Wall clock time and date at job start Tue Mar 31 2020 22:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.47181 * 2 1 4 4 C 1.34235 * 116.99937 * 179.97438 * 3 2 1 5 5 O 1.20815 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99549 * 179.97438 * 4 3 2 7 7 C 1.53004 * 110.88659 * 297.64037 * 6 4 3 8 8 C 1.54623 * 110.97380 * 61.45332 * 6 4 3 9 9 C 1.51282 * 104.31101 * 93.25326 * 8 6 4 10 10 O 1.21286 * 124.94199 * 196.27917 * 9 8 6 11 11 N 1.34735 * 109.93792 * 16.31290 * 9 8 6 12 12 C 1.46501 * 124.30373 * 180.38847 * 11 9 8 13 13 N 1.46901 * 109.47025 * 269.96321 * 12 11 9 14 14 C 1.46841 * 111.00131 * 30.78902 * 13 12 11 15 15 C 1.53039 * 109.52579 * 185.83881 * 14 13 12 16 16 C 1.53121 * 109.27409 * 300.81916 * 15 14 13 17 17 C 1.53122 * 109.16094 * 57.65532 * 16 15 14 18 18 H 1.08999 * 109.53640 * 62.30812 * 17 16 15 19 19 C 1.50706 * 109.50040 * 182.40061 * 17 16 15 20 20 H 1.07999 * 119.99707 * 119.79846 * 19 17 16 21 21 C 1.37872 * 120.00173 * 299.80335 * 19 17 16 22 22 N 1.31519 * 120.00229 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00040 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46994 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47096 * 119.99654 * 23 21 19 26 26 H 1.48496 * 109.47033 * 239.99719 * 23 21 19 27 27 C 1.46852 * 110.99803 * 154.99521 * 13 12 11 28 28 C 1.46768 * 111.35098 * 0.35387 * 11 9 8 29 29 H 1.09004 * 109.47080 * 300.00337 * 1 2 3 30 30 H 1.08999 * 109.46573 * 59.99961 * 1 2 3 31 31 H 1.08991 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47391 * 239.99508 * 2 1 3 33 33 H 1.09001 * 109.47200 * 119.99345 * 2 1 3 34 34 H 1.09001 * 109.47309 * 182.36387 * 7 6 4 35 35 H 1.09002 * 109.47025 * 302.36020 * 7 6 4 36 36 H 1.08999 * 109.47249 * 62.35964 * 7 6 4 37 37 H 1.09002 * 110.48860 * 211.99800 * 8 6 4 38 38 H 1.08998 * 110.48497 * 334.50693 * 8 6 4 39 39 H 1.09001 * 109.46623 * 29.95972 * 12 11 9 40 40 H 1.09000 * 109.47491 * 149.95795 * 12 11 9 41 41 H 1.08999 * 109.46258 * 305.85491 * 14 13 12 42 42 H 1.09004 * 109.46754 * 65.82262 * 14 13 12 43 43 H 1.08993 * 109.50507 * 180.88006 * 15 14 13 44 44 H 1.08997 * 109.53282 * 60.77728 * 15 14 13 45 45 H 1.08998 * 109.52332 * 297.74181 * 16 15 14 46 46 H 1.09006 * 109.51731 * 177.55584 * 16 15 14 47 47 H 0.96998 * 120.00064 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.46792 * 294.17855 * 27 13 12 49 49 H 1.08997 * 109.46290 * 54.15537 * 27 13 12 50 50 H 1.09000 * 110.24529 * 224.01554 * 28 11 9 51 51 H 1.09008 * 110.31722 * 102.05615 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.5170 3.6942 -1.2670 8 6 3.4941 3.7133 1.2676 9 6 4.6214 3.4764 2.2482 10 8 4.5554 3.6728 3.4432 11 7 5.7076 3.0163 1.5972 12 6 6.9760 2.6750 2.2459 13 7 7.8426 3.8607 2.2812 14 6 7.0470 5.0914 2.3731 15 6 7.9702 6.3068 2.2611 16 6 9.0054 6.2607 3.3884 17 6 9.7877 4.9475 3.2989 18 1 10.3266 4.9080 2.3523 19 6 10.7688 4.8676 4.4401 20 1 10.7032 4.0589 5.1529 21 6 11.7500 5.8268 4.5741 22 7 11.8302 6.8113 3.7058 23 14 12.9657 5.7281 5.9890 24 1 12.6636 4.5342 6.8187 25 1 14.3451 5.6194 5.4498 26 1 12.8551 6.9519 6.8228 27 6 8.8118 3.7716 3.3809 28 6 5.4572 2.9002 0.1557 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.9792 4.6814 -1.2635 35 1 3.8515 3.1396 -2.1437 36 1 2.4326 3.8008 -1.2966 37 1 3.3957 4.7767 1.0490 38 1 2.5575 3.3173 1.6600 39 1 6.7836 2.3351 3.2635 40 1 7.4690 1.8811 1.6848 41 1 6.3175 5.1137 1.5635 42 1 6.5271 5.1173 3.3309 43 1 7.3812 7.2201 2.3451 44 1 8.4799 6.2898 1.2979 45 1 8.4982 6.3178 4.3514 46 1 9.6920 7.1013 3.2869 47 1 12.5207 7.4860 3.7999 48 1 8.2838 3.8035 4.3339 49 1 9.3642 2.8352 3.3030 50 1 5.8518 1.9565 -0.2209 51 1 5.9106 3.7370 -0.3759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853524417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:44 Heat of formation + Delta-G solvation = -112.232038 kcal Electronic energy + Delta-G solvation = -30995.308118 eV Core-core repulsion = 26894.790591 eV Total energy + Delta-G solvation = -4100.517526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.64012 -40.13513 -37.90784 -37.29622 -36.44398 -34.53123 -32.87255 -32.03296 -31.27510 -29.77775 -28.90135 -26.82753 -25.55768 -24.92607 -24.59068 -22.86573 -21.96739 -21.32567 -20.46357 -19.48553 -18.57267 -17.97461 -17.30820 -16.99791 -16.53902 -16.30049 -15.84600 -15.39029 -14.76338 -14.60162 -14.37181 -14.31631 -13.98482 -13.68825 -13.50356 -13.48854 -13.10889 -13.04608 -12.94736 -12.87197 -12.59927 -12.37989 -12.25003 -12.11113 -11.99325 -11.96748 -11.78302 -11.54553 -11.30444 -10.94751 -10.93348 -10.68107 -10.64737 -10.62735 -10.08028 -9.90775 -9.76751 -9.44502 -9.12289 -8.87850 -8.66768 -8.26759 -7.61213 -5.94550 -4.00231 1.78342 2.13405 2.48797 2.90054 3.32551 3.40446 3.44751 3.76004 3.97561 4.10821 4.36167 4.42534 4.49147 4.54083 4.60275 4.66065 4.83216 5.12456 5.15070 5.16558 5.27271 5.32666 5.33101 5.35741 5.40545 5.43643 5.52889 5.53434 5.62304 5.65103 5.80200 5.91264 6.03407 6.08652 6.29918 6.35391 6.45302 6.53972 6.76417 6.79366 6.97581 7.05280 7.25779 7.33731 7.40455 7.66916 7.75368 7.81165 8.08328 8.12437 8.20592 8.51367 9.03738 9.63877 11.11580 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.002394 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.289192 B =11695.252233 C =11953.793085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.477 3.523 5 O -0.495 6.495 6 C -0.069 4.069 7 C -0.134 4.134 8 C -0.143 4.143 9 C 0.514 3.486 10 O -0.519 6.519 11 N -0.614 5.614 12 C 0.293 3.707 13 N -0.550 5.550 14 C 0.064 3.936 15 C -0.115 4.115 16 C -0.110 4.110 17 C 0.057 3.943 18 H 0.035 0.965 19 C -0.513 4.513 20 H 0.054 0.946 21 C 0.062 3.938 22 N -0.888 5.888 23 Si 0.890 3.110 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.069 3.931 28 C 0.121 3.879 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.054 0.946 40 H 0.092 0.908 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.029 0.971 46 H 0.090 0.910 47 H 0.259 0.741 48 H 0.023 0.977 49 H 0.061 0.939 50 H 0.098 0.902 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.774 -9.017 -13.274 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.319 3.681 5 O -0.381 6.381 6 C -0.071 4.071 7 C -0.191 4.191 8 C -0.183 4.183 9 C 0.301 3.699 10 O -0.394 6.394 11 N -0.348 5.348 12 C 0.083 3.917 13 N -0.278 5.278 14 C -0.064 4.064 15 C -0.153 4.153 16 C -0.148 4.148 17 C 0.038 3.962 18 H 0.053 0.947 19 C -0.552 4.552 20 H 0.072 0.928 21 C -0.139 4.139 22 N -0.527 5.527 23 Si 0.718 3.282 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.058 4.058 28 C -0.003 4.003 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.041 0.959 49 H 0.079 0.921 50 H 0.116 0.884 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.176 -9.115 -13.060 27.302 hybrid contribution 0.288 -0.281 1.479 1.533 sum -21.888 -9.396 -11.581 26.485 Atomic orbital electron populations 1.21811 0.92370 1.03122 1.03652 1.23086 0.95531 0.79890 1.02793 1.86479 1.24015 1.32655 1.83843 1.23173 0.80845 0.91803 0.72320 1.90689 1.60370 1.42592 1.44446 1.21427 0.96497 0.90052 0.99098 1.21793 1.03165 1.00412 0.93746 1.22523 0.99475 1.03365 0.92948 1.20819 0.84393 0.76291 0.88376 1.90773 1.82810 1.51497 1.14349 1.48415 1.12959 1.65432 1.08035 1.22113 0.79322 0.93787 0.96479 1.62499 1.16467 1.01168 1.47630 1.22003 0.95117 0.90325 0.98976 1.21668 0.97680 0.94700 1.01282 1.21647 0.96015 1.03081 0.94091 1.18647 0.91264 0.88646 0.97605 0.94725 1.21185 1.12887 1.09976 1.11106 0.92764 1.24933 0.97434 0.95413 0.96115 1.69905 1.33751 1.13427 1.35663 0.86566 0.81148 0.77904 0.82542 1.19858 1.21071 1.21118 1.22327 0.93029 1.01506 0.88945 1.22149 0.91160 1.04822 0.82134 0.91334 0.91370 0.90123 0.91057 0.91112 0.89933 0.91170 0.90421 0.85955 0.87193 0.92843 0.88989 0.92841 0.95053 0.93735 0.92285 0.95166 0.89129 0.93154 0.95872 0.92100 0.88371 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 10.29 37.16 0.38 -0.32 16 2 C 0.06 0.43 6.19 37.16 0.23 0.66 16 3 O -0.35 -3.12 9.99 -39.27 -0.39 -3.51 16 4 C 0.48 4.87 6.60 36.00 0.24 5.11 16 5 O -0.49 -6.41 15.26 -18.74 -0.29 -6.69 16 6 C -0.07 -0.59 0.94 -154.03 -0.15 -0.73 16 7 C -0.13 -0.71 8.47 37.16 0.31 -0.40 16 8 C -0.14 -1.37 5.95 -26.74 -0.16 -1.52 16 9 C 0.51 7.53 6.28 -10.72 -0.07 7.46 16 10 O -0.52 -9.86 16.61 5.55 0.09 -9.77 16 11 N -0.61 -8.54 1.87 -175.81 -0.33 -8.87 16 12 C 0.29 4.75 6.40 -63.31 -0.41 4.35 16 13 N -0.55 -10.46 4.91 -238.58 -1.17 -11.63 16 14 C 0.06 1.21 4.26 -3.84 -0.02 1.19 16 15 C -0.12 -2.34 6.09 -26.65 -0.16 -2.51 16 16 C -0.11 -2.70 5.03 -26.61 -0.13 -2.83 16 17 C 0.06 1.46 2.26 -91.69 -0.21 1.25 16 18 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 19 C -0.51 -14.30 8.56 -34.44 -0.29 -14.60 16 20 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 22 N -0.89 -25.61 11.36 55.43 0.63 -24.98 16 23 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 C 0.07 1.52 4.52 -3.83 -0.02 1.50 16 28 C 0.12 1.25 6.14 -3.12 -0.02 1.23 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 34 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.12 0.91 7.90 -51.93 -0.41 0.50 16 38 H 0.11 0.99 7.73 -51.93 -0.40 0.58 16 39 H 0.05 0.95 7.65 -51.93 -0.40 0.55 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.05 0.88 6.14 -51.93 -0.32 0.57 16 42 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 47 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 50 H 0.10 1.05 6.95 -51.93 -0.36 0.69 16 51 H 0.09 0.86 7.84 -51.92 -0.41 0.45 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -33.44 399.74 -9.88 -43.31 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.86 Total: -1.97 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -0.56 Total: 1.49 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.87 Total: -45.47 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.59 Total: -19.97 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.44 -9.88 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.918 kcal (2) G-P(sol) polarization free energy of solvation -33.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds