Wall clock time and date at job start Tue Mar 31 2020 22:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45205 * 109.47181 * 2 1 4 4 C 1.34235 * 116.99937 * 179.97438 * 3 2 1 5 5 O 1.20815 * 119.99911 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99549 * 179.97438 * 4 3 2 7 7 C 1.53004 * 110.88659 * 297.64037 * 6 4 3 8 8 C 1.54623 * 110.97380 * 61.45332 * 6 4 3 9 9 C 1.51282 * 104.31101 * 93.25326 * 8 6 4 10 10 O 1.21286 * 124.94199 * 196.27917 * 9 8 6 11 11 N 1.34735 * 109.93792 * 16.31290 * 9 8 6 12 12 C 1.46501 * 124.30373 * 180.38847 * 11 9 8 13 13 N 1.46901 * 109.47025 * 269.96321 * 12 11 9 14 14 C 1.46841 * 111.00131 * 30.78902 * 13 12 11 15 15 C 1.53039 * 109.52579 * 185.83881 * 14 13 12 16 16 C 1.53121 * 109.27409 * 300.81916 * 15 14 13 17 17 C 1.53122 * 109.16094 * 57.65532 * 16 15 14 18 18 H 1.08999 * 109.53640 * 62.30812 * 17 16 15 19 19 C 1.50706 * 109.50040 * 182.40061 * 17 16 15 20 20 H 1.07999 * 119.99707 * 119.79846 * 19 17 16 21 21 C 1.37872 * 120.00173 * 299.80335 * 19 17 16 22 22 N 1.31519 * 120.00229 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 120.00040 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.46994 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47096 * 119.99654 * 23 21 19 26 26 H 1.48496 * 109.47033 * 239.99719 * 23 21 19 27 27 C 1.46852 * 110.99803 * 154.99521 * 13 12 11 28 28 C 1.46768 * 111.35098 * 0.35387 * 11 9 8 29 29 H 1.09004 * 109.47080 * 300.00337 * 1 2 3 30 30 H 1.08999 * 109.46573 * 59.99961 * 1 2 3 31 31 H 1.08991 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47391 * 239.99508 * 2 1 3 33 33 H 1.09001 * 109.47200 * 119.99345 * 2 1 3 34 34 H 1.09001 * 109.47309 * 182.36387 * 7 6 4 35 35 H 1.09002 * 109.47025 * 302.36020 * 7 6 4 36 36 H 1.08999 * 109.47249 * 62.35964 * 7 6 4 37 37 H 1.09002 * 110.48860 * 211.99800 * 8 6 4 38 38 H 1.08998 * 110.48497 * 334.50693 * 8 6 4 39 39 H 1.09001 * 109.46623 * 29.95972 * 12 11 9 40 40 H 1.09000 * 109.47491 * 149.95795 * 12 11 9 41 41 H 1.08999 * 109.46258 * 305.85491 * 14 13 12 42 42 H 1.09004 * 109.46754 * 65.82262 * 14 13 12 43 43 H 1.08993 * 109.50507 * 180.88006 * 15 14 13 44 44 H 1.08997 * 109.53282 * 60.77728 * 15 14 13 45 45 H 1.08998 * 109.52332 * 297.74181 * 16 15 14 46 46 H 1.09006 * 109.51731 * 177.55584 * 16 15 14 47 47 H 0.96998 * 120.00064 * 180.02562 * 22 21 19 48 48 H 1.08998 * 109.46792 * 294.17855 * 27 13 12 49 49 H 1.08997 * 109.46290 * 54.15537 * 27 13 12 50 50 H 1.09000 * 110.24529 * 224.01554 * 28 11 9 51 51 H 1.09008 * 110.31722 * 102.05615 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.5170 3.6942 -1.2670 8 6 3.4941 3.7133 1.2676 9 6 4.6214 3.4764 2.2482 10 8 4.5554 3.6728 3.4432 11 7 5.7076 3.0163 1.5972 12 6 6.9760 2.6750 2.2459 13 7 7.8426 3.8607 2.2812 14 6 7.0470 5.0914 2.3731 15 6 7.9702 6.3068 2.2611 16 6 9.0054 6.2607 3.3884 17 6 9.7877 4.9475 3.2989 18 1 10.3266 4.9080 2.3523 19 6 10.7688 4.8676 4.4401 20 1 10.7032 4.0589 5.1529 21 6 11.7500 5.8268 4.5741 22 7 11.8302 6.8113 3.7058 23 14 12.9657 5.7281 5.9890 24 1 12.6636 4.5342 6.8187 25 1 14.3451 5.6194 5.4498 26 1 12.8551 6.9519 6.8228 27 6 8.8118 3.7716 3.3809 28 6 5.4572 2.9002 0.1557 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 3.9792 4.6814 -1.2635 35 1 3.8515 3.1396 -2.1437 36 1 2.4326 3.8008 -1.2966 37 1 3.3957 4.7767 1.0490 38 1 2.5575 3.3173 1.6600 39 1 6.7836 2.3351 3.2635 40 1 7.4690 1.8811 1.6848 41 1 6.3175 5.1137 1.5635 42 1 6.5271 5.1173 3.3309 43 1 7.3812 7.2201 2.3451 44 1 8.4799 6.2898 1.2979 45 1 8.4982 6.3178 4.3514 46 1 9.6920 7.1013 3.2869 47 1 12.5207 7.4860 3.7999 48 1 8.2838 3.8035 4.3339 49 1 9.3642 2.8352 3.3030 50 1 5.8518 1.9565 -0.2209 51 1 5.9106 3.7370 -0.3759 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853524417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:43 Heat of formation + Delta-G solvation = -132.309958 kcal Electronic energy + Delta-G solvation = -30996.178762 eV Core-core repulsion = 26894.790591 eV Total energy + Delta-G solvation = -4101.388170 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53029 -41.12592 -39.50655 -38.20218 -37.40243 -36.00996 -34.48603 -33.00226 -32.40042 -31.65406 -29.78446 -27.82509 -26.99478 -26.43425 -25.51998 -23.67323 -23.43929 -23.04999 -21.25052 -20.61197 -20.40062 -18.86489 -18.46876 -18.09817 -17.74062 -17.43963 -17.25428 -16.61674 -16.31301 -15.78351 -15.68113 -15.25535 -15.13902 -14.91882 -14.79397 -14.70660 -14.49102 -14.21381 -13.89143 -13.66478 -13.54573 -13.45319 -13.40114 -13.24292 -13.10535 -12.93048 -12.87398 -12.71525 -12.59405 -12.53056 -12.51044 -12.03225 -11.87900 -11.76454 -11.55765 -11.44068 -11.42672 -11.05036 -10.92990 -10.70300 -10.40765 -10.14130 -9.20255 -8.09789 -6.23294 1.01619 1.34422 1.38950 1.40598 1.49105 1.52142 1.82077 2.41840 3.00994 3.03185 3.15575 3.17229 3.44667 3.65494 3.95813 4.00793 4.04695 4.06299 4.12642 4.21923 4.33204 4.34918 4.40613 4.48258 4.52988 4.55074 4.62205 4.64035 4.70355 4.80120 4.84633 4.90734 4.92798 4.93334 4.94360 5.02561 5.10979 5.13787 5.17184 5.32172 5.36671 5.41575 5.47958 5.61655 5.89905 5.97893 6.06464 6.14394 6.15160 6.41517 6.59034 6.87510 6.96173 7.44069 8.95303 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028013 B = 0.002394 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.289192 B =11695.252233 C =11953.793085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.475 3.525 5 O -0.529 6.529 6 C -0.056 4.056 7 C -0.130 4.130 8 C -0.131 4.131 9 C 0.501 3.499 10 O -0.572 6.572 11 N -0.616 5.616 12 C 0.295 3.705 13 N -0.547 5.547 14 C 0.074 3.926 15 C -0.107 4.107 16 C -0.104 4.104 17 C 0.057 3.943 18 H 0.007 0.993 19 C -0.537 4.537 20 H 0.048 0.952 21 C 0.015 3.985 22 N -0.913 5.913 23 Si 0.954 3.046 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.281 1.281 27 C 0.083 3.917 28 C 0.116 3.884 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.154 0.846 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.007 0.993 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.012 0.988 46 H 0.063 0.937 47 H 0.261 0.739 48 H 0.005 0.995 49 H 0.066 0.934 50 H 0.094 0.906 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.514 -8.882 -15.114 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.267 6.267 4 C 0.318 3.682 5 O -0.418 6.418 6 C -0.058 4.058 7 C -0.187 4.187 8 C -0.170 4.170 9 C 0.291 3.709 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.084 3.916 13 N -0.274 5.274 14 C -0.054 4.054 15 C -0.145 4.145 16 C -0.142 4.142 17 C 0.038 3.962 18 H 0.025 0.975 19 C -0.576 4.576 20 H 0.067 0.933 21 C -0.184 4.184 22 N -0.552 5.552 23 Si 0.780 3.220 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.206 1.206 27 C -0.045 4.045 28 C -0.006 4.006 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.171 0.829 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.130 0.870 41 H 0.104 0.896 42 H 0.025 0.975 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.030 0.970 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.023 0.977 49 H 0.084 0.916 50 H 0.113 0.887 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.949 -8.989 -14.947 29.627 hybrid contribution 0.801 -0.388 2.033 2.219 sum -23.148 -9.377 -12.914 28.116 Atomic orbital electron populations 1.21821 0.90227 1.04335 1.03929 1.23307 0.97204 0.79134 1.02417 1.86484 1.23244 1.33603 1.83329 1.23591 0.81074 0.92188 0.71311 1.90681 1.61134 1.43811 1.46157 1.21454 0.94807 0.89269 1.00273 1.21866 1.04281 1.00710 0.91810 1.22559 0.97373 1.05410 0.91675 1.21756 0.85624 0.75150 0.88398 1.90745 1.83798 1.53666 1.16876 1.48554 1.11882 1.64830 1.09727 1.21996 0.80410 0.92904 0.96271 1.62489 1.16897 1.02405 1.45656 1.21923 0.94944 0.89595 0.98909 1.21575 0.96981 0.96571 0.99341 1.21467 0.96377 1.01417 0.94951 1.18551 0.91639 0.90607 0.95371 0.97511 1.21517 1.14060 1.10113 1.11890 0.93347 1.25697 0.99117 0.95034 0.98545 1.70025 1.34314 1.13844 1.37013 0.85564 0.78965 0.77948 0.79513 1.19497 1.20255 1.20646 1.21999 0.93049 1.00236 0.89217 1.22410 0.92893 1.05560 0.79748 0.91513 0.90556 0.88482 0.90784 0.92253 0.88176 0.90482 0.89017 0.82868 0.86407 0.94930 0.87048 0.89570 0.97492 0.91525 0.92028 0.96959 0.91894 0.92959 0.97711 0.91574 0.88725 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.29 71.98 0.74 -0.32 16 2 C 0.05 0.69 6.19 71.98 0.45 1.13 16 3 O -0.35 -5.51 9.99 -51.47 -0.51 -6.02 16 4 C 0.47 8.84 6.60 71.24 0.47 9.31 16 5 O -0.53 -13.27 15.26 22.00 0.34 -12.93 16 6 C -0.06 -0.79 0.94 -51.87 -0.05 -0.84 16 7 C -0.13 -0.81 8.47 71.98 0.61 -0.20 16 8 C -0.13 -2.12 5.95 30.59 0.18 -1.93 16 9 C 0.50 14.14 6.28 87.85 0.55 14.69 16 10 O -0.57 -21.97 16.61 -3.05 -0.05 -22.03 16 11 N -0.62 -16.37 1.87 -828.54 -1.55 -17.92 16 12 C 0.30 9.51 6.40 170.81 1.09 10.60 16 13 N -0.55 -20.72 4.91 -908.72 -4.46 -25.19 16 14 C 0.07 2.75 4.26 86.33 0.37 3.11 16 15 C -0.11 -4.28 6.09 30.65 0.19 -4.09 16 16 C -0.10 -5.23 5.03 30.68 0.15 -5.08 16 17 C 0.06 3.01 2.26 -11.49 -0.03 2.99 16 18 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 19 C -0.54 -30.85 8.56 25.60 0.22 -30.63 16 20 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 21 C 0.01 0.85 5.30 84.65 0.45 1.30 16 22 N -0.91 -53.62 11.36 21.45 0.24 -53.38 16 23 Si 0.95 44.90 29.54 68.60 2.03 46.92 16 24 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 C 0.08 3.75 4.52 86.32 0.39 4.14 16 28 C 0.12 2.10 6.14 86.83 0.53 2.63 16 29 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 34 H 0.10 0.35 8.08 -2.39 -0.02 0.33 16 35 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.15 1.60 7.90 -2.39 -0.02 1.58 16 38 H 0.12 1.80 7.73 -2.39 -0.02 1.78 16 39 H 0.03 1.20 7.65 -2.39 -0.02 1.18 16 40 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.09 2.63 6.14 -2.39 -0.01 2.62 16 42 H 0.01 0.29 7.13 -2.38 -0.02 0.27 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.06 3.51 6.17 -2.38 -0.01 3.49 16 47 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.07 2.87 8.12 -2.39 -0.02 2.85 16 50 H 0.09 1.85 6.95 -2.39 -0.02 1.83 16 51 H 0.11 1.65 7.84 -2.38 -0.02 1.63 16 Total: -1.00 -75.89 399.74 3.25 -72.64 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.90 Total: 11.07 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 6.32 Total: 6.83 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -5.77 Total: -96.48 kcal Atomic # 8 Polarization: -40.75 SS G_CDS: -0.23 Total: -40.98 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -75.89 3.25 -72.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853524417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.670 kcal (2) G-P(sol) polarization free energy of solvation -75.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds