50251 -9.56199 -9.32884 -8.14877 -6.23674 0.99179 1.34085 1.36510 1.46632 1.68594 1.88177 2.28906 2.42607 2.75076 2.94303 3.16607 3.34192 3.48349 3.68380 3.74722 3.80355 3.84657 3.96283 3.98133 4.02397 4.24662 4.42743 4.46150 4.51979 4.56990 4.62547 4.63977 4.74297 4.75588 4.80976 4.83477 4.87890 4.93854 4.97928 5.01584 5.04654 5.09121 5.13749 5.19728 5.24265 5.27107 5.30890 5.34949 5.45911 5.57654 5.69281 5.92991 6.19007 6.33791 6.80852 6.86537 7.29342 7.38028 7.56806 8.92918 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010752 B = 0.006114 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.480664 B = 4578.360897 C = 6518.169938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.095 3.905 3 N -0.599 5.599 4 C 0.268 3.732 5 C -0.506 4.506 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.932 5.932 9 Si 0.935 3.065 10 H -0.256 1.256 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.505 3.495 14 O -0.557 6.557 15 C 0.107 3.893 16 H 0.124 0.876 17 C -0.089 4.089 18 C -0.155 4.155 19 H 0.154 0.846 20 C -0.127 4.127 21 C 0.042 3.958 22 H 0.135 0.865 23 N -0.574 5.574 24 C 0.663 3.337 25 O -0.593 6.593 26 O -0.338 6.338 27 C 0.128 3.872 28 C -0.169 4.169 29 C -0.134 4.134 30 C -0.165 4.165 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.022 0.978 37 H -0.009 1.009 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.122 0.878 41 H 0.146 0.854 42 H 0.104 0.896 43 H 0.050 0.950 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.093 0.907 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.091 0.909 51 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.829 -9.411 16.338 19.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.331 5.331 4 C 0.147 3.853 5 C -0.545 4.545 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.573 5.573 9 Si 0.761 3.239 10 H -0.180 1.180 11 H -0.207 1.207 12 H -0.206 1.206 13 C 0.292 3.708 14 O -0.435 6.435 15 C 0.000 4.000 16 H 0.141 0.859 17 C -0.127 4.127 18 C -0.174 4.174 19 H 0.171 0.829 20 C -0.164 4.164 21 C -0.061 4.061 22 H 0.152 0.848 23 N -0.313 5.313 24 C 0.420 3.580 25 O -0.486 6.486 26 O -0.251 6.251 27 C 0.091 3.909 28 C -0.227 4.227 29 C -0.191 4.191 30 C -0.223 4.223 31 H 0.116 0.884 32 H 0.081 0.919 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.009 0.991 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.140 0.860 41 H 0.164 0.836 42 H 0.122 0.878 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.112 0.888 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.110 0.890 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.247 -8.538 16.291 18.677 hybrid contribution 1.023 0.642 -1.208 1.708 sum -2.224 -7.896 15.083 17.170 Atomic orbital electron populations 1.22192 0.94049 1.03739 1.01879 1.21815 0.95704 0.81692 1.03490 1.48154 1.64114 1.14807 1.06027 1.18658 0.95712 0.90969 0.79976 1.21585 0.95365 1.36274 1.01250 0.92680 1.25566 1.00889 0.95103 0.96582 1.70041 1.36080 1.40363 1.10809 0.85895 0.81428 0.78182 0.78414 1.17966 1.20719 1.20598 1.20486 0.77449 0.87311 0.85594 1.90657 1.47379 1.18170 1.87310 1.22573 0.89303 1.00078 0.88005 0.85885 1.22270 0.94751 1.02378 0.93330 1.23773 0.93458 1.02927 0.97263 0.82866 1.23618 0.97180 0.89957 1.05687 1.22552 0.94612 1.05445 0.83463 0.84753 1.46791 1.13435 1.62389 1.08726 1.17846 0.81493 0.76529 0.82103 1.90795 1.46906 1.60728 1.50148 1.86738 1.37472 1.75168 1.25736 1.22197 0.78966 0.93784 0.95941 1.22409 0.98777 0.98478 1.02993 1.21889 1.01979 1.02659 0.92547 1.22343 1.02799 0.95683 1.01439 0.88353 0.91898 0.94183 0.91041 0.88803 0.96026 0.99134 0.92891 0.91610 0.86031 0.83574 0.87767 0.93041 0.88930 0.90673 0.93860 0.88831 0.92272 0.90953 0.89002 0.93994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.61 10.24 71.98 0.74 -2.87 16 2 C 0.10 2.77 6.02 86.38 0.52 3.29 16 3 N -0.60 -24.58 2.46 -826.13 -2.03 -26.62 16 4 C 0.27 14.07 5.18 85.63 0.44 14.51 16 5 C -0.51 -27.94 8.74 25.60 0.22 -27.71 16 6 H 0.06 3.08 6.44 -2.91 -0.02 3.06 16 7 C 0.02 0.93 5.46 84.66 0.46 1.40 16 8 N -0.93 -55.51 13.29 21.45 0.28 -55.22 16 9 Si 0.94 43.89 27.86 68.60 1.91 45.80 16 10 H -0.26 -11.36 6.67 99.48 0.66 -10.70 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.50 20.70 5.37 87.66 0.47 21.17 16 14 O -0.56 -28.49 13.88 20.07 0.28 -28.21 16 15 C 0.11 3.13 2.73 44.61 0.12 3.25 16 16 H 0.12 2.93 4.71 -2.38 -0.01 2.92 16 17 C -0.09 -1.93 6.44 31.84 0.20 -1.73 16 18 C -0.16 -2.46 7.21 -9.83 -0.07 -2.53 16 19 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 20 C -0.13 -1.63 9.85 30.59 0.30 -1.33 16 21 C 0.04 0.95 7.17 45.12 0.32 1.27 16 22 H 0.13 3.13 8.08 -2.39 -0.02 3.11 16 23 N -0.57 -18.85 3.21 -897.00 -2.88 -21.73 16 24 C 0.66 26.84 7.56 129.79 0.98 27.82 16 25 O -0.59 -24.38 12.24 19.81 0.24 -24.14 16 26 O -0.34 -15.06 5.91 -47.85 -0.28 -15.34 16 27 C 0.13 5.05 1.13 -10.79 -0.01 5.04 16 28 C -0.17 -5.72 8.36 71.98 0.60 -5.12 16 29 C -0.13 -5.58 8.45 71.98 0.61 -4.97 16 30 C -0.17 -5.99 8.39 71.98 0.60 -5.38 16 31 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.06 1.29 7.09 -2.39 -0.02 1.27 16 33 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 2.24 8.08 -2.39 -0.02 2.22 16 35 H 0.09 2.13 5.57 -2.38 -0.01 2.11 16 36 H 0.02 1.17 8.05 -2.39 -0.02 1.15 16 37 H -0.01 -0.58 7.46 -2.39 -0.02 -0.60 16 38 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.07 1.79 8.05 -2.38 -0.02 1.77 16 40 H 0.12 1.86 7.09 -2.39 -0.02 1.84 16 41 H 0.15 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.10 1.28 7.14 -2.39 -0.02 1.26 16 43 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 45 H 0.07 2.65 5.88 -2.39 -0.01 2.64 16 46 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 48 H 0.06 2.70 4.12 -2.39 -0.01 2.69 16 49 H 0.07 2.73 5.88 -2.39 -0.01 2.72 16 50 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 51 H 0.04 1.64 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -78.25 391.38 4.92 -73.33 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: 0.89 Total: 26.02 kcal Atomic # 6 Polarization: 19.59 SS G_CDS: 6.52 Total: 26.11 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -4.63 Total: -103.56 kcal Atomic # 8 Polarization: -67.93 SS G_CDS: 0.24 Total: -67.69 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.91 Total: 45.80 kcal Total: -78.25 4.92 -73.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814348170.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.099 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds